Wall clock time and date at job start Tue Mar 31 2020 07:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 112.85077 * 2 1 4 4 C 1.53780 * 113.61314 * 131.19904 * 2 1 3 5 5 H 1.09005 * 113.61253 * 25.34594 * 4 2 1 6 6 N 1.46495 * 113.61371 * 254.53172 * 4 2 1 7 7 C 1.34783 * 120.00288 * 155.00309 * 6 4 2 8 8 O 1.21690 * 119.99611 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99888 * 179.97438 * 7 6 4 10 10 H 1.07995 * 120.00283 * 8.47100 * 9 7 6 11 11 C 1.40048 * 119.99795 * 188.46659 * 9 7 6 12 12 N 1.30669 * 119.99971 * 192.79270 * 11 9 7 13 13 Si 1.86802 * 120.00077 * 12.79215 * 11 9 7 14 14 H 1.48502 * 109.47092 * 269.99943 * 13 11 9 15 15 H 1.48508 * 109.46864 * 29.99787 * 13 11 9 16 16 H 1.48497 * 109.47215 * 149.99675 * 13 11 9 17 17 C 1.53780 * 87.08309 * 139.98048 * 4 2 1 18 18 C 1.53782 * 113.61331 * 228.69326 * 2 1 3 19 19 H 1.09000 * 113.61568 * 334.65195 * 18 2 1 20 20 O 1.42901 * 113.61242 * 105.46816 * 18 2 1 21 21 C 1.42899 * 113.99996 * 209.99668 * 20 18 2 22 22 C 1.50695 * 109.46842 * 180.02562 * 21 20 18 23 23 C 1.38237 * 120.00137 * 269.72834 * 22 21 20 24 24 C 1.38237 * 120.00386 * 179.77081 * 23 22 21 25 25 C 1.38241 * 119.99370 * 0.50165 * 24 23 22 26 26 C 1.38228 * 120.00362 * 359.75431 * 25 24 23 27 27 C 1.38235 * 120.00091 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47254 * 288.79927 * 1 2 3 29 29 H 1.09001 * 109.47411 * 48.80578 * 1 2 3 30 30 H 1.09003 * 109.47381 * 168.79850 * 1 2 3 31 31 H 1.09000 * 109.47235 * 191.19514 * 3 2 1 32 32 H 1.08999 * 109.47184 * 311.19870 * 3 2 1 33 33 H 1.09005 * 109.46885 * 71.19559 * 3 2 1 34 34 H 0.97008 * 120.00076 * 334.99344 * 6 4 2 35 35 H 0.96997 * 120.00253 * 354.70870 * 12 11 9 36 36 H 1.08990 * 113.61513 * 89.11343 * 17 4 2 37 37 H 1.09001 * 113.61249 * 220.02236 * 17 4 2 38 38 H 1.09002 * 109.47388 * 300.00422 * 21 20 18 39 39 H 1.09000 * 109.46628 * 60.00561 * 21 20 18 40 40 H 1.07999 * 119.99727 * 359.97438 * 23 22 21 41 41 H 1.08001 * 120.00335 * 180.23198 * 24 23 22 42 42 H 1.08003 * 119.99676 * 179.72267 * 25 24 23 43 43 H 1.07997 * 120.00178 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00229 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1460 -0.9281 1.0602 5 1 1.4938 -1.7515 1.3516 6 7 2.7091 -0.2144 2.2090 7 6 2.8173 -0.8346 3.4007 8 8 2.4468 -1.9873 3.5225 9 6 3.3804 -0.1216 4.5484 10 1 3.5820 0.9372 4.4804 11 6 3.6578 -0.8125 5.7346 12 7 3.9199 -0.1505 6.8302 13 14 3.6529 -2.6805 5.7505 14 1 2.2891 -3.1691 6.0770 15 1 4.0537 -3.1879 4.4136 16 1 4.6119 -3.1693 6.7734 17 6 3.1924 -1.3136 0.0013 18 6 2.1460 -0.9301 -1.0585 19 1 1.4939 -1.7540 -1.3484 20 8 2.6953 -0.2360 -2.1803 21 6 2.6466 -0.9756 -3.4021 22 6 3.2494 -0.1530 -4.5115 23 6 2.4485 0.6862 -5.2633 24 6 3.0022 1.4444 -6.2780 25 6 4.3551 1.3556 -6.5475 26 6 5.1551 0.5125 -5.7993 27 6 4.6024 -0.2415 -4.7810 28 1 -0.3633 0.3311 0.9728 29 1 -0.3634 0.6768 -0.7733 30 1 -0.3634 -1.0081 -0.1996 31 1 3.1942 1.3532 -0.1995 32 1 1.6415 2.0075 -0.7732 33 1 1.9600 1.8733 0.9729 34 1 3.0042 0.7046 2.1119 35 1 3.9983 0.8160 6.8059 36 1 4.0710 -0.6688 0.0006 37 1 3.4443 -2.3742 0.0022 38 1 3.2106 -1.9015 -3.2891 39 1 1.6098 -1.2089 -3.6444 40 1 1.3906 0.7519 -5.0558 41 1 2.3771 2.1028 -6.8629 42 1 4.7870 1.9445 -7.3432 43 1 6.2120 0.4428 -6.0102 44 1 5.2274 -0.9005 -4.1966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187571494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:51 Heat of formation + Delta-G solvation = -59.449031 kcal Electronic energy + Delta-G solvation = -24381.546496 eV Core-core repulsion = 20877.586492 eV Total energy + Delta-G solvation = -3503.960005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.55 seconds Orbital eigenvalues (eV) -40.26896 -39.42107 -37.49147 -36.27143 -32.87651 -32.30153 -31.76313 -31.14393 -30.24354 -27.35689 -26.60587 -26.02533 -23.33525 -22.82675 -22.28832 -21.54699 -19.78067 -18.57270 -17.78361 -17.19317 -16.70653 -15.86113 -15.64771 -15.42121 -14.89675 -14.76053 -14.45925 -13.88857 -13.71540 -13.63415 -13.28185 -13.12450 -13.03138 -12.84674 -12.67585 -12.20527 -12.07895 -12.01054 -11.82422 -11.60452 -11.46050 -11.25890 -11.17978 -10.69825 -10.52522 -10.46167 -10.18935 -9.96037 -9.26478 -9.25340 -9.15694 -9.06483 -8.88505 -7.94917 -7.75990 -6.96974 -4.87772 1.02878 1.16218 3.35391 3.59301 3.67220 3.91104 4.07981 4.30690 4.50286 4.51551 4.57128 4.62331 4.72511 4.74647 4.84158 4.89614 4.97931 5.04456 5.16609 5.18829 5.29582 5.37794 5.42411 5.48192 5.61339 5.72237 5.76810 5.79545 5.82659 5.90999 6.01374 6.13562 6.19192 6.19612 6.21262 6.25141 6.36481 6.36948 6.54659 6.61076 6.73594 7.26653 7.57191 7.75470 7.81696 8.15968 8.87650 9.14188 10.13275 10.35510 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.002849 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.617764 B = 9826.494452 C =10057.332217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.118 4.118 4 C 0.146 3.854 5 H 0.108 0.892 6 N -0.740 5.740 7 C 0.552 3.448 8 O -0.620 6.620 9 C -0.601 4.601 10 H 0.069 0.931 11 C 0.062 3.938 12 N -0.834 5.834 13 Si 1.123 2.877 14 H -0.288 1.288 15 H -0.276 1.276 16 H -0.321 1.321 17 C -0.169 4.169 18 C 0.071 3.929 19 H 0.086 0.914 20 O -0.360 6.360 21 C 0.100 3.900 22 C -0.086 4.086 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.099 4.099 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 2.432 -25.695 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.176 4.176 4 C 0.039 3.961 5 H 0.125 0.875 6 N -0.391 5.391 7 C 0.360 3.640 8 O -0.512 6.512 9 C -0.637 4.637 10 H 0.087 0.913 11 C -0.155 4.155 12 N -0.462 5.462 13 Si 0.955 3.045 14 H -0.215 1.215 15 H -0.202 1.202 16 H -0.253 1.253 17 C -0.208 4.208 18 C 0.013 3.987 19 H 0.104 0.896 20 O -0.279 6.279 21 C 0.023 3.977 22 C -0.086 4.086 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.117 4.117 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.195 0.633 -24.597 24.703 hybrid contribution -0.105 1.860 -1.164 2.197 sum -2.300 2.493 -25.761 25.984 Atomic orbital electron populations 1.21729 0.93992 1.01434 1.02022 1.22585 0.95426 0.96411 0.94883 1.21332 1.01119 0.93862 1.01242 1.21843 0.94498 0.95066 0.84730 0.87455 1.45708 1.67842 1.16225 1.09309 1.18404 0.78146 0.85463 0.81977 1.90204 1.57435 1.19808 1.83799 1.22010 1.46375 0.97374 0.97970 0.91312 1.27092 0.88772 1.09564 0.90100 1.70624 1.36360 1.11176 1.28000 0.82585 0.76219 0.71461 0.74283 1.21539 1.20215 1.25263 1.23994 0.99055 1.01810 0.95968 1.23733 0.95725 0.94772 0.84519 0.89605 1.88030 1.82027 1.42200 1.15654 1.21335 0.99228 0.93440 0.83681 1.19667 0.94015 0.98545 0.96361 1.21077 0.99923 0.95463 0.95306 1.21146 0.95362 0.99639 0.98154 1.21189 0.94036 0.98699 0.99666 1.21160 0.99916 0.96992 0.96146 1.21114 0.94351 0.99103 0.97097 0.91979 0.92781 0.92712 0.91943 0.92490 0.92323 0.77731 0.91170 0.89241 0.91361 0.92535 0.92643 0.85991 0.86014 0.86125 0.85955 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.31 1.35 -153.70 -0.21 -1.52 16 3 C -0.12 -1.65 7.44 37.15 0.28 -1.37 16 4 C 0.15 2.62 3.69 -67.12 -0.25 2.37 16 5 H 0.11 2.10 7.42 -51.93 -0.39 1.72 16 6 N -0.74 -15.82 5.22 -54.42 -0.28 -16.11 16 7 C 0.55 14.77 7.49 -12.98 -0.10 14.67 16 8 O -0.62 -17.88 11.81 5.20 0.06 -17.81 16 9 C -0.60 -17.14 9.92 -35.63 -0.35 -17.50 16 10 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 11 C 0.06 1.82 5.52 -17.37 -0.10 1.72 16 12 N -0.83 -24.36 13.64 55.55 0.76 -23.60 16 13 Si 1.12 29.78 26.39 -169.99 -4.49 25.29 16 14 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 15 H -0.28 -7.48 6.45 56.52 0.36 -7.12 16 16 H -0.32 -8.15 7.11 56.52 0.40 -7.75 16 17 C -0.17 -2.66 7.36 -25.92 -0.19 -2.85 16 18 C 0.07 0.93 3.72 -25.92 -0.10 0.84 16 19 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 20 O -0.36 -4.70 9.43 -35.23 -0.33 -5.03 16 21 C 0.10 1.04 5.90 36.00 0.21 1.26 16 22 C -0.09 -0.90 5.51 -104.62 -0.58 -1.48 16 23 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 24 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 27 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 31 H 0.06 0.91 7.19 -51.93 -0.37 0.53 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 34 H 0.39 7.63 6.64 -40.82 -0.27 7.36 16 35 H 0.28 7.79 8.72 -40.82 -0.36 7.44 16 36 H 0.09 1.47 7.66 -51.93 -0.40 1.07 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.06 0.50 8.08 -51.93 -0.42 0.09 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -32.48 361.25 -8.70 -41.18 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.86 Total: 2.91 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -3.00 Total: -12.27 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.47 Total: -39.71 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.27 Total: -22.85 kcal Atomic # 14 Polarization: 29.78 SS G_CDS: -4.49 Total: 25.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.48 -8.70 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.273 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.55 seconds