Wall clock time and date at job start Tue Mar 31 2020 09:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46712 * 2 1 4 4 C 1.53003 * 109.87335 * 175.34171 * 3 2 1 5 5 O 1.42906 * 109.46507 * 301.57358 * 4 3 2 6 6 C 1.54364 * 110.03052 * 296.40617 * 3 2 1 7 7 C 1.55158 * 102.92324 * 141.65099 * 6 3 2 8 8 C 1.54910 * 101.61414 * 324.54438 * 7 6 3 9 9 N 1.47025 * 109.88410 * 54.32074 * 3 2 1 10 10 C 1.34777 * 125.64360 * 61.52472 * 9 3 2 11 11 O 1.21544 * 120.00156 * 355.06551 * 10 9 3 12 12 C 1.47887 * 119.99784 * 175.06869 * 10 9 3 13 13 C 1.39923 * 120.02697 * 20.81797 * 12 10 9 14 14 C 1.38323 * 120.35941 * 179.97438 * 13 12 10 15 15 C 1.37753 * 120.41180 * 0.02562 * 14 13 12 16 16 C 1.40749 * 120.04008 * 359.97438 * 15 14 13 17 17 C 1.41438 * 120.17515 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00574 * 29.65147 * 17 16 15 19 19 C 1.39941 * 119.99831 * 209.64254 * 17 16 15 20 20 N 1.30828 * 120.00008 * 9.65136 * 19 17 16 21 21 Si 1.86797 * 119.99892 * 189.64422 * 19 17 16 22 22 H 1.48494 * 109.47394 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47146 * 120.00668 * 21 19 17 24 24 H 1.48507 * 109.47182 * 240.00264 * 21 19 17 25 25 C 1.38994 * 120.02228 * 200.55038 * 12 10 9 26 26 H 1.09000 * 109.47210 * 297.74001 * 1 2 3 27 27 H 1.09002 * 109.47501 * 57.74996 * 1 2 3 28 28 H 1.09007 * 109.47123 * 177.74822 * 1 2 3 29 29 H 1.08991 * 109.47058 * 240.00520 * 2 1 3 30 30 H 1.08994 * 109.47190 * 119.99523 * 2 1 3 31 31 H 1.08992 * 109.47276 * 61.57369 * 4 3 2 32 32 H 1.09000 * 109.46868 * 181.57626 * 4 3 2 33 33 H 0.96703 * 113.99217 * 180.02562 * 5 4 3 34 34 H 1.09003 * 110.70676 * 23.30473 * 6 3 2 35 35 H 1.08997 * 110.75834 * 260.01879 * 6 3 2 36 36 H 1.09008 * 111.00592 * 206.45269 * 7 6 3 37 37 H 1.08998 * 111.00626 * 82.63982 * 7 6 3 38 38 H 1.09003 * 110.36251 * 155.83014 * 8 7 6 39 39 H 1.09004 * 110.36395 * 278.15186 * 8 7 6 40 40 H 1.08001 * 119.81590 * 0.02562 * 13 12 10 41 41 H 1.08002 * 119.79715 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.97896 * 179.97438 * 15 14 13 43 43 H 0.96994 * 119.99975 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.20841 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5654 1.4550 0.1169 5 8 3.9566 0.7847 1.3168 6 6 1.6080 2.1560 -1.2990 7 6 1.2603 3.5868 -0.8098 8 6 0.6493 3.2999 0.5845 9 7 1.4463 2.1828 1.1231 10 6 1.6052 1.8891 2.4288 11 8 2.2136 0.8895 2.7573 12 6 1.0391 2.7831 3.4620 13 6 -0.0001 3.6611 3.1350 14 6 -0.5350 4.5000 4.0961 15 6 -0.0509 4.4812 5.3856 16 6 0.9941 3.6047 5.7332 17 6 1.4930 3.5827 7.0565 18 1 0.8424 3.8273 7.8831 19 6 2.8297 3.2438 7.2947 20 7 3.6646 3.1322 6.2937 21 14 3.4219 2.9511 9.0420 22 1 2.2907 3.1377 9.9858 23 1 3.9431 1.5658 9.1624 24 1 4.5025 3.9166 9.3667 25 6 1.5353 2.7478 4.7599 26 1 -0.3634 0.4783 0.9095 27 1 -0.3634 0.5484 -0.8691 28 1 -0.3634 -1.0269 -0.0404 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9998 0.9445 -0.7426 32 1 3.9193 2.4856 0.1444 33 1 4.9130 0.7547 1.4566 34 1 0.7319 1.6726 -1.7312 35 1 2.4283 2.1825 -2.0163 36 1 0.5293 4.0577 -1.4673 37 1 2.1577 4.1995 -0.7246 38 1 0.7414 4.1759 1.2265 39 1 -0.3964 3.0077 0.4875 40 1 -0.3872 3.6834 2.1270 41 1 -1.3373 5.1738 3.8338 42 1 -0.4735 5.1395 6.1303 43 1 4.5912 2.8977 6.4588 44 1 2.3341 2.0683 5.0179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189287714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:58 Heat of formation + Delta-G solvation = -67.158535 kcal Electronic energy + Delta-G solvation = -26124.345876 eV Core-core repulsion = 22620.051562 eV Total energy + Delta-G solvation = -3504.294314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65441 -39.45224 -38.14506 -37.12527 -35.60432 -34.22161 -32.65867 -31.50453 -31.17737 -30.16315 -27.29172 -26.20867 -24.93998 -23.90378 -23.11874 -22.48554 -21.31544 -19.73171 -18.88798 -18.23182 -17.34004 -17.25559 -16.91204 -16.51673 -16.28353 -15.63266 -15.41655 -15.14553 -14.83316 -14.62825 -14.51015 -14.28250 -14.03682 -13.77632 -13.52731 -13.31638 -13.08982 -12.92792 -12.81973 -12.79255 -12.60774 -12.23586 -12.21186 -12.05367 -11.78745 -11.71584 -11.54380 -11.33486 -11.23376 -11.06475 -10.74260 -10.35330 -9.50709 -9.35130 -9.24497 -8.59568 -6.39794 0.51958 1.02314 1.34679 1.45494 1.50672 2.15067 2.19047 2.30108 2.83788 3.37009 3.61089 3.67930 3.73185 4.00548 4.09061 4.19562 4.26641 4.34274 4.43658 4.46722 4.51053 4.59614 4.65444 4.69029 4.72382 4.89513 4.90393 5.00633 5.04993 5.10773 5.14492 5.16366 5.22842 5.27406 5.33572 5.41701 5.47978 5.55584 5.78264 5.88938 5.99903 6.08087 6.32065 6.58333 6.79867 6.90762 6.96320 6.97398 7.58299 8.36782 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.004797 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.806427 B = 5836.030573 C = 6643.901063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.158 3.842 4 C 0.064 3.936 5 O -0.562 6.562 6 C -0.113 4.113 7 C -0.124 4.124 8 C 0.076 3.924 9 N -0.603 5.603 10 C 0.567 3.433 11 O -0.544 6.544 12 C -0.137 4.137 13 C -0.213 4.213 14 C -0.102 4.102 15 C -0.215 4.215 16 C 0.065 3.935 17 C -0.502 4.502 18 H 0.080 0.920 19 C 0.026 3.974 20 N -0.837 5.837 21 Si 0.985 3.015 22 H -0.253 1.253 23 H -0.272 1.272 24 H -0.263 1.263 25 C -0.124 4.124 26 H 0.024 0.976 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.371 0.629 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.139 0.861 42 H 0.107 0.893 43 H 0.283 0.717 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 0.545 -18.028 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.073 3.927 4 C -0.015 4.015 5 O -0.366 6.366 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.045 4.045 9 N -0.337 5.337 10 C 0.358 3.642 11 O -0.421 6.421 12 C -0.140 4.140 13 C -0.232 4.232 14 C -0.120 4.120 15 C -0.235 4.235 16 C 0.063 3.937 17 C -0.532 4.532 18 H 0.098 0.902 19 C -0.187 4.187 20 N -0.464 5.464 21 Si 0.806 3.194 22 H -0.176 1.176 23 H -0.197 1.197 24 H -0.188 1.188 25 C -0.144 4.144 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.217 0.783 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.174 0.826 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.214 -0.125 -17.762 18.051 hybrid contribution 1.394 -0.200 1.383 1.974 sum -1.820 -0.325 -16.379 16.483 Atomic orbital electron populations 1.21702 0.95008 1.01523 1.01472 1.21713 0.96724 0.95732 1.01935 1.21371 0.91168 0.92818 0.87319 1.22743 0.95150 0.95663 0.87953 1.87073 1.27369 1.79472 1.42704 1.22772 1.03826 0.94969 0.93511 1.22854 1.02156 0.96732 0.94483 1.23053 0.95558 0.89833 0.96104 1.48276 1.50809 1.31071 1.03565 1.18283 0.79097 0.84860 0.81995 1.90706 1.41872 1.28385 1.81185 1.19945 1.00333 0.99944 0.93806 1.21785 0.99949 1.00303 1.01162 1.20974 0.99427 0.98998 0.92598 1.21467 1.02885 1.01896 0.97210 1.17962 0.91893 0.89997 0.93861 1.19850 0.96201 1.43661 0.93487 0.90174 1.26823 0.96598 0.91810 1.03489 1.69891 1.05400 1.36209 1.34911 0.85110 0.78929 0.78566 0.76783 1.17581 1.19698 1.18771 1.21374 1.01242 0.99418 0.92405 0.95652 0.89843 0.92696 0.89535 0.94267 0.90752 0.94576 0.78287 0.87808 0.87801 0.86446 0.91051 0.89990 0.89885 0.82627 0.84370 0.87498 0.90698 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.49 71.98 0.68 -2.83 16 2 C -0.12 -3.45 4.74 30.60 0.14 -3.31 16 3 C 0.16 4.24 0.50 3.97 0.00 4.24 16 4 C 0.06 1.78 5.96 71.98 0.43 2.21 16 5 O -0.56 -21.03 9.36 -125.70 -1.18 -22.21 16 6 C -0.11 -1.78 5.84 31.80 0.19 -1.59 16 7 C -0.12 -2.00 7.08 31.99 0.23 -1.77 16 8 C 0.08 1.90 5.01 86.86 0.44 2.34 16 9 N -0.60 -20.52 1.90 -768.48 -1.46 -21.98 16 10 C 0.57 26.63 7.04 86.80 0.61 27.24 16 11 O -0.54 -29.52 12.41 19.42 0.24 -29.28 16 12 C -0.14 -6.90 5.80 -20.13 -0.12 -7.01 16 13 C -0.21 -8.85 8.06 22.70 0.18 -8.67 16 14 C -0.10 -4.22 10.01 22.18 0.22 -4.00 16 15 C -0.21 -10.50 9.78 22.77 0.22 -10.27 16 16 C 0.06 3.70 5.54 -21.32 -0.12 3.58 16 17 C -0.50 -28.62 9.06 23.47 0.21 -28.41 16 18 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 19 C 0.03 1.40 5.27 85.25 0.45 1.84 16 20 N -0.84 -48.52 10.86 21.83 0.24 -48.28 16 21 Si 0.99 41.51 29.57 68.60 2.03 43.54 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 C -0.12 -7.25 8.18 23.01 0.19 -7.06 16 26 H 0.02 0.78 7.46 -2.39 -0.02 0.76 16 27 H 0.08 1.51 6.23 -2.39 -0.01 1.49 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.51 6.31 -2.39 -0.02 1.50 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.37 11.07 9.12 -74.06 -0.68 10.40 16 34 H 0.10 1.27 5.99 -2.39 -0.01 1.26 16 35 H 0.10 1.17 7.83 -2.39 -0.02 1.15 16 36 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 2.32 5.64 -2.39 -0.01 2.30 16 39 H 0.08 1.80 7.53 -2.38 -0.02 1.78 16 40 H 0.16 5.08 3.91 -2.91 -0.01 5.06 16 41 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.28 15.07 8.30 -92.71 -0.77 14.30 16 44 H 0.09 6.11 5.99 -2.91 -0.02 6.10 16 Total: -1.00 -78.05 339.90 4.18 -73.87 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.35 Total: 37.81 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.96 Total: -33.47 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.23 Total: -70.26 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.93 Total: -51.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -78.05 4.18 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189287714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.716 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds