Wall clock time and date at job start Tue Mar 31 2020 10:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33020 * 120.00123 * 2 1 4 4 C 1.50695 * 119.99912 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47553 * 94.99819 * 4 3 2 6 6 C 1.47057 * 119.99905 * 180.02562 * 3 2 1 7 7 O 1.21635 * 119.99915 * 0.02562 * 6 3 2 8 8 N 1.34777 * 120.00093 * 180.02562 * 6 3 2 9 9 C 1.39830 * 120.00147 * 184.62849 * 8 6 3 10 10 C 1.38955 * 120.04301 * 144.87303 * 9 8 6 11 11 C 1.38116 * 120.03138 * 180.02562 * 10 9 8 12 12 C 1.38218 * 120.13079 * 359.72700 * 11 10 9 13 13 C 1.38766 * 120.08537 * 0.55235 * 12 11 10 14 14 O 1.35902 * 120.01213 * 179.72359 * 13 12 11 15 15 C 1.42889 * 117.00498 * 359.72489 * 14 13 12 16 16 C 1.53003 * 109.47415 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47319 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46850 * 60.00248 * 21 19 17 23 23 H 1.48499 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47077 * 300.00225 * 21 19 17 25 25 C 1.38612 * 119.96402 * 359.44343 * 13 12 11 26 26 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46846 * 299.99700 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99186 * 1 2 3 29 29 H 1.07997 * 119.99683 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47026 * 214.99808 * 4 3 2 31 31 H 1.09000 * 109.47574 * 334.99496 * 4 3 2 32 32 H 1.08997 * 109.47198 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46946 * 300.00038 * 5 4 3 34 34 H 1.09000 * 109.46944 * 59.99292 * 5 4 3 35 35 H 0.96999 * 119.99868 * 4.63143 * 8 6 3 36 36 H 1.07994 * 119.98081 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.92830 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.95157 * 180.29705 * 12 11 10 39 39 H 1.09008 * 109.47475 * 300.00087 * 15 14 13 40 40 H 1.09005 * 109.47553 * 60.00129 * 15 14 13 41 41 H 1.08998 * 109.46913 * 299.99607 * 16 15 14 42 42 H 1.08995 * 109.47184 * 59.99928 * 16 15 14 43 43 H 0.97005 * 120.00120 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.06300 * 180.24956 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 1.4187 2.4570 0.0006 5 6 1.2730 2.9613 1.4377 6 6 3.6427 1.1519 -0.0006 7 8 4.2508 0.0985 -0.0015 8 7 4.3167 2.3191 0.0000 9 6 5.7115 2.3211 -0.0983 10 6 6.3583 3.3334 -0.7967 11 6 7.7360 3.3349 -0.8940 12 6 8.4751 2.3335 -0.2929 13 6 7.8342 1.3168 0.4009 14 8 8.5621 0.3298 0.9866 15 6 9.9821 0.3984 0.8430 16 6 10.6255 -0.7885 1.5628 17 6 12.1230 -0.7165 1.4108 18 1 12.5712 0.0949 0.8566 19 6 12.9212 -1.6859 1.9801 20 7 12.3755 -2.6738 2.6554 21 14 14.7775 -1.5971 1.7911 22 1 15.2752 -0.3294 2.3832 23 1 15.4019 -2.7490 2.4899 24 1 15.1310 -1.6424 0.3495 25 6 6.4517 1.3117 0.5010 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.0470 -0.9353 -0.0004 30 1 1.9659 3.1928 -0.5889 31 1 0.4303 2.3062 -0.4334 32 1 0.7284 3.9055 1.4380 33 1 0.7258 2.2256 2.0272 34 1 2.2614 3.1121 1.8718 35 1 3.8341 3.1577 0.0685 36 1 5.7833 4.1190 -1.2642 37 1 8.2370 4.1228 -1.4368 38 1 9.5526 2.3401 -0.3668 39 1 10.2423 0.3657 -0.2151 40 1 10.3468 1.3289 1.2782 41 1 10.3654 -0.7562 2.6208 42 1 10.2608 -1.7187 1.1272 43 1 12.9370 -3.3560 3.0557 44 1 5.9515 0.5234 1.0440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190387928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:27 Heat of formation + Delta-G solvation = -50.177074 kcal Electronic energy + Delta-G solvation = -23565.653421 eV Core-core repulsion = 20062.095479 eV Total energy + Delta-G solvation = -3503.557942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74941 -39.33770 -37.33822 -36.37050 -34.62800 -33.31702 -31.73115 -30.83968 -29.76199 -29.05300 -27.83978 -25.02617 -23.69576 -23.48152 -22.21380 -21.59795 -20.29047 -19.02973 -18.11485 -17.31845 -16.41980 -16.13392 -15.58867 -15.58051 -15.25097 -15.10223 -14.86321 -14.47678 -14.27344 -13.99804 -13.56090 -13.41966 -12.98188 -12.92198 -12.67375 -12.64039 -12.51473 -12.28660 -11.77591 -11.65917 -11.49516 -11.38867 -11.27812 -10.88197 -10.82467 -10.53420 -10.26846 -9.83319 -9.77940 -9.60974 -9.42720 -9.26889 -8.41588 -8.21473 -7.77971 -6.06299 -4.11072 0.96091 1.54907 1.68436 2.88855 3.03751 3.31236 3.35379 3.37309 3.88427 4.01566 4.36070 4.36859 4.45781 4.63921 4.80133 4.89140 5.02464 5.06744 5.16890 5.22488 5.22926 5.29751 5.40084 5.41270 5.46338 5.51004 5.58662 5.72378 5.78479 5.94957 6.05830 6.08589 6.09220 6.13980 6.36201 6.42959 6.56952 6.64360 6.79649 7.02861 7.28465 7.55640 7.69485 7.85603 8.00502 8.12335 8.28094 8.94375 9.52844 11.05279 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002461 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.688066 B =11375.975568 C =12246.693495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.090 4.090 5 C -0.152 4.152 6 C 0.551 3.449 7 O -0.515 6.515 8 N -0.668 5.668 9 C 0.175 3.825 10 C -0.196 4.196 11 C -0.062 4.062 12 C -0.226 4.226 13 C 0.163 3.837 14 O -0.312 6.312 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.163 4.163 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.081 14.148 -6.459 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 C -0.194 4.194 4 C -0.127 4.127 5 C -0.209 4.209 6 C 0.340 3.660 7 O -0.391 6.391 8 N -0.313 5.313 9 C 0.081 3.919 10 C -0.217 4.217 11 C -0.081 4.081 12 C -0.245 4.245 13 C 0.115 3.885 14 O -0.225 6.225 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.183 4.183 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.147 0.853 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.709 13.032 -6.241 28.624 hybrid contribution 1.053 0.557 -0.183 1.205 sum -23.656 13.588 -6.424 28.027 Atomic orbital electron populations 1.21023 0.91948 1.03275 1.02658 1.23665 0.96397 0.98013 0.90227 1.21320 0.91951 0.96769 1.09386 1.20590 1.00398 0.93657 0.98056 1.21779 1.02347 1.01135 0.95656 1.18533 0.87940 0.83441 0.76058 1.90869 1.69546 1.30991 1.47644 1.43350 1.05124 1.09688 1.73135 1.17306 0.81826 0.96208 0.96566 1.20625 0.94933 1.01257 1.04839 1.20650 0.92912 0.97312 0.97223 1.21391 1.01007 0.97285 1.04812 1.18984 0.91073 0.87644 0.90814 1.86192 1.21884 1.44451 1.69964 1.23346 0.74717 1.02234 1.00615 1.19124 0.94361 0.91508 0.96232 1.20934 0.90560 1.10232 1.34732 0.92406 1.24995 0.99097 0.95171 0.94958 1.69972 1.35663 1.12670 1.34450 0.86544 0.84823 0.77607 0.78361 1.20103 1.21133 1.20099 1.20428 0.90950 1.01966 1.04987 0.91204 0.90574 0.90544 0.85289 0.91212 0.90111 0.91995 0.92234 0.92447 0.75402 0.86169 0.85712 0.85054 0.93069 0.93065 0.95389 0.95347 0.92660 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 8.84 36.01 0.32 -0.34 16 2 C -0.06 -0.53 9.84 -36.12 -0.36 -0.88 16 3 C -0.19 -1.71 5.25 -102.86 -0.54 -2.25 16 4 C -0.09 -0.50 5.12 -27.89 -0.14 -0.64 16 5 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 6 C 0.55 7.09 7.59 -12.68 -0.10 6.99 16 7 O -0.51 -8.96 13.65 5.25 0.07 -8.88 16 8 N -0.67 -7.56 5.26 -10.96 -0.06 -7.62 16 9 C 0.17 2.51 6.30 -83.74 -0.53 1.99 16 10 C -0.20 -2.44 9.96 -39.36 -0.39 -2.83 16 11 C -0.06 -0.82 10.03 -39.63 -0.40 -1.22 16 12 C -0.23 -3.69 9.04 -39.39 -0.36 -4.04 16 13 C 0.16 3.12 6.68 -39.25 -0.26 2.85 16 14 O -0.31 -6.97 10.13 -19.43 -0.20 -7.17 16 15 C 0.06 1.46 4.68 37.16 0.17 1.63 16 16 C 0.02 0.68 5.34 -27.88 -0.15 0.53 16 17 C -0.53 -15.01 9.11 -34.44 -0.31 -15.33 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 21 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.16 -2.92 8.63 -39.24 -0.34 -3.26 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.32 7.82 -51.93 -0.41 -0.09 16 28 H 0.08 0.30 7.42 -51.93 -0.39 -0.08 16 29 H 0.13 1.28 7.49 -52.49 -0.39 0.89 16 30 H 0.07 0.33 7.04 -51.93 -0.37 -0.04 16 31 H 0.08 0.34 6.32 -51.93 -0.33 0.02 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 7.86 -51.93 -0.41 -0.09 16 34 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.41 3.14 7.07 -40.82 -0.29 2.85 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 2.08 6.29 -52.48 -0.33 1.75 16 39 H 0.05 1.09 7.67 -51.92 -0.40 0.69 16 40 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.14 2.82 6.22 -52.49 -0.33 2.49 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -34.06 366.65 -8.58 -42.63 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.53 Total: 0.82 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.11 Total: -15.60 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.68 Total: -33.94 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.13 Total: -16.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.06 -8.58 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190387928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.544 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds