Wall clock time and date at job start Tue Mar 31 2020 07:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 112.90588 * 2 1 4 4 C 1.53780 * 113.61377 * 228.75298 * 2 1 3 5 5 H 1.09002 * 113.61699 * 105.46818 * 4 2 1 6 6 N 1.46499 * 113.61479 * 334.56914 * 4 2 1 7 7 C 1.34772 * 120.00268 * 155.00243 * 6 4 2 8 8 O 1.21692 * 119.99995 * 359.97438 * 7 6 4 9 9 C 1.46372 * 120.00133 * 179.97438 * 7 6 4 10 10 H 1.08001 * 120.00331 * 353.93513 * 9 7 6 11 11 C 1.40057 * 120.00005 * 173.93570 * 9 7 6 12 12 N 1.30667 * 119.99950 * 6.14733 * 11 9 7 13 13 Si 1.86803 * 119.99824 * 186.14990 * 11 9 7 14 14 H 1.48502 * 109.47113 * 94.98507 * 13 11 9 15 15 H 1.48500 * 109.46988 * 214.98542 * 13 11 9 16 16 H 1.48497 * 109.47038 * 334.98264 * 13 11 9 17 17 C 1.53777 * 87.08027 * 220.01632 * 4 2 1 18 18 C 1.53773 * 87.08161 * 25.43488 * 17 4 2 19 19 H 1.08998 * 113.69659 * 89.12750 * 18 17 4 20 20 O 1.42908 * 113.61148 * 220.01934 * 18 17 4 21 21 C 1.42905 * 113.99849 * 247.49229 * 20 18 17 22 22 C 1.50699 * 109.47106 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99966 * 89.99864 * 22 21 20 24 24 C 1.38233 * 119.99965 * 179.97438 * 23 22 21 25 25 C 1.38234 * 119.99976 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.00120 * 0.07179 * 25 24 23 27 27 C 1.38233 * 119.99854 * 359.88514 * 26 25 24 28 28 H 1.09004 * 109.47166 * 308.24722 * 1 2 3 29 29 H 1.09005 * 109.47683 * 68.24705 * 1 2 3 30 30 H 1.08996 * 109.47255 * 188.25172 * 1 2 3 31 31 H 1.09005 * 109.46958 * 171.74575 * 3 2 1 32 32 H 1.08990 * 109.47681 * 291.75018 * 3 2 1 33 33 H 1.09002 * 109.46860 * 51.75571 * 3 2 1 34 34 H 0.97007 * 119.99780 * 334.99783 * 6 4 2 35 35 H 0.97001 * 119.99783 * 179.97438 * 12 11 9 36 36 H 1.08995 * 113.61515 * 270.87803 * 17 4 2 37 37 H 1.09006 * 113.61202 * 139.98174 * 17 4 2 38 38 H 1.09007 * 109.46796 * 60.00254 * 21 20 18 39 39 H 1.08998 * 109.47157 * 300.00528 * 21 20 18 40 40 H 1.07996 * 119.99728 * 359.97438 * 23 22 21 41 41 H 1.07994 * 120.00086 * 179.72643 * 24 23 22 42 42 H 1.07999 * 120.00285 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00067 * 179.97438 * 26 25 24 44 44 H 1.08009 * 120.00086 * 180.11260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 2.5649 -0.3987 -1.9146 6 7 1.2703 -2.0370 -1.4488 7 6 1.4123 -2.6154 -2.6578 8 8 2.2676 -2.2170 -3.4262 9 6 0.5377 -3.7229 -3.0465 10 1 -0.1545 -4.1413 -2.3309 11 6 0.5986 -4.2401 -4.3467 12 7 1.5160 -3.8175 -5.1756 13 14 -0.6318 -5.5340 -4.8957 14 1 -1.7663 -4.8748 -5.5911 15 1 0.0313 -6.4859 -5.8227 16 1 -1.1385 -6.2700 -3.7096 17 6 3.1923 -1.3135 -0.0001 18 6 2.1460 -0.9292 1.0592 19 1 1.4940 -1.7528 1.3499 20 8 2.6954 -0.2340 2.1805 21 6 2.6467 -0.9725 3.4029 22 6 3.2484 -0.1485 4.5119 23 6 2.4476 0.6950 5.2589 24 6 2.9995 1.4505 6.2765 25 6 4.3523 1.3628 6.5468 26 6 5.1535 0.5208 5.7985 27 6 4.6015 -0.2353 4.7815 28 1 -0.3634 0.6362 0.8071 29 1 -0.3634 0.3809 -0.9545 30 1 -0.3633 -1.0170 0.1475 31 1 3.2038 1.3482 0.1475 32 1 1.9162 1.8923 -0.9544 33 1 1.6809 1.9916 0.8071 34 1 0.5883 -2.3545 -0.8363 35 1 1.5584 -4.1760 -6.0760 36 1 4.0710 -0.6687 -0.0002 37 1 3.4443 -2.3740 -0.0002 38 1 3.2107 -1.8985 3.2907 39 1 1.6099 -1.2057 3.6455 40 1 1.3908 0.7638 5.0474 41 1 2.3747 2.1128 6.8572 42 1 4.7836 1.9534 7.3416 43 1 6.2106 0.4526 6.0094 44 1 5.2271 -0.8946 4.1980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187571528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:04 Heat of formation + Delta-G solvation = -44.448373 kcal Electronic energy + Delta-G solvation = -24335.524182 eV Core-core repulsion = 20832.214655 eV Total energy + Delta-G solvation = -3503.309527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.15820 -39.35624 -37.06705 -35.97066 -32.62600 -32.02079 -31.49515 -31.09418 -29.96870 -27.14784 -26.52760 -26.02151 -23.49967 -22.77294 -22.16301 -21.48275 -19.90519 -18.18910 -17.28268 -16.89495 -16.46469 -15.75030 -15.57192 -15.30720 -14.89655 -14.66968 -14.32296 -14.01293 -13.60511 -13.39498 -13.13663 -13.08835 -12.91903 -12.52456 -12.38684 -12.13286 -11.88203 -11.81284 -11.57236 -11.38202 -11.21635 -11.15875 -11.08570 -10.94636 -10.61712 -10.47836 -10.21990 -10.13211 -9.74592 -9.13508 -9.09194 -9.00172 -8.86043 -7.62782 -7.50498 -6.20650 -4.65135 1.08496 1.21134 3.12924 3.20200 3.23471 3.43773 4.03858 4.09185 4.54648 4.59478 4.62741 4.73144 4.78554 4.83493 4.92010 4.95934 5.13664 5.19879 5.26513 5.31185 5.40031 5.47499 5.53393 5.64428 5.77840 5.84867 5.87257 5.96855 6.02768 6.10117 6.16728 6.24631 6.25789 6.29606 6.31651 6.37915 6.43433 6.59139 6.68108 6.72755 6.78692 7.37791 7.42509 7.91317 8.10854 8.32580 9.01390 9.52025 10.58890 10.77520 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.002675 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.614133 B =10464.396984 C =10571.948358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.112 4.112 4 C 0.150 3.850 5 H 0.096 0.904 6 N -0.747 5.747 7 C 0.557 3.443 8 O -0.579 6.579 9 C -0.546 4.546 10 H 0.067 0.933 11 C 0.088 3.912 12 N -0.767 5.767 13 Si 0.907 3.093 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.171 4.171 18 C 0.072 3.928 19 H 0.083 0.917 20 O -0.363 6.363 21 C 0.099 3.901 22 C -0.084 4.084 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.099 4.099 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.379 0.621 35 H 0.268 0.732 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 8.134 21.022 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.170 4.170 4 C 0.042 3.958 5 H 0.114 0.886 6 N -0.400 5.400 7 C 0.361 3.639 8 O -0.461 6.461 9 C -0.583 4.583 10 H 0.085 0.915 11 C -0.132 4.132 12 N -0.395 5.395 13 Si 0.732 3.268 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.210 4.210 18 C 0.014 3.986 19 H 0.101 0.899 20 O -0.283 6.283 21 C 0.023 3.977 22 C -0.084 4.084 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.117 4.117 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.212 0.788 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.183 8.580 20.218 22.071 hybrid contribution -1.003 -1.097 0.140 1.493 sum 1.179 7.483 20.358 21.722 Atomic orbital electron populations 1.21630 0.94028 1.01465 1.01695 1.22598 0.95610 0.96003 0.95249 1.21327 1.00890 0.93721 1.01048 1.21287 0.90722 0.88846 0.94926 0.88559 1.45941 1.38060 1.36342 1.19706 1.18234 0.84138 0.82907 0.78650 1.90600 1.37557 1.66528 1.51445 1.20866 1.22404 1.17337 0.97695 0.91470 1.25699 0.94893 0.96231 0.96360 1.70026 1.27877 1.36232 1.05404 0.86374 0.80827 0.80590 0.79055 1.19797 1.20459 1.18927 1.23979 0.98439 1.01936 0.96666 1.23974 0.95740 0.94618 0.84260 0.89865 1.88015 1.82114 1.42420 1.15717 1.21325 0.99230 0.93428 0.83752 1.19693 0.93992 0.98358 0.96369 1.21083 0.99971 0.95452 0.95260 1.21137 0.95360 0.99693 0.98129 1.21175 0.94025 0.98796 0.99697 1.21152 0.99867 0.97049 0.96188 1.21114 0.94377 0.99085 0.97121 0.93149 0.91969 0.92570 0.92161 0.92684 0.92580 0.78842 0.92107 0.89535 0.91180 0.92575 0.92693 0.85972 0.86052 0.86183 0.86013 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.64 37.16 0.32 -1.53 16 2 C -0.09 -1.42 1.34 -153.70 -0.21 -1.63 16 3 C -0.11 -1.58 8.42 37.16 0.31 -1.27 16 4 C 0.15 2.89 3.78 -67.12 -0.25 2.64 16 5 H 0.10 2.13 7.42 -51.93 -0.39 1.74 16 6 N -0.75 -16.33 4.77 -54.43 -0.26 -16.59 16 7 C 0.56 15.63 7.74 -12.99 -0.10 15.53 16 8 O -0.58 -18.64 14.65 5.20 0.08 -18.56 16 9 C -0.55 -15.26 9.54 -35.63 -0.34 -15.60 16 10 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 11 C 0.09 2.44 5.49 -17.37 -0.10 2.35 16 12 N -0.77 -22.94 11.85 55.55 0.66 -22.28 16 13 Si 0.91 20.03 29.56 -169.99 -5.03 15.01 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 17 C -0.17 -2.88 7.36 -25.93 -0.19 -3.07 16 18 C 0.07 1.04 3.61 -25.92 -0.09 0.95 16 19 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 20 O -0.36 -5.04 9.49 -35.23 -0.33 -5.38 16 21 C 0.10 1.14 5.90 36.01 0.21 1.35 16 22 C -0.08 -0.93 5.51 -104.63 -0.58 -1.51 16 23 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 24 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.78 6.55 -51.93 -0.34 0.44 16 31 H 0.06 0.86 7.25 -51.93 -0.38 0.48 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.38 7.32 7.08 -40.82 -0.29 7.04 16 35 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 36 H 0.09 1.41 7.63 -51.93 -0.40 1.01 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -33.82 365.47 -9.15 -42.97 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.80 Total: 8.39 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.97 Total: -9.06 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.40 Total: -38.88 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.26 Total: -23.94 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.82 -9.15 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.475 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds