Wall clock time and date at job start Tue Mar 31 2020 09:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 C 1.53003 * 109.87335 * 175.34171 * 3 2 1 5 5 O 1.42906 * 109.46507 * 301.57358 * 4 3 2 6 6 C 1.54364 * 110.03052 * 296.40617 * 3 2 1 7 7 C 1.55158 * 102.92324 * 141.65099 * 6 3 2 8 8 C 1.54910 * 101.61414 * 324.54438 * 7 6 3 9 9 N 1.47025 * 109.88410 * 54.32074 * 3 2 1 10 10 C 1.34777 * 125.64360 * 61.52472 * 9 3 2 11 11 O 1.21544 * 120.00156 * 355.06551 * 10 9 3 12 12 C 1.47887 * 119.99784 * 175.06869 * 10 9 3 13 13 C 1.39923 * 120.02697 * 20.81797 * 12 10 9 14 14 C 1.38323 * 120.35941 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41180 * 0.02562 * 14 13 12 16 16 C 1.40749 * 120.04008 * 359.97438 * 15 14 13 17 17 C 1.41438 * 120.17515 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00574 * 29.65147 * 17 16 15 19 19 C 1.39941 * 119.99831 * 209.64254 * 17 16 15 20 20 N 1.30828 * 120.00008 * 9.65136 * 19 17 16 21 21 Si 1.86797 * 119.99892 * 189.64422 * 19 17 16 22 22 H 1.48494 * 109.47394 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47146 * 120.00668 * 21 19 17 24 24 H 1.48507 * 109.47182 * 240.00264 * 21 19 17 25 25 C 1.38994 * 120.02228 * 200.55038 * 12 10 9 26 26 H 1.09000 * 109.47210 * 297.74001 * 1 2 3 27 27 H 1.09002 * 109.47501 * 57.74996 * 1 2 3 28 28 H 1.09007 * 109.47123 * 177.74822 * 1 2 3 29 29 H 1.08991 * 109.47058 * 240.00520 * 2 1 3 30 30 H 1.08994 * 109.47190 * 119.99523 * 2 1 3 31 31 H 1.08992 * 109.47276 * 61.57369 * 4 3 2 32 32 H 1.09000 * 109.46868 * 181.57626 * 4 3 2 33 33 H 0.96703 * 113.99217 * 180.02562 * 5 4 3 34 34 H 1.09003 * 110.70676 * 23.30473 * 6 3 2 35 35 H 1.08997 * 110.75834 * 260.01879 * 6 3 2 36 36 H 1.09008 * 111.00592 * 206.45269 * 7 6 3 37 37 H 1.08998 * 111.00626 * 82.63982 * 7 6 3 38 38 H 1.09003 * 110.36251 * 155.83014 * 8 7 6 39 39 H 1.09004 * 110.36395 * 278.15186 * 8 7 6 40 40 H 1.08001 * 119.81590 * 0.02562 * 13 12 10 41 41 H 1.08002 * 119.79715 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.97896 * 179.97438 * 15 14 13 43 43 H 0.96994 * 119.99975 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20841 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5654 1.4550 0.1169 5 8 3.9566 0.7847 1.3168 6 6 1.6080 2.1560 -1.2990 7 6 1.2603 3.5868 -0.8098 8 6 0.6493 3.2999 0.5845 9 7 1.4463 2.1828 1.1231 10 6 1.6052 1.8891 2.4288 11 8 2.2136 0.8895 2.7573 12 6 1.0391 2.7831 3.4620 13 6 -0.0001 3.6611 3.1350 14 6 -0.5350 4.5000 4.0961 15 6 -0.0509 4.4812 5.3856 16 6 0.9941 3.6047 5.7332 17 6 1.4930 3.5827 7.0565 18 1 0.8424 3.8273 7.8831 19 6 2.8297 3.2438 7.2947 20 7 3.6646 3.1322 6.2937 21 14 3.4219 2.9511 9.0420 22 1 2.2907 3.1377 9.9858 23 1 3.9431 1.5658 9.1624 24 1 4.5025 3.9166 9.3667 25 6 1.5353 2.7478 4.7599 26 1 -0.3634 0.4783 0.9095 27 1 -0.3634 0.5484 -0.8691 28 1 -0.3634 -1.0269 -0.0404 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9998 0.9445 -0.7426 32 1 3.9193 2.4856 0.1444 33 1 4.9130 0.7547 1.4566 34 1 0.7319 1.6726 -1.7312 35 1 2.4283 2.1825 -2.0163 36 1 0.5293 4.0577 -1.4673 37 1 2.1577 4.1995 -0.7246 38 1 0.7414 4.1759 1.2265 39 1 -0.3964 3.0077 0.4875 40 1 -0.3872 3.6834 2.1270 41 1 -1.3373 5.1738 3.8338 42 1 -0.4735 5.1395 6.1303 43 1 4.5912 2.8977 6.4588 44 1 2.3341 2.0683 5.0179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189287714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:59 Heat of formation + Delta-G solvation = -47.765972 kcal Electronic energy + Delta-G solvation = -26123.504951 eV Core-core repulsion = 22620.051562 eV Total energy + Delta-G solvation = -3503.453389 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32458 -37.77064 -36.42463 -35.84608 -33.75854 -32.91881 -31.35098 -29.80965 -29.32663 -28.95852 -25.48284 -24.93011 -23.56121 -22.60752 -21.77716 -20.77581 -19.83188 -18.09893 -17.33498 -16.90026 -16.02090 -15.58854 -15.26726 -14.98727 -14.69212 -14.43820 -13.91999 -13.77799 -13.40665 -13.21546 -12.83636 -12.81949 -12.59190 -12.29709 -12.22849 -11.87440 -11.80131 -11.62041 -11.27124 -11.16474 -11.09379 -10.98380 -10.86422 -10.51178 -10.43487 -10.32417 -10.17515 -9.84667 -9.56425 -9.46660 -9.19344 -8.63923 -8.00246 -7.51056 -7.36679 -6.67044 -4.36354 2.38974 2.87720 3.12139 3.16970 3.18728 3.54240 3.97849 4.03065 4.40757 4.60776 4.71161 4.76486 4.99476 5.16457 5.31778 5.41261 5.47300 5.51780 5.61032 5.64864 5.66504 5.70955 5.79358 5.84168 5.97108 5.99484 6.12773 6.16684 6.21985 6.24757 6.38348 6.46176 6.63414 6.75640 6.99847 7.07923 7.15021 7.30725 7.48031 7.76626 7.90120 8.01481 8.07543 8.24820 8.31256 8.59959 8.89955 8.91860 9.23734 10.27436 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.004797 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.806427 B = 5836.030573 C = 6643.901063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.172 3.828 4 C 0.071 3.929 5 O -0.526 6.526 6 C -0.126 4.126 7 C -0.138 4.138 8 C 0.092 3.908 9 N -0.609 5.609 10 C 0.576 3.424 11 O -0.502 6.502 12 C -0.123 4.123 13 C -0.233 4.233 14 C -0.105 4.105 15 C -0.208 4.208 16 C 0.098 3.902 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.797 5.797 21 Si 0.911 3.089 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.087 4.087 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.361 0.639 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.280 0.720 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.513 -0.752 -14.704 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.086 3.914 4 C -0.008 4.008 5 O -0.328 6.328 6 C -0.163 4.163 7 C -0.176 4.176 8 C -0.031 4.031 9 N -0.346 5.346 10 C 0.367 3.633 11 O -0.375 6.375 12 C -0.127 4.127 13 C -0.252 4.252 14 C -0.124 4.124 15 C -0.228 4.228 16 C 0.096 3.904 17 C -0.494 4.494 18 H 0.097 0.903 19 C -0.145 4.145 20 N -0.423 5.423 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.107 4.107 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.206 0.794 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.561 -1.457 -14.381 14.538 hybrid contribution 0.981 0.183 0.556 1.143 sum -0.580 -1.274 -13.825 13.895 Atomic orbital electron populations 1.21741 0.95973 1.00855 1.01718 1.21778 0.95917 0.95642 1.03033 1.20900 0.91326 0.92703 0.86460 1.22495 0.94682 0.95704 0.87962 1.87081 1.26209 1.78878 1.40621 1.22724 1.02053 0.95876 0.95695 1.22869 1.01512 0.96438 0.96741 1.22787 0.94583 0.91646 0.94073 1.48347 1.51427 1.30245 1.04567 1.18453 0.79114 0.85469 0.80250 1.90731 1.40024 1.26822 1.79969 1.19550 0.99764 0.99193 0.94156 1.21234 1.02133 1.02666 0.99195 1.20474 0.99035 0.98919 0.93943 1.21173 1.03771 1.02406 0.95416 1.17615 0.90405 0.88953 0.93446 1.19576 0.95228 1.41454 0.93124 0.90327 1.25903 0.96844 0.92651 0.99130 1.69769 1.05079 1.34837 1.32611 0.86210 0.79207 0.78733 0.82239 1.18507 1.19734 1.20032 1.21623 1.00379 0.98388 0.90308 0.92416 0.93206 0.93306 0.92407 0.89252 0.94168 0.94231 0.79417 0.89833 0.90543 0.90202 0.90810 0.88432 0.91818 0.86856 0.89079 0.88788 0.90859 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.49 37.16 0.35 -1.63 16 2 C -0.13 -1.85 4.74 -26.73 -0.13 -1.97 16 3 C 0.17 2.49 0.50 -130.82 -0.07 2.42 16 4 C 0.07 1.03 5.96 37.16 0.22 1.25 16 5 O -0.53 -9.36 9.36 -59.58 -0.56 -9.92 16 6 C -0.13 -1.32 5.84 -24.87 -0.15 -1.46 16 7 C -0.14 -1.46 7.08 -24.58 -0.17 -1.63 16 8 C 0.09 1.30 5.01 -2.53 -0.01 1.29 16 9 N -0.61 -10.64 1.90 -156.86 -0.30 -10.94 16 10 C 0.58 13.00 7.04 -12.31 -0.09 12.91 16 11 O -0.50 -12.67 12.41 -19.02 -0.24 -12.90 16 12 C -0.12 -3.00 5.80 -105.04 -0.61 -3.61 16 13 C -0.23 -4.99 8.06 -38.92 -0.31 -5.30 16 14 C -0.11 -2.29 10.01 -39.73 -0.40 -2.68 16 15 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 16 C 0.10 2.66 5.54 -106.87 -0.59 2.07 16 17 C -0.46 -12.52 9.06 -37.73 -0.34 -12.86 16 18 H 0.08 2.03 7.86 -52.49 -0.41 1.61 16 19 C 0.07 1.86 5.27 -17.34 -0.09 1.77 16 20 N -0.80 -21.53 10.86 55.55 0.60 -20.93 16 21 Si 0.91 19.34 29.57 -169.99 -5.03 14.31 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.09 -2.37 8.18 -38.44 -0.31 -2.69 16 26 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 27 H 0.05 0.57 6.23 -51.93 -0.32 0.24 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.67 6.31 -51.93 -0.33 1.34 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.36 4.99 9.12 45.56 0.42 5.40 16 34 H 0.08 0.79 5.99 -51.93 -0.31 0.48 16 35 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 36 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.52 5.64 -51.93 -0.29 1.23 16 39 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 40 H 0.11 2.03 3.91 -52.49 -0.21 1.83 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 44 H 0.13 3.94 5.99 -52.49 -0.31 3.63 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -31.65 339.90 -8.94 -40.59 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.47 Total: 12.21 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -3.08 Total: -17.56 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.30 Total: -31.87 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.79 Total: -22.82 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.65 -8.94 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189287714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.172 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds