Wall clock time and date at job start Tue Mar 31 2020 10:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99622 * 2 1 4 4 C 1.53003 * 109.47066 * 120.00177 * 3 2 1 5 5 C 1.53005 * 109.47048 * 239.99703 * 3 2 1 6 6 C 1.53002 * 109.47123 * 300.00447 * 5 3 2 7 7 C 1.50691 * 109.47632 * 359.97438 * 3 2 1 8 8 O 1.21284 * 120.00159 * 239.99999 * 7 3 2 9 9 N 1.34772 * 120.00413 * 59.99966 * 7 3 2 10 10 C 1.46500 * 120.00610 * 180.02562 * 9 7 3 11 11 C 1.50695 * 109.47200 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.93412 * 269.72652 * 11 10 9 13 13 C 1.38102 * 120.07171 * 179.72952 * 12 11 10 14 14 C 1.38891 * 119.92487 * 0.56596 * 13 12 11 15 15 O 1.35749 * 120.06559 * 179.68333 * 14 13 12 16 16 C 1.34827 * 116.99816 * 174.48796 * 15 14 13 17 17 H 1.08000 * 119.99941 * 5.05807 * 16 15 14 18 18 C 1.38653 * 119.99851 * 185.05792 * 16 15 14 19 19 N 1.31555 * 120.00143 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00265 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47066 * 89.99921 * 20 18 16 22 22 H 1.48496 * 109.47264 * 209.99675 * 20 18 16 23 23 H 1.48504 * 109.46853 * 330.00082 * 20 18 16 24 24 C 1.38875 * 119.86262 * 359.70808 * 14 13 12 25 25 C 1.38096 * 119.93141 * 359.97438 * 24 14 13 26 26 H 1.08000 * 119.99998 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00160 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00160 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47017 * 299.99769 * 4 3 2 30 30 H 1.09003 * 109.47422 * 59.99824 * 4 3 2 31 31 H 1.09003 * 109.47293 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.46553 * 59.99934 * 5 3 2 33 33 H 1.08994 * 109.47312 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47434 * 59.99211 * 6 5 3 35 35 H 1.08991 * 109.47168 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.46916 * 299.99986 * 6 5 3 37 37 H 0.97008 * 119.99564 * 359.97438 * 9 7 3 38 38 H 1.08994 * 109.47028 * 300.00079 * 10 9 7 39 39 H 1.09007 * 109.46745 * 60.00215 * 10 9 7 40 40 H 1.08001 * 119.96305 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.03602 * 180.27942 * 13 12 11 42 42 H 0.97003 * 120.00661 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.03306 * 179.97438 * 24 14 13 44 44 H 1.08000 * 119.96699 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 6 2.9431 1.3862 -1.2493 6 6 3.9374 0.2232 -1.2492 7 6 1.0842 2.4505 -0.0006 8 8 1.0897 3.2525 -0.9104 9 7 0.2023 2.5838 1.0097 10 6 -0.7501 3.6970 1.0089 11 6 -1.6172 3.6172 2.2387 12 6 -2.8054 2.9104 2.2007 13 6 -3.5996 2.8307 3.3277 14 6 -3.2096 3.4711 4.4968 15 8 -3.9912 3.4000 5.6044 16 6 -3.5011 3.9461 6.7355 17 1 -2.5648 4.4840 6.7138 18 6 -4.1990 3.8171 7.9266 19 7 -3.7211 4.3503 9.0302 20 14 -5.8181 2.8861 7.9644 21 1 -5.5580 1.4522 8.2496 22 1 -6.6897 3.4516 9.0253 23 1 -6.4936 3.0144 6.6481 24 6 -2.0187 4.1847 4.5302 25 6 -1.2258 4.2551 3.4017 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.3164 1.3284 2.1393 30 1 3.6515 0.5577 1.2493 31 1 3.4884 2.3300 1.2491 32 1 2.3164 1.3284 -2.1392 33 1 3.4884 2.3299 -1.2491 34 1 3.3924 -0.7208 -1.2491 35 1 4.5637 0.2807 -2.1393 36 1 4.5640 0.2810 -0.3592 37 1 0.1977 1.9421 1.7372 38 1 -0.2054 4.6411 1.0086 39 1 -1.3764 3.6385 0.1187 40 1 -3.1106 2.4171 1.2897 41 1 -4.5251 2.2750 3.2986 42 1 -4.2091 4.2598 9.8636 43 1 -1.7130 4.6840 5.4376 44 1 -0.2997 4.8103 3.4269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188430558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:45 Heat of formation + Delta-G solvation = -42.502215 kcal Electronic energy + Delta-G solvation = -24182.782130 eV Core-core repulsion = 20679.556994 eV Total energy + Delta-G solvation = -3503.225135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 35.83 seconds Orbital eigenvalues (eV) -41.60371 -40.88180 -38.72323 -37.48726 -35.83923 -34.46156 -33.00994 -31.89142 -31.52924 -30.19685 -27.81547 -26.54101 -25.75453 -23.73796 -22.81955 -22.43000 -21.97002 -20.00664 -19.79212 -19.11425 -17.65892 -17.28737 -16.97603 -16.62352 -16.27472 -15.80474 -15.66283 -15.51118 -15.26223 -15.03468 -14.78492 -14.55522 -14.34420 -14.22697 -14.07018 -13.67063 -13.31853 -13.13867 -13.06205 -12.86286 -12.61589 -12.58681 -12.50469 -12.46955 -12.33549 -11.94918 -11.74912 -11.36774 -11.31224 -10.95930 -10.75070 -10.33307 -10.01044 -9.84948 -9.10463 -8.51506 -6.24636 0.47406 0.53050 1.32254 1.33871 1.35398 1.52006 1.60429 2.23804 2.27097 2.78332 3.03941 3.13354 3.61303 3.71935 3.82012 3.97740 4.00804 4.11375 4.12097 4.38063 4.42788 4.48988 4.52534 4.62966 4.68906 4.72532 4.78389 4.85685 4.93295 5.00556 5.07010 5.11853 5.20229 5.20370 5.32088 5.32873 5.39366 5.52434 5.52594 5.66540 5.69038 5.77291 5.77861 5.86915 6.17534 6.52691 6.82628 7.19762 7.55360 8.59789 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026435 B = 0.002725 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.959254 B =10272.654661 C =10320.979131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.049 4.049 4 C -0.140 4.140 5 C -0.094 4.094 6 C -0.150 4.150 7 C 0.521 3.479 8 O -0.581 6.581 9 N -0.713 5.713 10 C 0.179 3.821 11 C -0.174 4.174 12 C -0.045 4.045 13 C -0.190 4.190 14 C 0.130 3.870 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.237 4.237 25 C -0.051 4.051 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.410 0.590 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.285 0.715 43 H 0.109 0.891 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 -10.500 -18.421 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.161 4.161 3 C -0.052 4.052 4 C -0.197 4.197 5 C -0.132 4.132 6 C -0.207 4.207 7 C 0.308 3.692 8 O -0.461 6.461 9 N -0.365 5.365 10 C 0.057 3.943 11 C -0.175 4.175 12 C -0.063 4.063 13 C -0.210 4.210 14 C 0.080 3.920 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.256 4.256 25 C -0.069 4.069 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.171 0.829 41 H 0.150 0.850 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.187 -9.955 -18.799 24.034 hybrid contribution -0.621 0.123 1.102 1.271 sum 10.566 -9.832 -17.697 22.836 Atomic orbital electron populations 1.24427 0.96562 1.03292 1.00144 1.22837 0.95571 0.96994 1.00648 1.20042 0.94666 0.91127 0.99339 1.21920 0.99625 1.03669 0.94486 1.21295 0.97014 0.99873 0.95045 1.21877 0.98607 0.97511 1.02705 1.21000 0.80955 0.86244 0.80959 1.90671 1.72205 1.45810 1.37389 1.46396 1.34922 1.29901 1.25299 1.19929 0.89715 0.89815 0.94871 1.19521 0.97806 1.05041 0.95097 1.20932 0.92465 0.95861 0.97056 1.20514 1.03426 1.05676 0.91335 1.19735 0.90338 0.94240 0.87692 1.83523 1.42637 1.71998 1.16670 1.20709 1.08530 1.33915 0.84464 0.89978 1.25285 1.02679 0.97731 0.93082 1.69725 1.41210 1.45224 1.00061 0.85223 0.78086 0.78823 0.78642 1.18942 1.19401 1.18605 1.21255 0.97490 1.06443 1.00458 1.20903 0.98199 0.96692 0.91129 0.86555 0.88703 0.83869 0.91779 0.88772 0.92343 0.92884 0.92426 0.91476 0.92081 0.91220 0.75270 0.91495 0.90592 0.82925 0.85035 0.90525 0.87270 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.28 13.17 67.78 0.89 -2.39 16 2 C -0.14 -2.03 7.99 25.64 0.21 -1.82 16 3 C -0.05 -0.83 0.62 -53.67 -0.03 -0.86 16 4 C -0.14 -1.92 8.00 71.98 0.58 -1.35 16 5 C -0.09 -1.61 4.27 30.60 0.13 -1.48 16 6 C -0.15 -1.64 9.30 71.98 0.67 -0.97 16 7 C 0.52 12.20 5.34 87.65 0.47 12.67 16 8 O -0.58 -18.09 15.98 -3.04 -0.05 -18.14 16 9 N -0.71 -15.19 3.72 -466.81 -1.74 -16.92 16 10 C 0.18 4.22 5.80 85.63 0.50 4.72 16 11 C -0.17 -4.73 5.25 -19.84 -0.10 -4.83 16 12 C -0.04 -1.23 9.69 22.25 0.22 -1.01 16 13 C -0.19 -6.66 9.99 22.39 0.22 -6.43 16 14 C 0.13 5.71 6.65 22.58 0.15 5.86 16 15 O -0.24 -12.59 8.59 -22.70 -0.19 -12.78 16 16 C -0.40 -22.89 9.95 67.92 0.68 -22.21 16 17 H 0.08 4.92 5.44 -2.91 -0.02 4.91 16 18 C 0.01 0.62 5.49 84.83 0.47 1.09 16 19 N -0.92 -54.07 13.96 21.61 0.30 -53.77 16 20 Si 0.97 44.23 28.62 68.60 1.96 46.19 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.24 -9.80 9.17 22.39 0.21 -9.59 16 25 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 26 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 27 H 0.09 1.80 5.18 -2.91 -0.02 1.78 16 28 H 0.14 1.41 7.00 -2.91 -0.02 1.39 16 29 H 0.06 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.09 0.91 6.43 -2.39 -0.02 0.89 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.06 8.10 -2.39 -0.02 1.05 16 33 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.07 0.61 6.62 -2.38 -0.02 0.60 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.62 6.43 -2.39 -0.02 0.61 16 37 H 0.41 7.87 7.22 -92.70 -0.67 7.20 16 38 H 0.07 1.65 8.08 -2.39 -0.02 1.64 16 39 H 0.08 1.75 8.08 -2.38 -0.02 1.73 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.11 5.04 5.64 -2.91 -0.02 5.02 16 44 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.18 359.27 6.08 -61.10 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.34 Total: 24.36 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 5.45 Total: -30.03 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.43 Total: -70.70 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.24 Total: -30.92 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.96 Total: 46.19 kcal Total: -67.18 6.08 -61.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188430558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.596 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.83 seconds