Wall clock time and date at job start Tue Mar 31 2020 07:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 112.84963 * 2 1 4 4 C 1.53785 * 113.61096 * 131.19347 * 2 1 3 5 5 H 1.08997 * 113.61592 * 254.61482 * 4 2 1 6 6 N 1.46498 * 113.61286 * 25.43521 * 4 2 1 7 7 C 1.34782 * 119.99746 * 204.99399 * 6 4 2 8 8 O 1.21687 * 120.00047 * 0.02562 * 7 6 4 9 9 C 1.46370 * 119.99804 * 179.97438 * 7 6 4 10 10 H 1.08000 * 120.00282 * 0.02562 * 9 7 6 11 11 C 1.40051 * 119.99744 * 180.02562 * 9 7 6 12 12 N 1.30667 * 120.00058 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 120.00078 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46989 * 60.00154 * 13 11 9 15 15 H 1.48495 * 109.47206 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47267 * 300.00499 * 13 11 9 17 17 C 1.53783 * 87.07804 * 139.97884 * 4 2 1 18 18 C 1.53781 * 113.61277 * 228.80231 * 2 1 3 19 19 H 1.08998 * 113.61545 * 334.56736 * 18 2 1 20 20 O 1.42898 * 113.61382 * 105.47361 * 18 2 1 21 21 C 1.42899 * 113.99569 * 209.99877 * 20 18 2 22 22 C 1.50710 * 109.46535 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99884 * 269.72234 * 22 21 20 24 24 C 1.38233 * 119.99547 * 179.81135 * 23 22 21 25 25 C 1.38233 * 120.00466 * 0.42433 * 24 23 22 26 26 C 1.38239 * 119.99672 * 359.80937 * 25 24 23 27 27 C 1.38234 * 120.00208 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47002 * 50.33185 * 1 2 3 29 29 H 1.08993 * 109.46955 * 170.33622 * 1 2 3 30 30 H 1.09000 * 109.47050 * 290.33451 * 1 2 3 31 31 H 1.08999 * 109.47105 * 69.66763 * 3 2 1 32 32 H 1.09000 * 109.46611 * 189.66636 * 3 2 1 33 33 H 1.08998 * 109.47047 * 309.66828 * 3 2 1 34 34 H 0.96997 * 120.00513 * 24.99401 * 6 4 2 35 35 H 0.97006 * 120.00109 * 179.97438 * 12 11 9 36 36 H 1.09004 * 113.61138 * 89.11351 * 17 4 2 37 37 H 1.08992 * 113.61520 * 219.93318 * 17 4 2 38 38 H 1.08995 * 109.47349 * 299.99613 * 21 20 18 39 39 H 1.08992 * 109.47410 * 60.00226 * 21 20 18 40 40 H 1.07996 * 120.00018 * 0.02562 * 23 22 21 41 41 H 1.07998 * 119.99551 * 180.20628 * 24 23 22 42 42 H 1.07994 * 120.00471 * 179.78617 * 25 24 23 43 43 H 1.08001 * 120.00118 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00184 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 1 2.5637 -0.3971 1.9157 6 7 1.2703 -2.0358 1.4506 7 6 1.4123 -2.6131 2.6602 8 8 2.2676 -2.2139 3.4283 9 6 0.5370 -3.7194 3.0503 10 1 -0.2223 -4.0735 2.3688 11 6 0.6843 -4.3190 4.3075 12 7 1.6027 -3.8903 5.1322 13 14 -0.4323 -5.7315 4.8052 14 1 -0.2642 -6.8557 3.8497 15 1 -0.0755 -6.1862 6.1730 16 1 -1.8453 -5.2750 4.7886 17 6 3.1923 -1.3137 0.0013 18 6 2.1460 -0.9281 -1.0602 19 1 1.4945 -1.7523 -1.3506 20 8 2.6954 -0.2319 -2.1807 21 6 2.6466 -0.9692 -3.4039 22 6 3.2485 -0.1440 -4.5121 23 6 2.4466 0.6960 -5.2619 24 6 2.9993 1.4559 -6.2758 25 6 4.3523 1.3692 -6.5456 26 6 5.1533 0.5255 -5.7989 27 6 4.6012 -0.2318 -4.7827 28 1 -0.3633 0.6560 -0.7911 29 1 -0.3633 -1.0130 -0.1725 30 1 -0.3633 0.3571 0.9636 31 1 1.9362 1.8834 0.9636 32 1 3.1988 1.3513 -0.1726 33 1 1.6608 1.9995 -0.7910 34 1 0.5883 -2.3537 0.8386 35 1 1.7044 -4.3054 6.0031 36 1 4.0711 -0.6687 0.0007 37 1 3.4453 -2.3738 0.0034 38 1 3.2106 -1.8953 -3.2926 39 1 1.6099 -1.2021 -3.6467 40 1 1.3890 0.7612 -5.0534 41 1 2.3734 2.1146 -6.8595 42 1 4.7835 1.9602 -7.3400 43 1 6.2103 0.4574 -6.0099 44 1 5.2269 -0.8912 -4.1996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187571510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:54 Heat of formation + Delta-G solvation = -65.411233 kcal Electronic energy + Delta-G solvation = -24335.712643 eV Core-core repulsion = 20831.494098 eV Total energy + Delta-G solvation = -3504.218545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49615 -40.13316 -38.85210 -37.34497 -34.69221 -33.57509 -32.64859 -31.77579 -31.31006 -28.62281 -28.14718 -27.06953 -24.95482 -23.56253 -23.43492 -22.23390 -21.82457 -19.80779 -18.84652 -17.97091 -17.61996 -17.30973 -16.63893 -16.44314 -16.35305 -15.90131 -15.65088 -15.35205 -14.83196 -14.53011 -14.40258 -14.25156 -13.98002 -13.95094 -13.83290 -13.43234 -13.11764 -13.09425 -12.93651 -12.80123 -12.65607 -12.58435 -12.46654 -12.12646 -12.00440 -11.89968 -11.69741 -11.50355 -11.10698 -10.91277 -10.28185 -9.86685 -9.80832 -9.73693 -9.41027 -8.28608 -6.85393 0.35998 0.51417 1.40250 1.43718 1.55360 2.24447 2.47120 2.59990 2.99545 3.15350 3.44441 3.50408 3.65299 3.84582 3.94074 4.03503 4.06079 4.16729 4.30071 4.31620 4.36601 4.39141 4.50498 4.65909 4.67141 4.77042 4.79325 4.83057 4.92644 4.96469 5.00983 5.09222 5.13555 5.16944 5.17365 5.31974 5.43469 5.45109 5.56703 5.62242 5.69682 5.88898 6.11178 6.22435 6.27829 6.36070 6.87055 7.56169 8.50773 8.68399 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028441 B = 0.002689 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.246521 B =10411.785900 C =10562.974236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.109 4.109 4 C 0.132 3.868 5 H 0.058 0.942 6 N -0.731 5.731 7 C 0.541 3.459 8 O -0.632 6.632 9 C -0.572 4.572 10 H 0.088 0.912 11 C 0.028 3.972 12 N -0.822 5.822 13 Si 0.998 3.002 14 H -0.254 1.254 15 H -0.276 1.276 16 H -0.254 1.254 17 C -0.168 4.168 18 C 0.092 3.908 19 H 0.097 0.903 20 O -0.370 6.370 21 C 0.096 3.904 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.117 4.117 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 7.986 -23.553 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.167 4.167 4 C 0.024 3.976 5 H 0.076 0.924 6 N -0.384 5.384 7 C 0.345 3.655 8 O -0.519 6.519 9 C -0.609 4.609 10 H 0.107 0.893 11 C -0.187 4.187 12 N -0.452 5.452 13 Si 0.817 3.183 14 H -0.178 1.178 15 H -0.201 1.201 16 H -0.177 1.177 17 C -0.208 4.208 18 C 0.034 3.966 19 H 0.114 0.886 20 O -0.289 6.289 21 C 0.020 3.980 22 C -0.104 4.104 23 C -0.129 4.129 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.135 4.135 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.503 8.453 -22.823 24.344 hybrid contribution -0.342 -1.040 0.507 1.206 sum 0.161 7.413 -22.317 23.516 Atomic orbital electron populations 1.21628 0.92720 1.02269 1.01981 1.22504 0.96597 0.95934 0.93117 1.21320 1.00681 0.93081 1.01581 1.21424 0.92134 0.89119 0.94894 0.92417 1.45495 1.38397 1.36391 1.18165 1.18603 0.83848 0.83145 0.79878 1.90554 1.40094 1.67615 1.53687 1.21387 1.19347 1.17508 1.02646 0.89346 1.26981 0.96173 1.00046 0.95506 1.70189 1.29677 1.38046 1.07265 0.85076 0.78450 0.77034 0.77760 1.17803 1.20079 1.17744 1.23953 0.98762 1.01072 0.97005 1.23691 0.94245 0.94425 0.84208 0.88554 1.87996 1.82029 1.42666 1.16212 1.21481 1.00294 0.93428 0.82826 1.19767 0.94488 0.99367 0.96782 1.21297 1.00489 0.95489 0.95612 1.21470 0.95900 0.99508 0.97870 1.21541 0.94043 0.98442 0.99891 1.21440 1.01016 0.96718 0.95803 1.21283 0.94479 0.99789 0.97946 0.90493 0.92209 0.93334 0.92982 0.92694 0.90697 0.77105 0.91616 0.89254 0.92626 0.92462 0.91206 0.85011 0.83815 0.83735 0.84242 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.61 71.98 0.62 -2.80 16 2 C -0.08 -2.39 1.33 -51.65 -0.07 -2.46 16 3 C -0.11 -2.98 8.43 71.98 0.61 -2.37 16 4 C 0.13 5.24 3.78 45.52 0.17 5.41 16 5 H 0.06 2.74 7.42 -2.39 -0.02 2.72 16 6 N -0.73 -32.73 4.77 -444.31 -2.12 -34.84 16 7 C 0.54 31.49 7.75 86.36 0.67 32.16 16 8 O -0.63 -42.99 14.62 -4.31 -0.06 -43.05 16 9 C -0.57 -32.33 9.54 24.83 0.24 -32.10 16 10 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 11 C 0.03 1.57 5.50 85.31 0.47 2.03 16 12 N -0.82 -50.80 11.83 21.84 0.26 -50.54 16 13 Si 1.00 40.88 29.56 68.60 2.03 42.90 16 14 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 17 C -0.17 -5.82 7.37 31.18 0.23 -5.59 16 18 C 0.09 2.57 3.62 31.18 0.11 2.68 16 19 H 0.10 2.46 7.72 -2.39 -0.02 2.44 16 20 O -0.37 -9.69 9.46 -148.98 -1.41 -11.10 16 21 C 0.10 2.05 5.90 71.24 0.42 2.47 16 22 C -0.10 -2.16 5.51 -19.86 -0.11 -2.27 16 23 C -0.11 -2.01 9.70 22.27 0.22 -1.80 16 24 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 27 C -0.12 -2.32 9.70 22.27 0.22 -2.11 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.52 6.59 -2.39 -0.02 1.51 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.55 7.22 -2.39 -0.02 1.53 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.39 15.10 7.12 -92.71 -0.66 14.44 16 35 H 0.27 15.37 8.29 -92.70 -0.77 14.60 16 36 H 0.09 3.00 7.64 -2.39 -0.02 2.98 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 40 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -76.41 365.44 3.49 -72.92 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.33 Total: 35.69 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.46 Total: -11.99 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -1.86 Total: -85.38 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.47 Total: -54.15 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -76.41 3.49 -72.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -76.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds