Wall clock time and date at job start Tue Mar 31 2020 10:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33020 * 120.00123 * 2 1 4 4 C 1.50695 * 119.99912 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.47553 * 94.99819 * 4 3 2 6 6 C 1.47057 * 119.99905 * 180.02562 * 3 2 1 7 7 O 1.21635 * 119.99915 * 0.02562 * 6 3 2 8 8 N 1.34777 * 120.00093 * 180.02562 * 6 3 2 9 9 C 1.39830 * 120.00147 * 184.62849 * 8 6 3 10 10 C 1.38955 * 120.04301 * 144.87303 * 9 8 6 11 11 C 1.38116 * 120.03138 * 180.02562 * 10 9 8 12 12 C 1.38218 * 120.13079 * 359.72700 * 11 10 9 13 13 C 1.38766 * 120.08537 * 0.55235 * 12 11 10 14 14 O 1.35902 * 120.01213 * 179.72359 * 13 12 11 15 15 C 1.42889 * 117.00498 * 359.72489 * 14 13 12 16 16 C 1.53003 * 109.47415 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47319 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99986 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46850 * 60.00248 * 21 19 17 23 23 H 1.48499 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47077 * 300.00225 * 21 19 17 25 25 C 1.38612 * 119.96402 * 359.44343 * 13 12 11 26 26 H 1.08993 * 109.47579 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46846 * 299.99700 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99186 * 1 2 3 29 29 H 1.07997 * 119.99683 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47026 * 214.99808 * 4 3 2 31 31 H 1.09000 * 109.47574 * 334.99496 * 4 3 2 32 32 H 1.08997 * 109.47198 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46946 * 300.00038 * 5 4 3 34 34 H 1.09000 * 109.46944 * 59.99292 * 5 4 3 35 35 H 0.96999 * 119.99868 * 4.63143 * 8 6 3 36 36 H 1.07994 * 119.98081 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.92830 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.95157 * 180.29705 * 12 11 10 39 39 H 1.09008 * 109.47475 * 300.00087 * 15 14 13 40 40 H 1.09005 * 109.47553 * 60.00129 * 15 14 13 41 41 H 1.08998 * 109.46913 * 299.99607 * 16 15 14 42 42 H 1.08995 * 109.47184 * 59.99928 * 16 15 14 43 43 H 0.97005 * 120.00120 * 179.97438 * 20 19 17 44 44 H 1.07999 * 120.06300 * 180.24956 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 1.4187 2.4570 0.0006 5 6 1.2730 2.9613 1.4377 6 6 3.6427 1.1519 -0.0006 7 8 4.2508 0.0985 -0.0015 8 7 4.3167 2.3191 0.0000 9 6 5.7115 2.3211 -0.0983 10 6 6.3583 3.3334 -0.7967 11 6 7.7360 3.3349 -0.8940 12 6 8.4751 2.3335 -0.2929 13 6 7.8342 1.3168 0.4009 14 8 8.5621 0.3298 0.9866 15 6 9.9821 0.3984 0.8430 16 6 10.6255 -0.7885 1.5628 17 6 12.1230 -0.7165 1.4108 18 1 12.5712 0.0949 0.8566 19 6 12.9212 -1.6859 1.9801 20 7 12.3755 -2.6738 2.6554 21 14 14.7775 -1.5971 1.7911 22 1 15.2752 -0.3294 2.3832 23 1 15.4019 -2.7490 2.4899 24 1 15.1310 -1.6424 0.3495 25 6 6.4517 1.3117 0.5010 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.0470 -0.9353 -0.0004 30 1 1.9659 3.1928 -0.5889 31 1 0.4303 2.3062 -0.4334 32 1 0.7284 3.9055 1.4380 33 1 0.7258 2.2256 2.0272 34 1 2.2614 3.1121 1.8718 35 1 3.8341 3.1577 0.0685 36 1 5.7833 4.1190 -1.2642 37 1 8.2370 4.1228 -1.4368 38 1 9.5526 2.3401 -0.3668 39 1 10.2423 0.3657 -0.2151 40 1 10.3468 1.3289 1.2782 41 1 10.3654 -0.7562 2.6208 42 1 10.2608 -1.7187 1.1272 43 1 12.9370 -3.3560 3.0557 44 1 5.9515 0.5234 1.0440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190387928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:26 Heat of formation + Delta-G solvation = -71.378165 kcal Electronic energy + Delta-G solvation = -23566.572770 eV Core-core repulsion = 20062.095479 eV Total energy + Delta-G solvation = -3504.477291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83952 -40.68082 -38.62023 -37.13703 -35.83409 -35.38257 -32.62380 -32.23877 -31.11385 -30.37071 -28.52878 -27.01885 -24.69344 -24.12216 -23.57994 -23.07529 -21.73509 -20.07385 -19.31922 -18.40632 -18.07597 -17.35721 -17.01990 -16.87068 -16.81767 -16.46090 -16.21670 -15.65488 -15.07200 -14.72910 -14.50076 -14.41923 -14.34226 -14.29289 -13.96419 -13.46088 -13.38426 -13.25129 -13.14766 -12.93577 -12.74671 -12.65461 -12.61144 -12.29688 -11.91634 -11.83137 -11.76220 -11.61664 -11.45371 -11.25535 -10.88632 -10.63582 -10.09121 -9.46074 -9.04887 -8.27906 -6.42706 0.02695 0.44823 0.51513 1.39519 1.44621 1.52545 1.90273 2.10130 2.29483 2.52131 2.80064 3.06078 3.61376 3.82142 3.89369 4.13222 4.18110 4.19330 4.23032 4.24157 4.30520 4.42068 4.48420 4.54378 4.60741 4.68892 4.74265 4.75050 4.83569 5.03733 5.07148 5.19672 5.23333 5.25619 5.30359 5.36051 5.39219 5.42356 5.47072 5.48876 5.61656 5.66238 5.88562 6.04526 6.36686 6.53655 6.71999 7.05477 7.27593 8.85451 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002461 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.688066 B =11375.975568 C =12246.693495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 C -0.199 4.199 4 C -0.083 4.083 5 C -0.152 4.152 6 C 0.541 3.459 7 O -0.573 6.573 8 N -0.652 5.652 9 C 0.174 3.826 10 C -0.173 4.173 11 C -0.052 4.052 12 C -0.233 4.233 13 C 0.123 3.877 14 O -0.347 6.347 15 C 0.084 3.916 16 C 0.027 3.973 17 C -0.546 4.546 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.263 1.263 25 C -0.188 4.188 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.430 0.570 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.135 0.865 39 H 0.062 0.938 40 H 0.066 0.934 41 H -0.004 1.004 42 H -0.007 1.007 43 H 0.267 0.733 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.035 17.994 -8.426 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.120 4.120 5 C -0.209 4.209 6 C 0.334 3.666 7 O -0.453 6.453 8 N -0.298 5.298 9 C 0.079 3.921 10 C -0.193 4.193 11 C -0.070 4.070 12 C -0.252 4.252 13 C 0.077 3.923 14 O -0.261 6.261 15 C 0.010 3.990 16 C -0.010 4.010 17 C -0.584 4.584 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.187 1.187 25 C -0.209 4.209 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.271 0.729 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.076 0.924 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.711 16.944 -8.217 31.870 hybrid contribution 1.173 -0.629 0.412 1.394 sum -24.538 16.315 -7.805 30.483 Atomic orbital electron populations 1.21079 0.88844 1.04244 1.04122 1.23875 0.98527 0.96822 0.88988 1.21403 0.89543 0.98887 1.10413 1.20653 1.01052 0.91678 0.98611 1.21794 1.01823 1.02043 0.95253 1.19337 0.89699 0.82869 0.74728 1.90854 1.71004 1.33069 1.50349 1.43266 1.04000 1.10398 1.72160 1.17492 0.83069 0.95618 0.95950 1.21151 0.95044 1.00732 1.02384 1.21161 0.93242 0.96806 0.95772 1.21551 1.01465 0.97352 1.04835 1.19276 0.91321 0.88541 0.93208 1.86097 1.21552 1.46791 1.71683 1.22909 0.75332 1.00327 1.00401 1.18979 0.95140 0.92264 0.94630 1.21365 0.91055 1.10930 1.35019 0.90751 1.26127 1.05221 0.94453 0.94189 1.70137 1.38014 1.13651 1.35479 0.85272 0.77308 0.78120 0.78963 1.18549 1.20800 1.18716 1.20378 0.90956 1.02941 1.06643 0.90702 0.89095 0.88570 0.88144 0.89825 0.87935 0.89973 0.92578 0.93814 0.72939 0.81302 0.81363 0.84762 0.92016 0.91586 0.98547 0.98830 0.92419 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 8.84 71.24 0.63 -0.38 16 2 C -0.06 -1.04 9.84 24.52 0.24 -0.80 16 3 C -0.20 -3.45 5.25 -18.72 -0.10 -3.55 16 4 C -0.08 -0.68 5.12 29.85 0.15 -0.53 16 5 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 6 C 0.54 14.39 7.59 86.56 0.66 15.04 16 7 O -0.57 -21.78 13.65 -4.14 -0.06 -21.83 16 8 N -0.65 -14.14 5.26 -306.82 -1.61 -15.76 16 9 C 0.17 4.87 6.30 38.17 0.24 5.11 16 10 C -0.17 -3.65 9.96 22.41 0.22 -3.43 16 11 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 12 C -0.23 -7.44 9.04 22.39 0.20 -7.24 16 13 C 0.12 4.94 6.68 22.49 0.15 5.09 16 14 O -0.35 -16.77 10.13 -92.45 -0.94 -17.70 16 15 C 0.08 3.99 4.68 71.98 0.34 4.32 16 16 C 0.03 1.58 5.34 29.85 0.16 1.74 16 17 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 18 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 20 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16 21 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 C -0.19 -7.20 8.63 22.49 0.19 -7.01 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.51 7.82 -2.38 -0.02 0.49 16 28 H 0.10 0.44 7.42 -2.39 -0.02 0.43 16 29 H 0.10 2.23 7.49 -2.91 -0.02 2.21 16 30 H 0.08 0.47 7.04 -2.38 -0.02 0.45 16 31 H 0.10 0.45 6.32 -2.39 -0.02 0.44 16 32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.49 7.86 -2.38 -0.02 0.47 16 34 H 0.04 0.46 8.12 -2.39 -0.02 0.44 16 35 H 0.43 5.45 7.07 -92.71 -0.66 4.80 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.13 4.13 6.29 -2.91 -0.02 4.11 16 39 H 0.06 2.72 7.67 -2.38 -0.02 2.71 16 40 H 0.07 2.86 7.65 -2.38 -0.02 2.84 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 44 H 0.11 4.91 6.22 -2.91 -0.02 4.89 16 Total: -1.00 -81.81 366.65 4.77 -77.04 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.35 Total: 14.73 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 4.72 Total: -24.41 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.33 Total: -74.42 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.99 Total: -39.53 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -81.81 4.77 -77.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190387928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.664 kcal (2) G-P(sol) polarization free energy of solvation -81.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds