Wall clock time and date at job start Tue Mar 31 2020 07:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 112.84963 * 2 1 4 4 C 1.53785 * 113.61096 * 131.19347 * 2 1 3 5 5 H 1.08997 * 113.61592 * 254.61482 * 4 2 1 6 6 N 1.46498 * 113.61286 * 25.43521 * 4 2 1 7 7 C 1.34782 * 119.99746 * 204.99399 * 6 4 2 8 8 O 1.21687 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.46370 * 119.99804 * 179.97438 * 7 6 4 10 10 H 1.08000 * 120.00282 * 0.02562 * 9 7 6 11 11 C 1.40051 * 119.99744 * 180.02562 * 9 7 6 12 12 N 1.30667 * 120.00058 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 120.00078 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46989 * 60.00154 * 13 11 9 15 15 H 1.48495 * 109.47206 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47267 * 300.00499 * 13 11 9 17 17 C 1.53783 * 87.07804 * 139.97884 * 4 2 1 18 18 C 1.53781 * 113.61277 * 228.80231 * 2 1 3 19 19 H 1.08998 * 113.61545 * 334.56736 * 18 2 1 20 20 O 1.42898 * 113.61382 * 105.47361 * 18 2 1 21 21 C 1.42899 * 113.99569 * 209.99877 * 20 18 2 22 22 C 1.50710 * 109.46535 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99884 * 269.72234 * 22 21 20 24 24 C 1.38233 * 119.99547 * 179.81135 * 23 22 21 25 25 C 1.38233 * 120.00466 * 0.42433 * 24 23 22 26 26 C 1.38239 * 119.99672 * 359.80937 * 25 24 23 27 27 C 1.38234 * 120.00208 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47002 * 50.33185 * 1 2 3 29 29 H 1.08993 * 109.46955 * 170.33622 * 1 2 3 30 30 H 1.09000 * 109.47050 * 290.33451 * 1 2 3 31 31 H 1.08999 * 109.47105 * 69.66763 * 3 2 1 32 32 H 1.09000 * 109.46611 * 189.66636 * 3 2 1 33 33 H 1.08998 * 109.47047 * 309.66828 * 3 2 1 34 34 H 0.96997 * 120.00513 * 24.99401 * 6 4 2 35 35 H 0.97006 * 120.00109 * 179.97438 * 12 11 9 36 36 H 1.09004 * 113.61138 * 89.11351 * 17 4 2 37 37 H 1.08992 * 113.61520 * 219.93318 * 17 4 2 38 38 H 1.08995 * 109.47349 * 299.99613 * 21 20 18 39 39 H 1.08992 * 109.47410 * 60.00226 * 21 20 18 40 40 H 1.07996 * 120.00018 * 0.02562 * 23 22 21 41 41 H 1.07998 * 119.99551 * 180.20628 * 24 23 22 42 42 H 1.07994 * 120.00471 * 179.78617 * 25 24 23 43 43 H 1.08001 * 120.00118 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00184 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 2.5637 -0.3971 1.9157 6 7 1.2703 -2.0358 1.4506 7 6 1.4123 -2.6131 2.6602 8 8 2.2676 -2.2139 3.4283 9 6 0.5370 -3.7194 3.0503 10 1 -0.2223 -4.0735 2.3688 11 6 0.6843 -4.3190 4.3075 12 7 1.6027 -3.8903 5.1322 13 14 -0.4323 -5.7315 4.8052 14 1 -0.2642 -6.8557 3.8497 15 1 -0.0755 -6.1862 6.1730 16 1 -1.8453 -5.2750 4.7886 17 6 3.1923 -1.3137 0.0013 18 6 2.1460 -0.9281 -1.0602 19 1 1.4945 -1.7523 -1.3506 20 8 2.6954 -0.2319 -2.1807 21 6 2.6466 -0.9692 -3.4039 22 6 3.2485 -0.1440 -4.5121 23 6 2.4466 0.6960 -5.2619 24 6 2.9993 1.4559 -6.2758 25 6 4.3523 1.3692 -6.5456 26 6 5.1533 0.5255 -5.7989 27 6 4.6012 -0.2318 -4.7827 28 1 -0.3633 0.6560 -0.7911 29 1 -0.3633 -1.0130 -0.1725 30 1 -0.3633 0.3571 0.9636 31 1 1.9362 1.8834 0.9636 32 1 3.1988 1.3513 -0.1726 33 1 1.6608 1.9995 -0.7910 34 1 0.5883 -2.3537 0.8386 35 1 1.7044 -4.3054 6.0031 36 1 4.0711 -0.6687 0.0007 37 1 3.4453 -2.3738 0.0034 38 1 3.2106 -1.8953 -3.2926 39 1 1.6099 -1.2021 -3.6467 40 1 1.3890 0.7612 -5.0534 41 1 2.3734 2.1146 -6.8595 42 1 4.7835 1.9602 -7.3400 43 1 6.2103 0.4574 -6.0099 44 1 5.2269 -0.8912 -4.1996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187571510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:55 Heat of formation + Delta-G solvation = -44.591299 kcal Electronic energy + Delta-G solvation = -24334.809823 eV Core-core repulsion = 20831.494098 eV Total energy + Delta-G solvation = -3503.315725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14649 -39.35409 -37.06581 -35.96894 -32.62273 -32.01906 -31.49293 -31.09419 -29.96133 -27.14441 -26.52629 -26.02044 -23.50040 -22.77288 -22.15987 -21.48285 -19.90147 -18.18961 -17.28006 -16.89284 -16.46341 -15.74955 -15.57261 -15.30351 -14.89260 -14.66785 -14.32037 -14.01730 -13.60503 -13.39560 -13.13122 -13.08633 -12.91677 -12.52004 -12.39416 -12.11856 -11.87985 -11.80976 -11.57730 -11.37671 -11.21987 -11.14876 -11.07855 -10.93238 -10.62757 -10.46962 -10.24112 -10.13987 -9.74733 -9.13316 -9.09034 -9.00115 -8.85442 -7.63018 -7.50123 -6.19298 -4.65448 1.08528 1.21118 3.14894 3.19950 3.21654 3.43784 4.03858 4.09315 4.55070 4.59339 4.62881 4.73545 4.78751 4.83611 4.91799 4.95585 5.13696 5.19905 5.26568 5.31422 5.40070 5.47573 5.53760 5.64480 5.77831 5.84886 5.88061 5.97218 6.02900 6.10018 6.16861 6.24645 6.25851 6.29613 6.32106 6.38080 6.43436 6.59407 6.68094 6.72957 6.78693 7.37911 7.42185 7.91448 8.11052 8.32180 9.01363 9.52408 10.59538 10.78125 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.002689 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.246521 B =10411.785900 C =10562.974236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.112 4.112 4 C 0.151 3.849 5 H 0.096 0.904 6 N -0.747 5.747 7 C 0.556 3.444 8 O -0.579 6.579 9 C -0.546 4.546 10 H 0.066 0.934 11 C 0.088 3.912 12 N -0.767 5.767 13 Si 0.907 3.093 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.268 1.268 17 C -0.170 4.170 18 C 0.071 3.929 19 H 0.084 0.916 20 O -0.363 6.363 21 C 0.099 3.901 22 C -0.084 4.084 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.099 4.099 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.379 0.621 35 H 0.269 0.731 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 8.114 -21.007 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.170 4.170 4 C 0.042 3.958 5 H 0.114 0.886 6 N -0.401 5.401 7 C 0.361 3.639 8 O -0.461 6.461 9 C -0.583 4.583 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.732 3.268 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.210 4.210 18 C 0.014 3.986 19 H 0.101 0.899 20 O -0.282 6.282 21 C 0.023 3.977 22 C -0.084 4.084 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.211 0.789 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.181 8.559 -20.201 22.047 hybrid contribution -0.946 -1.172 -0.184 1.517 sum 1.235 7.387 -20.385 21.717 Atomic orbital electron populations 1.21635 0.94039 1.01390 1.01754 1.22603 0.95603 0.96010 0.95248 1.21332 1.00918 0.93704 1.01045 1.21286 0.90730 0.88839 0.94899 0.88557 1.45935 1.38078 1.36406 1.19650 1.18220 0.84280 0.82727 0.78708 1.90600 1.37991 1.65968 1.51544 1.20831 1.18739 1.17184 1.01516 0.91553 1.25698 0.94673 0.96906 0.95923 1.70008 1.27210 1.35874 1.06490 0.86444 0.80869 0.81481 0.78009 1.19319 1.20560 1.19292 1.24008 0.98430 1.01932 0.96630 1.24002 0.95745 0.94591 0.84273 0.89861 1.88011 1.82115 1.42411 1.15700 1.21325 0.99230 0.93433 0.83746 1.19695 0.93991 0.98380 0.96336 1.21083 0.99950 0.95455 0.95292 1.21137 0.95350 0.99660 0.98160 1.21175 0.94039 0.98793 0.99692 1.21152 0.99866 0.97018 0.96212 1.21113 0.94390 0.99087 0.97120 0.93148 0.92617 0.91946 0.92676 0.92140 0.92606 0.78864 0.92040 0.89570 0.91169 0.92572 0.92692 0.85972 0.86053 0.86182 0.86014 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.61 37.16 0.32 -1.53 16 2 C -0.09 -1.42 1.33 -153.69 -0.20 -1.63 16 3 C -0.11 -1.58 8.43 37.16 0.31 -1.27 16 4 C 0.15 2.90 3.78 -67.12 -0.25 2.64 16 5 H 0.10 2.13 7.42 -51.93 -0.39 1.74 16 6 N -0.75 -16.35 4.77 -54.42 -0.26 -16.61 16 7 C 0.56 15.63 7.75 -12.99 -0.10 15.53 16 8 O -0.58 -18.64 14.62 5.20 0.08 -18.56 16 9 C -0.55 -15.26 9.54 -35.63 -0.34 -15.60 16 10 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 11 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 12 N -0.77 -22.97 11.83 55.55 0.66 -22.31 16 13 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 C -0.17 -2.88 7.37 -25.82 -0.19 -3.07 16 18 C 0.07 1.04 3.62 -25.83 -0.09 0.94 16 19 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 20 O -0.36 -5.04 9.46 -35.23 -0.33 -5.38 16 21 C 0.10 1.14 5.90 36.01 0.21 1.35 16 22 C -0.08 -0.93 5.51 -104.62 -0.58 -1.51 16 23 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 24 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.77 6.59 -51.93 -0.34 0.43 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.86 7.22 -51.93 -0.38 0.49 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.38 7.33 7.12 -40.82 -0.29 7.04 16 35 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 36 H 0.09 1.40 7.64 -51.93 -0.40 1.01 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.20 16 39 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -33.80 365.44 -9.15 -42.95 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.80 Total: 8.44 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.97 Total: -9.05 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.40 Total: -38.92 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.26 Total: -23.94 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.80 -9.15 -42.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.644 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds