Wall clock time and date at job start Tue Mar 31 2020 07:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 112.90588 * 2 1 4 4 C 1.53780 * 113.61377 * 228.75298 * 2 1 3 5 5 H 1.09002 * 113.61699 * 105.46818 * 4 2 1 6 6 N 1.46499 * 113.61479 * 334.56914 * 4 2 1 7 7 C 1.34772 * 120.00268 * 155.00243 * 6 4 2 8 8 O 1.21692 * 119.99995 * 359.97438 * 7 6 4 9 9 C 1.46372 * 120.00133 * 179.97438 * 7 6 4 10 10 H 1.08001 * 120.00331 * 353.93513 * 9 7 6 11 11 C 1.40057 * 120.00005 * 173.93570 * 9 7 6 12 12 N 1.30667 * 119.99950 * 6.14733 * 11 9 7 13 13 Si 1.86803 * 119.99824 * 186.14990 * 11 9 7 14 14 H 1.48502 * 109.47113 * 94.98507 * 13 11 9 15 15 H 1.48500 * 109.46988 * 214.98542 * 13 11 9 16 16 H 1.48497 * 109.47038 * 334.98264 * 13 11 9 17 17 C 1.53777 * 87.08027 * 220.01632 * 4 2 1 18 18 C 1.53773 * 87.08161 * 25.43488 * 17 4 2 19 19 H 1.08998 * 113.69659 * 89.12750 * 18 17 4 20 20 O 1.42908 * 113.61148 * 220.01934 * 18 17 4 21 21 C 1.42905 * 113.99849 * 247.49229 * 20 18 17 22 22 C 1.50699 * 109.47106 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99966 * 89.99864 * 22 21 20 24 24 C 1.38233 * 119.99965 * 179.97438 * 23 22 21 25 25 C 1.38234 * 119.99976 * 0.02562 * 24 23 22 26 26 C 1.38235 * 120.00120 * 0.07179 * 25 24 23 27 27 C 1.38233 * 119.99854 * 359.88514 * 26 25 24 28 28 H 1.09004 * 109.47166 * 308.24722 * 1 2 3 29 29 H 1.09005 * 109.47683 * 68.24705 * 1 2 3 30 30 H 1.08996 * 109.47255 * 188.25172 * 1 2 3 31 31 H 1.09005 * 109.46958 * 171.74575 * 3 2 1 32 32 H 1.08990 * 109.47681 * 291.75018 * 3 2 1 33 33 H 1.09002 * 109.46860 * 51.75571 * 3 2 1 34 34 H 0.97007 * 119.99780 * 334.99783 * 6 4 2 35 35 H 0.97001 * 119.99783 * 179.97438 * 12 11 9 36 36 H 1.08995 * 113.61515 * 270.87803 * 17 4 2 37 37 H 1.09006 * 113.61202 * 139.98174 * 17 4 2 38 38 H 1.09007 * 109.46796 * 60.00254 * 21 20 18 39 39 H 1.08998 * 109.47157 * 300.00528 * 21 20 18 40 40 H 1.07996 * 119.99728 * 359.97438 * 23 22 21 41 41 H 1.07994 * 120.00086 * 179.72643 * 24 23 22 42 42 H 1.07999 * 120.00285 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00067 * 179.97438 * 26 25 24 44 44 H 1.08009 * 120.00086 * 180.11260 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 1 2.5649 -0.3987 -1.9146 6 7 1.2703 -2.0370 -1.4488 7 6 1.4123 -2.6154 -2.6578 8 8 2.2676 -2.2170 -3.4262 9 6 0.5377 -3.7229 -3.0465 10 1 -0.1545 -4.1413 -2.3309 11 6 0.5986 -4.2401 -4.3467 12 7 1.5160 -3.8175 -5.1756 13 14 -0.6318 -5.5340 -4.8957 14 1 -1.7663 -4.8748 -5.5911 15 1 0.0313 -6.4859 -5.8227 16 1 -1.1385 -6.2700 -3.7096 17 6 3.1923 -1.3135 -0.0001 18 6 2.1460 -0.9292 1.0592 19 1 1.4940 -1.7528 1.3499 20 8 2.6954 -0.2340 2.1805 21 6 2.6467 -0.9725 3.4029 22 6 3.2484 -0.1485 4.5119 23 6 2.4476 0.6950 5.2589 24 6 2.9995 1.4505 6.2765 25 6 4.3523 1.3628 6.5468 26 6 5.1535 0.5208 5.7985 27 6 4.6015 -0.2353 4.7815 28 1 -0.3634 0.6362 0.8071 29 1 -0.3634 0.3809 -0.9545 30 1 -0.3633 -1.0170 0.1475 31 1 3.2038 1.3482 0.1475 32 1 1.9162 1.8923 -0.9544 33 1 1.6809 1.9916 0.8071 34 1 0.5883 -2.3545 -0.8363 35 1 1.5584 -4.1760 -6.0760 36 1 4.0710 -0.6687 -0.0002 37 1 3.4443 -2.3740 -0.0002 38 1 3.2107 -1.8985 3.2907 39 1 1.6099 -1.2057 3.6455 40 1 1.3908 0.7638 5.0474 41 1 2.3747 2.1128 6.8572 42 1 4.7836 1.9534 7.3416 43 1 6.2106 0.4526 6.0094 44 1 5.2271 -0.8946 4.1980 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187571528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:01 Heat of formation + Delta-G solvation = -65.288647 kcal Electronic energy + Delta-G solvation = -24336.427884 eV Core-core repulsion = 20832.214655 eV Total energy + Delta-G solvation = -3504.213229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -41.50782 -40.13377 -38.85438 -37.34431 -34.69624 -33.57756 -32.64834 -31.77550 -31.31537 -28.62662 -28.14944 -27.06867 -24.95388 -23.56316 -23.43496 -22.23356 -21.82748 -19.80818 -18.85024 -17.96962 -17.62018 -17.31432 -16.63829 -16.44328 -16.35690 -15.89678 -15.65159 -15.35384 -14.84686 -14.52438 -14.40580 -14.25223 -13.98163 -13.94747 -13.84288 -13.43059 -13.11571 -13.09098 -12.93820 -12.84084 -12.66599 -12.57729 -12.47229 -12.09790 -11.98207 -11.89770 -11.69741 -11.50196 -11.10431 -10.92994 -10.28371 -9.86303 -9.80798 -9.73719 -9.41304 -8.29924 -6.84987 0.36003 0.51462 1.40318 1.41427 1.57298 2.24248 2.46772 2.60084 2.99312 3.15270 3.44338 3.50256 3.64852 3.84584 3.94027 4.03435 4.06090 4.16753 4.29963 4.31571 4.36617 4.39207 4.50457 4.65931 4.67231 4.76996 4.79349 4.83155 4.92405 4.96403 5.00781 5.09253 5.13530 5.16975 5.17387 5.32530 5.43510 5.45079 5.56731 5.62267 5.69718 5.88998 6.11209 6.22346 6.27972 6.35949 6.87103 7.55838 8.50328 8.67953 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.029202 B = 0.002675 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.614133 B =10464.396984 C =10571.948358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.109 4.109 4 C 0.131 3.869 5 H 0.057 0.943 6 N -0.731 5.731 7 C 0.541 3.459 8 O -0.633 6.633 9 C -0.572 4.572 10 H 0.088 0.912 11 C 0.028 3.972 12 N -0.822 5.822 13 Si 0.998 3.002 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.247 1.247 17 C -0.168 4.168 18 C 0.092 3.908 19 H 0.097 0.903 20 O -0.370 6.370 21 C 0.096 3.904 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.117 4.117 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 8.074 23.535 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.166 4.166 4 C 0.024 3.976 5 H 0.076 0.924 6 N -0.384 5.384 7 C 0.345 3.655 8 O -0.520 6.520 9 C -0.609 4.609 10 H 0.106 0.894 11 C -0.187 4.187 12 N -0.452 5.452 13 Si 0.817 3.183 14 H -0.188 1.188 15 H -0.199 1.199 16 H -0.170 1.170 17 C -0.208 4.208 18 C 0.034 3.966 19 H 0.114 0.886 20 O -0.289 6.289 21 C 0.020 3.980 22 C -0.104 4.104 23 C -0.129 4.129 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.135 4.135 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.459 8.540 22.808 24.359 hybrid contribution -0.377 -0.994 -0.540 1.192 sum 0.082 7.546 22.269 23.513 Atomic orbital electron populations 1.21624 0.92718 1.02245 1.02014 1.22502 0.96597 0.95929 0.93124 1.21315 1.00621 0.93087 1.01625 1.21426 0.92130 0.89126 0.94920 0.92422 1.45500 1.38383 1.36328 1.18214 1.18611 0.83666 0.83365 0.79810 1.90555 1.39670 1.68164 1.53597 1.21407 1.22854 1.17717 0.98898 0.89362 1.26982 0.96906 0.98706 0.96089 1.70198 1.30442 1.38350 1.06172 0.85008 0.77423 0.76887 0.78974 1.18803 1.19892 1.17030 1.23922 0.98764 1.01096 0.97008 1.23664 0.94254 0.94449 0.84200 0.88564 1.87999 1.82028 1.42678 1.16225 1.21481 1.00289 0.93423 0.82836 1.19765 0.94490 0.99342 0.96812 1.21296 1.00506 0.95486 0.95589 1.21469 0.95909 0.99545 0.97835 1.21541 0.94029 0.98443 0.99901 1.21440 1.01019 0.96745 0.95778 1.21285 0.94465 0.99787 0.97946 0.90484 0.93303 0.92234 0.92725 0.92956 0.90696 0.77084 0.91607 0.89211 0.92610 0.92461 0.91216 0.85021 0.83819 0.83737 0.84238 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.64 71.98 0.62 -2.80 16 2 C -0.08 -2.39 1.34 -51.66 -0.07 -2.46 16 3 C -0.11 -2.97 8.42 71.98 0.61 -2.37 16 4 C 0.13 5.22 3.78 45.52 0.17 5.39 16 5 H 0.06 2.73 7.42 -2.39 -0.02 2.72 16 6 N -0.73 -32.69 4.77 -444.33 -2.12 -34.81 16 7 C 0.54 31.49 7.74 86.36 0.67 32.16 16 8 O -0.63 -42.99 14.65 -4.32 -0.06 -43.06 16 9 C -0.57 -32.33 9.54 24.83 0.24 -32.09 16 10 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 11 C 0.03 1.58 5.49 85.31 0.47 2.05 16 12 N -0.82 -50.74 11.85 21.84 0.26 -50.49 16 13 Si 1.00 40.90 29.56 68.60 2.03 42.93 16 14 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 17 C -0.17 -5.81 7.36 31.12 0.23 -5.58 16 18 C 0.09 2.57 3.61 31.12 0.11 2.68 16 19 H 0.10 2.46 7.73 -2.39 -0.02 2.44 16 20 O -0.37 -9.69 9.49 -148.98 -1.41 -11.10 16 21 C 0.10 2.05 5.90 71.24 0.42 2.47 16 22 C -0.10 -2.16 5.51 -19.87 -0.11 -2.27 16 23 C -0.11 -2.01 9.70 22.27 0.22 -1.79 16 24 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 27 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 28 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.53 6.55 -2.39 -0.02 1.51 16 31 H 0.05 1.54 7.25 -2.38 -0.02 1.52 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.39 15.10 7.08 -92.70 -0.66 14.44 16 35 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 36 H 0.09 3.00 7.63 -2.39 -0.02 2.99 16 37 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 1.19 8.09 -2.38 -0.02 1.18 16 39 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 40 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -76.42 365.47 3.48 -72.94 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.33 Total: 35.56 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.46 Total: -11.97 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -1.86 Total: -85.30 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.48 Total: -54.16 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -76.42 3.48 -72.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187571528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.648 kcal (2) G-P(sol) polarization free energy of solvation -76.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds