Wall clock time and date at job start Tue Mar 31 2020 10:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99622 * 2 1 4 4 C 1.53003 * 109.47066 * 120.00177 * 3 2 1 5 5 C 1.53005 * 109.47048 * 239.99703 * 3 2 1 6 6 C 1.53002 * 109.47123 * 300.00447 * 5 3 2 7 7 C 1.50691 * 109.47632 * 359.97438 * 3 2 1 8 8 O 1.21284 * 120.00159 * 239.99999 * 7 3 2 9 9 N 1.34772 * 120.00413 * 59.99966 * 7 3 2 10 10 C 1.46500 * 120.00610 * 180.02562 * 9 7 3 11 11 C 1.50695 * 109.47200 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.93412 * 269.72652 * 11 10 9 13 13 C 1.38102 * 120.07171 * 179.72952 * 12 11 10 14 14 C 1.38891 * 119.92487 * 0.56596 * 13 12 11 15 15 O 1.35749 * 120.06559 * 179.68333 * 14 13 12 16 16 C 1.34827 * 116.99816 * 174.48796 * 15 14 13 17 17 H 1.08000 * 119.99941 * 5.05807 * 16 15 14 18 18 C 1.38653 * 119.99851 * 185.05792 * 16 15 14 19 19 N 1.31555 * 120.00143 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00265 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47066 * 89.99921 * 20 18 16 22 22 H 1.48496 * 109.47264 * 209.99675 * 20 18 16 23 23 H 1.48504 * 109.46853 * 330.00082 * 20 18 16 24 24 C 1.38875 * 119.86262 * 359.70808 * 14 13 12 25 25 C 1.38096 * 119.93141 * 359.97438 * 24 14 13 26 26 H 1.08000 * 119.99998 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00160 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00160 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47017 * 299.99769 * 4 3 2 30 30 H 1.09003 * 109.47422 * 59.99824 * 4 3 2 31 31 H 1.09003 * 109.47293 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.46553 * 59.99934 * 5 3 2 33 33 H 1.08994 * 109.47312 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47434 * 59.99211 * 6 5 3 35 35 H 1.08991 * 109.47168 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.46916 * 299.99986 * 6 5 3 37 37 H 0.97008 * 119.99564 * 359.97438 * 9 7 3 38 38 H 1.08994 * 109.47028 * 300.00079 * 10 9 7 39 39 H 1.09007 * 109.46745 * 60.00215 * 10 9 7 40 40 H 1.08001 * 119.96305 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.03602 * 180.27942 * 13 12 11 42 42 H 0.97003 * 120.00661 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03306 * 179.97438 * 24 14 13 44 44 H 1.08000 * 119.96699 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 6 2.9431 1.3862 -1.2493 6 6 3.9374 0.2232 -1.2492 7 6 1.0842 2.4505 -0.0006 8 8 1.0897 3.2525 -0.9104 9 7 0.2023 2.5838 1.0097 10 6 -0.7501 3.6970 1.0089 11 6 -1.6172 3.6172 2.2387 12 6 -2.8054 2.9104 2.2007 13 6 -3.5996 2.8307 3.3277 14 6 -3.2096 3.4711 4.4968 15 8 -3.9912 3.4000 5.6044 16 6 -3.5011 3.9461 6.7355 17 1 -2.5648 4.4840 6.7138 18 6 -4.1990 3.8171 7.9266 19 7 -3.7211 4.3503 9.0302 20 14 -5.8181 2.8861 7.9644 21 1 -5.5580 1.4522 8.2496 22 1 -6.6897 3.4516 9.0253 23 1 -6.4936 3.0144 6.6481 24 6 -2.0187 4.1847 4.5302 25 6 -1.2258 4.2551 3.4017 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.3164 1.3284 2.1393 30 1 3.6515 0.5577 1.2493 31 1 3.4884 2.3300 1.2491 32 1 2.3164 1.3284 -2.1392 33 1 3.4884 2.3299 -1.2491 34 1 3.3924 -0.7208 -1.2491 35 1 4.5637 0.2807 -2.1393 36 1 4.5640 0.2810 -0.3592 37 1 0.1977 1.9421 1.7372 38 1 -0.2054 4.6411 1.0086 39 1 -1.3764 3.6385 0.1187 40 1 -3.1106 2.4171 1.2897 41 1 -4.5251 2.2750 3.2986 42 1 -4.2091 4.2598 9.8636 43 1 -1.7130 4.6840 5.4376 44 1 -0.2997 4.8103 3.4269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188430558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:08 Heat of formation + Delta-G solvation = -26.075210 kcal Electronic energy + Delta-G solvation = -24182.069801 eV Core-core repulsion = 20679.556994 eV Total energy + Delta-G solvation = -3502.512807 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61059 -39.30323 -37.24088 -36.53323 -34.65856 -32.54017 -32.22329 -30.44175 -30.28629 -29.36717 -26.26035 -25.46617 -24.49798 -22.21805 -22.07784 -21.39553 -20.63249 -19.00677 -18.00804 -17.40510 -16.70766 -16.37590 -15.93262 -15.07498 -14.96461 -14.61951 -14.28367 -14.23423 -13.93230 -13.87249 -13.69464 -13.44313 -13.01784 -12.80926 -12.66104 -12.40108 -12.29633 -12.23580 -12.07147 -11.83715 -11.79950 -11.49884 -11.10488 -10.97430 -10.86325 -10.79580 -10.67111 -10.24248 -9.75561 -9.62630 -9.50202 -8.96964 -8.94866 -8.40129 -7.49720 -6.51602 -4.18661 1.93343 2.00573 2.02637 2.60421 3.14984 3.19124 3.29781 3.33844 4.15160 4.33762 4.44444 4.48547 4.71356 4.72910 4.84271 5.00281 5.03905 5.12015 5.12360 5.28004 5.32199 5.34565 5.48370 5.53909 5.62900 5.69882 5.72424 5.72675 5.81373 5.88831 5.97575 6.01033 6.13807 6.22449 6.35451 6.42099 6.45867 6.47532 6.65636 6.87935 7.10261 7.16736 7.47494 7.53716 7.68950 7.92495 8.20066 8.82929 9.43522 10.55554 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002725 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.959254 B =10272.654661 C =10320.979131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.052 4.052 4 C -0.141 4.141 5 C -0.095 4.095 6 C -0.155 4.155 7 C 0.522 3.478 8 O -0.543 6.543 9 N -0.721 5.721 10 C 0.175 3.825 11 C -0.206 4.206 12 C -0.056 4.056 13 C -0.195 4.195 14 C 0.167 3.833 15 O -0.213 6.213 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.224 4.224 25 C -0.052 4.052 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.404 0.596 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.281 0.719 43 H 0.134 0.866 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -8.346 -16.023 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.055 4.055 4 C -0.198 4.198 5 C -0.133 4.133 6 C -0.212 4.212 7 C 0.308 3.692 8 O -0.421 6.421 9 N -0.373 5.373 10 C 0.053 3.947 11 C -0.207 4.207 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.113 3.887 15 O -0.117 6.117 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.512 5.512 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.071 4.071 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.239 0.761 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.152 0.848 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.592 -7.787 -16.370 20.995 hybrid contribution -0.663 -0.577 0.727 1.140 sum 9.929 -8.364 -15.643 20.329 Atomic orbital electron populations 1.24394 0.96240 1.03326 0.99334 1.22698 0.95685 0.96835 1.01446 1.20008 0.95110 0.91867 0.98481 1.21892 0.99510 1.02971 0.95428 1.21314 0.96856 0.99265 0.95876 1.21899 0.99044 0.98384 1.01869 1.20446 0.80977 0.86003 0.81801 1.90684 1.71148 1.44225 1.35998 1.46550 1.35329 1.30309 1.25111 1.20013 0.89609 0.89197 0.95891 1.19271 0.98194 1.07903 0.95340 1.20526 0.93375 0.96862 0.96732 1.20212 1.02631 1.06570 0.91972 1.19183 0.89480 0.92542 0.87448 1.83574 1.41509 1.70122 1.16470 1.20786 1.09059 1.33772 0.83098 0.87500 1.24488 0.99280 0.96641 0.93518 1.69640 1.39370 1.42864 0.99373 0.86175 0.82123 0.79842 0.78751 1.19797 1.20673 1.18311 1.21275 0.96949 1.06067 0.99987 1.20696 0.97940 0.96646 0.91834 0.87963 0.87136 0.86219 0.91834 0.90936 0.91802 0.91258 0.91113 0.92477 0.92582 0.92297 0.76070 0.91454 0.91472 0.86803 0.86368 0.90889 0.84799 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 13.17 29.01 0.38 -1.46 16 2 C -0.15 -1.30 7.99 -36.03 -0.29 -1.58 16 3 C -0.05 -0.50 0.62 -156.81 -0.10 -0.60 16 4 C -0.14 -1.16 8.00 37.16 0.30 -0.86 16 5 C -0.10 -0.90 4.27 -26.73 -0.11 -1.01 16 6 C -0.15 -1.07 9.30 37.16 0.35 -0.73 16 7 C 0.52 6.61 5.34 -10.99 -0.06 6.55 16 8 O -0.54 -8.78 15.98 5.55 0.09 -8.69 16 9 N -0.72 -8.61 3.72 -61.48 -0.23 -8.84 16 10 C 0.18 2.32 5.80 -5.20 -0.03 2.29 16 11 C -0.21 -3.10 5.25 -104.58 -0.55 -3.65 16 12 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.19 -3.58 9.99 -39.39 -0.39 -3.97 16 14 C 0.17 3.62 6.65 -39.10 -0.26 3.36 16 15 O -0.21 -5.37 8.59 0.06 0.00 -5.37 16 16 C -0.39 -10.65 9.95 30.89 0.31 -10.34 16 17 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -24.61 13.96 55.48 0.77 -23.83 16 20 Si 0.91 21.00 28.62 -169.99 -4.86 16.13 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.26 -6.03 7.11 56.52 0.40 -5.62 16 24 C -0.22 -4.51 9.17 -39.40 -0.36 -4.87 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 26 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 27 H 0.11 1.20 5.18 -52.49 -0.27 0.93 16 28 H 0.12 0.84 7.00 -52.49 -0.37 0.48 16 29 H 0.06 0.53 7.57 -51.93 -0.39 0.13 16 30 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.06 0.36 6.62 -51.93 -0.34 0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 37 H 0.40 4.47 7.22 -40.82 -0.29 4.17 16 38 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.28 7.28 8.31 -40.82 -0.34 6.95 16 43 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -29.43 359.27 -6.77 -36.20 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.27 Total: 6.70 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.68 Total: -17.71 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.55 Total: -32.67 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.43 -6.77 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188430558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.127 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds