Wall clock time and date at job start Tue Mar 31 2020 07:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 112.85077 * 2 1 4 4 C 1.53780 * 113.61314 * 131.19904 * 2 1 3 5 5 H 1.09005 * 113.61253 * 25.34594 * 4 2 1 6 6 N 1.46495 * 113.61371 * 254.53172 * 4 2 1 7 7 C 1.34783 * 120.00288 * 155.00309 * 6 4 2 8 8 O 1.21690 * 119.99611 * 359.97438 * 7 6 4 9 9 C 1.46375 * 119.99888 * 179.97438 * 7 6 4 10 10 H 1.07995 * 120.00283 * 8.47100 * 9 7 6 11 11 C 1.40048 * 119.99795 * 188.46659 * 9 7 6 12 12 N 1.30669 * 119.99971 * 192.79270 * 11 9 7 13 13 Si 1.86802 * 120.00077 * 12.79215 * 11 9 7 14 14 H 1.48502 * 109.47092 * 269.99943 * 13 11 9 15 15 H 1.48508 * 109.46864 * 29.99787 * 13 11 9 16 16 H 1.48497 * 109.47215 * 149.99675 * 13 11 9 17 17 C 1.53780 * 87.08309 * 139.98048 * 4 2 1 18 18 C 1.53782 * 113.61331 * 228.69326 * 2 1 3 19 19 H 1.09000 * 113.61568 * 334.65195 * 18 2 1 20 20 O 1.42901 * 113.61242 * 105.46816 * 18 2 1 21 21 C 1.42899 * 113.99996 * 209.99668 * 20 18 2 22 22 C 1.50695 * 109.46842 * 180.02562 * 21 20 18 23 23 C 1.38237 * 120.00137 * 269.72834 * 22 21 20 24 24 C 1.38237 * 120.00386 * 179.77081 * 23 22 21 25 25 C 1.38241 * 119.99370 * 0.50165 * 24 23 22 26 26 C 1.38228 * 120.00362 * 359.75431 * 25 24 23 27 27 C 1.38235 * 120.00091 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47254 * 288.79927 * 1 2 3 29 29 H 1.09001 * 109.47411 * 48.80578 * 1 2 3 30 30 H 1.09003 * 109.47381 * 168.79850 * 1 2 3 31 31 H 1.09000 * 109.47235 * 191.19514 * 3 2 1 32 32 H 1.08999 * 109.47184 * 311.19870 * 3 2 1 33 33 H 1.09005 * 109.46885 * 71.19559 * 3 2 1 34 34 H 0.97008 * 120.00076 * 334.99344 * 6 4 2 35 35 H 0.96997 * 120.00253 * 354.70870 * 12 11 9 36 36 H 1.08990 * 113.61513 * 89.11343 * 17 4 2 37 37 H 1.09001 * 113.61249 * 220.02236 * 17 4 2 38 38 H 1.09002 * 109.47388 * 300.00422 * 21 20 18 39 39 H 1.09000 * 109.46628 * 60.00561 * 21 20 18 40 40 H 1.07999 * 119.99727 * 359.97438 * 23 22 21 41 41 H 1.08001 * 120.00335 * 180.23198 * 24 23 22 42 42 H 1.08003 * 119.99676 * 179.72267 * 25 24 23 43 43 H 1.07997 * 120.00178 * 179.97438 * 26 25 24 44 44 H 1.08000 * 120.00229 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1460 -0.9281 1.0602 5 1 1.4938 -1.7515 1.3516 6 7 2.7091 -0.2144 2.2090 7 6 2.8173 -0.8346 3.4007 8 8 2.4468 -1.9873 3.5225 9 6 3.3804 -0.1216 4.5484 10 1 3.5820 0.9372 4.4804 11 6 3.6578 -0.8125 5.7346 12 7 3.9199 -0.1505 6.8302 13 14 3.6529 -2.6805 5.7505 14 1 2.2891 -3.1691 6.0770 15 1 4.0537 -3.1879 4.4136 16 1 4.6119 -3.1693 6.7734 17 6 3.1924 -1.3136 0.0013 18 6 2.1460 -0.9301 -1.0585 19 1 1.4939 -1.7540 -1.3484 20 8 2.6953 -0.2360 -2.1803 21 6 2.6466 -0.9756 -3.4021 22 6 3.2494 -0.1530 -4.5115 23 6 2.4485 0.6862 -5.2633 24 6 3.0022 1.4444 -6.2780 25 6 4.3551 1.3556 -6.5475 26 6 5.1551 0.5125 -5.7993 27 6 4.6024 -0.2415 -4.7810 28 1 -0.3633 0.3311 0.9728 29 1 -0.3634 0.6768 -0.7733 30 1 -0.3634 -1.0081 -0.1996 31 1 3.1942 1.3532 -0.1995 32 1 1.6415 2.0075 -0.7732 33 1 1.9600 1.8733 0.9729 34 1 3.0042 0.7046 2.1119 35 1 3.9983 0.8160 6.8059 36 1 4.0710 -0.6688 0.0006 37 1 3.4443 -2.3742 0.0022 38 1 3.2106 -1.9015 -3.2891 39 1 1.6098 -1.2089 -3.6444 40 1 1.3906 0.7519 -5.0558 41 1 2.3771 2.1028 -6.8629 42 1 4.7870 1.9445 -7.3432 43 1 6.2120 0.4428 -6.0102 44 1 5.2274 -0.9005 -4.1966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187571494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:45 Heat of formation + Delta-G solvation = -79.015739 kcal Electronic energy + Delta-G solvation = -24382.394972 eV Core-core repulsion = 20877.586492 eV Total energy + Delta-G solvation = -3504.808481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.60 seconds Orbital eigenvalues (eV) -41.52331 -40.16506 -39.30732 -37.43978 -35.08620 -33.92545 -32.66817 -31.78833 -31.44533 -28.52436 -28.42319 -27.01794 -24.76279 -23.54001 -23.43434 -22.23763 -21.71919 -20.31492 -19.45744 -18.10190 -17.64153 -17.33178 -16.68544 -16.53794 -16.26298 -15.99249 -15.79822 -15.37956 -14.99334 -14.93373 -14.61486 -14.28932 -14.27220 -14.07602 -14.03427 -13.64273 -13.20090 -13.14028 -13.02712 -12.87943 -12.68294 -12.51535 -12.22162 -12.01623 -11.91744 -11.68949 -11.60472 -11.43276 -11.34235 -11.11012 -10.30490 -10.09264 -9.82191 -9.75227 -9.57702 -9.20572 -7.12090 0.34560 0.50033 1.44186 1.53401 1.96096 2.17849 2.39434 2.53173 2.93747 3.22668 3.26372 3.39811 3.56069 3.78391 3.90861 3.96958 4.00051 4.15682 4.27015 4.28116 4.32262 4.37513 4.49267 4.53545 4.64964 4.68180 4.77498 4.78084 4.91566 4.94109 5.04114 5.05943 5.08135 5.10961 5.15794 5.37466 5.41288 5.50484 5.55136 5.56654 5.61096 5.67949 5.89714 6.09702 6.09910 6.30684 6.65229 7.18911 8.04122 8.10702 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.002849 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.617764 B = 9826.494452 C =10057.332217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 C -0.115 4.115 4 C 0.127 3.873 5 H 0.091 0.909 6 N -0.729 5.729 7 C 0.551 3.449 8 O -0.642 6.642 9 C -0.620 4.620 10 H 0.062 0.938 11 C 0.029 3.971 12 N -0.849 5.849 13 Si 1.156 2.844 14 H -0.291 1.291 15 H -0.288 1.288 16 H -0.303 1.303 17 C -0.168 4.168 18 C 0.090 3.910 19 H 0.109 0.891 20 O -0.372 6.372 21 C 0.096 3.904 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.397 0.603 35 H 0.277 0.723 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 2.647 -28.181 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.172 4.172 4 C 0.020 3.980 5 H 0.109 0.891 6 N -0.378 5.378 7 C 0.357 3.643 8 O -0.536 6.536 9 C -0.657 4.657 10 H 0.081 0.919 11 C -0.185 4.185 12 N -0.477 5.477 13 Si 0.985 3.015 14 H -0.219 1.219 15 H -0.216 1.216 16 H -0.233 1.233 17 C -0.208 4.208 18 C 0.032 3.968 19 H 0.127 0.873 20 O -0.291 6.291 21 C 0.020 3.980 22 C -0.105 4.105 23 C -0.129 4.129 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.151 4.151 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.796 0.879 -27.113 27.271 hybrid contribution 0.102 1.862 -0.527 1.938 sum -2.695 2.742 -27.640 27.906 Atomic orbital electron populations 1.21721 0.92484 1.02742 1.01981 1.22512 0.96555 0.96004 0.93289 1.21303 1.00744 0.93854 1.01348 1.22131 0.95764 0.95781 0.84287 0.89110 1.45489 1.66868 1.16556 1.08921 1.18269 0.77751 0.85124 0.83206 1.90182 1.58250 1.20641 1.84569 1.22193 1.47056 0.97347 0.99103 0.91937 1.27831 0.88676 1.11679 0.90315 1.70637 1.37541 1.11277 1.28236 0.82146 0.76284 0.69120 0.73955 1.21864 1.21555 1.23300 1.23941 0.98904 1.01594 0.96347 1.23510 0.94353 0.94723 0.84226 0.87334 1.88011 1.82036 1.42708 1.16300 1.21497 1.00439 0.93401 0.82615 1.19788 0.94415 0.99414 0.96864 1.21306 1.00530 0.95475 0.95570 1.21477 0.95864 0.99560 0.97965 1.21539 0.94101 0.98445 0.99919 1.21443 1.00996 0.96803 0.95865 1.21295 0.94548 0.99775 0.97857 0.93385 0.90704 0.91534 0.92798 0.90861 0.93082 0.76761 0.91231 0.90130 0.91451 0.92075 0.90923 0.84928 0.83890 0.83860 0.84337 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.08 -2.21 1.35 -51.66 -0.07 -2.28 16 3 C -0.12 -3.03 7.44 71.98 0.54 -2.49 16 4 C 0.13 4.46 3.69 45.52 0.17 4.63 16 5 H 0.09 3.53 7.42 -2.38 -0.02 3.52 16 6 N -0.73 -31.17 5.22 -444.32 -2.32 -33.48 16 7 C 0.55 29.68 7.49 86.36 0.65 30.32 16 8 O -0.64 -37.21 11.81 -4.32 -0.05 -37.26 16 9 C -0.62 -35.81 9.92 24.83 0.25 -35.56 16 10 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 11 C 0.03 1.72 5.52 85.30 0.47 2.19 16 12 N -0.85 -49.78 13.64 21.84 0.30 -49.48 16 13 Si 1.16 60.58 26.39 68.60 1.81 62.39 16 14 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 15 H -0.29 -15.59 6.45 99.48 0.64 -14.95 16 16 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 17 C -0.17 -5.17 7.36 31.12 0.23 -4.94 16 18 C 0.09 2.19 3.72 31.12 0.12 2.30 16 19 H 0.11 2.17 7.69 -2.39 -0.02 2.15 16 20 O -0.37 -8.89 9.43 -148.98 -1.41 -10.29 16 21 C 0.10 1.82 5.90 71.23 0.42 2.24 16 22 C -0.10 -2.03 5.51 -19.87 -0.11 -2.14 16 23 C -0.11 -1.89 9.70 22.27 0.22 -1.68 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 26 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 27 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 31 H 0.05 1.50 7.19 -2.39 -0.02 1.48 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.40 7.10 -2.38 -0.02 1.39 16 34 H 0.40 15.59 6.64 -92.70 -0.62 14.97 16 35 H 0.28 15.74 8.72 -92.71 -0.81 14.93 16 36 H 0.08 2.62 7.66 -2.39 -0.02 2.60 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 39 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 40 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -68.94 361.25 3.02 -65.92 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.27 Total: 19.13 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.42 Total: -16.92 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.02 Total: -82.97 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -1.46 Total: -47.55 kcal Atomic # 14 Polarization: 60.58 SS G_CDS: 1.81 Total: 62.39 kcal Total: -68.94 3.02 -65.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.098 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds