Wall clock time and date at job start Tue Mar 31 2020 10:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47116 * 59.99779 * 3 2 1 5 5 C 1.53007 * 109.47039 * 299.99944 * 3 2 1 6 6 N 1.46503 * 109.47024 * 180.02562 * 3 2 1 7 7 C 1.34774 * 119.99682 * 180.02562 * 6 3 2 8 8 O 1.21727 * 120.00011 * 359.97438 * 7 6 3 9 9 C 1.46252 * 120.00082 * 180.02562 * 7 6 3 10 10 C 1.35023 * 120.00058 * 186.63870 * 9 7 6 11 11 C 1.46963 * 120.00405 * 13.80289 * 10 9 7 12 12 C 1.40022 * 120.09443 * 39.76301 * 11 10 9 13 13 C 1.37598 * 119.89450 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.10514 * 0.25281 * 13 12 11 15 15 O 1.35569 * 119.90184 * 179.72182 * 14 13 12 16 16 C 1.34777 * 117.00196 * 353.54601 * 15 14 13 17 17 H 1.07999 * 119.99722 * 5.12258 * 16 15 14 18 18 C 1.38716 * 120.00268 * 185.12354 * 16 15 14 19 19 N 1.31503 * 119.99888 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46945 * 120.00532 * 20 18 16 23 23 H 1.48505 * 109.47047 * 240.00292 * 20 18 16 24 24 C 1.39186 * 120.19957 * 359.49189 * 14 13 12 25 25 C 1.37597 * 120.09940 * 0.50767 * 24 14 13 26 26 H 1.08996 * 109.47412 * 60.00544 * 1 2 3 27 27 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47424 * 299.99688 * 1 2 3 29 29 H 1.09004 * 109.47103 * 239.99939 * 2 1 3 30 30 H 1.09002 * 109.47569 * 120.00161 * 2 1 3 31 31 H 1.08996 * 109.47109 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.46801 * 300.00276 * 4 3 2 33 33 H 1.09002 * 109.46590 * 60.00472 * 4 3 2 34 34 H 1.08997 * 109.46805 * 300.00093 * 5 3 2 35 35 H 1.09004 * 109.46814 * 59.99908 * 5 3 2 36 36 H 1.08996 * 109.47104 * 179.97438 * 5 3 2 37 37 H 0.96995 * 120.00279 * 359.97438 * 6 3 2 38 38 H 1.07997 * 120.00094 * 6.62813 * 9 7 6 39 39 H 1.08002 * 119.99945 * 193.81386 * 10 9 7 40 40 H 1.08001 * 120.05452 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.94895 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00134 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.94953 * 180.25861 * 24 14 13 44 44 H 1.08001 * 120.05145 * 179.76551 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5050 1.4424 -0.0006 7 6 4.1788 2.6096 -0.0002 8 8 3.5702 3.6638 0.0002 9 6 5.6414 2.6097 -0.0014 10 6 6.3165 3.7711 0.1342 11 6 5.6140 4.9816 0.5824 12 6 4.6442 4.8985 1.5890 13 6 3.9886 6.0344 2.0051 14 6 4.2842 7.2637 1.4235 15 8 3.6316 8.3793 1.8327 16 6 2.6194 8.2104 2.7064 17 1 2.4141 7.2308 3.1121 18 6 1.8412 9.2947 3.0844 19 7 2.0908 10.4874 2.5900 20 14 0.4378 9.0603 4.2947 21 1 0.3659 7.6333 4.6991 22 1 0.6730 9.9031 5.4946 23 1 -0.8409 9.4585 3.6531 24 6 5.2511 7.3519 0.4263 25 6 5.9119 6.2214 0.0038 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8929 3.1915 1.2490 32 1 0.4400 2.1637 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8933 1.6499 -2.1392 35 1 0.4399 2.1637 -1.2493 36 1 1.8929 3.1915 -1.2491 37 1 3.9900 0.6024 -0.0006 38 1 6.1813 1.6808 -0.1105 39 1 7.3730 3.8106 -0.0869 40 1 4.4106 3.9442 2.0375 41 1 3.2401 5.9712 2.7812 42 1 1.5464 11.2456 2.8541 43 1 5.4803 8.3086 -0.0194 44 1 6.6594 6.2902 -0.7727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229919379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:49 Heat of formation + Delta-G solvation = -17.627306 kcal Electronic energy + Delta-G solvation = -24942.368304 eV Core-core repulsion = 21440.221826 eV Total energy + Delta-G solvation = -3502.146478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.12314 -38.83702 -37.33924 -36.10607 -33.02743 -32.73185 -32.06126 -30.06028 -29.66318 -27.92968 -27.20012 -25.39001 -24.76904 -23.06386 -21.72967 -20.94583 -19.30158 -18.96689 -17.95966 -17.31760 -16.50528 -16.03478 -14.93596 -14.79344 -14.69623 -14.45834 -14.22929 -13.79830 -13.65375 -13.60796 -13.33621 -13.06401 -12.85219 -12.57872 -12.39024 -12.20315 -12.14499 -11.82016 -11.66781 -11.59410 -11.29508 -11.22541 -10.97559 -10.87066 -10.75937 -10.65617 -10.54033 -10.40064 -9.36617 -9.22206 -9.11645 -8.85869 -8.65239 -7.86240 -6.83280 -6.44657 -3.99669 1.26748 2.44895 2.76431 3.14581 3.16168 3.21135 3.39047 3.72386 3.98529 4.59336 4.73025 4.76597 4.98338 5.11172 5.14170 5.26821 5.28163 5.30342 5.35683 5.43245 5.65180 5.70986 5.77211 5.78642 5.81043 5.83939 5.87852 5.96111 6.02924 6.04844 6.27436 6.33869 6.48029 6.49286 6.53616 6.67926 6.77951 6.81527 7.06377 7.15714 7.36127 7.51609 7.53273 7.81740 7.94607 8.02728 8.66738 9.01459 9.73077 10.73302 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.004417 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.516505 B = 6337.414831 C = 8107.162817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.176 3.824 4 C -0.167 4.167 5 C -0.165 4.165 6 N -0.731 5.731 7 C 0.542 3.458 8 O -0.508 6.508 9 C -0.273 4.273 10 C 0.027 3.973 11 C -0.191 4.191 12 C 0.021 3.979 13 C -0.246 4.246 14 C 0.173 3.827 15 O -0.173 6.173 16 C -0.387 4.387 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.860 5.860 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.211 4.211 25 C -0.044 4.044 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.392 0.608 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.270 0.730 43 H 0.115 0.885 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -20.601 -4.572 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.091 3.909 4 C -0.225 4.225 5 C -0.222 4.222 6 N -0.383 5.383 7 C 0.332 3.668 8 O -0.385 6.385 9 C -0.294 4.294 10 C 0.007 3.993 11 C -0.192 4.192 12 C 0.003 3.997 13 C -0.265 4.265 14 C 0.118 3.882 15 O -0.075 6.075 16 C -0.464 4.464 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.231 4.231 25 C -0.062 4.062 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.226 0.774 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.080 0.920 43 H 0.133 0.867 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.589 -19.332 -4.595 19.934 hybrid contribution -0.482 -0.791 0.524 1.064 sum 1.107 -20.123 -4.071 20.560 Atomic orbital electron populations 1.21856 0.94774 1.01679 1.02734 1.21756 0.97001 0.95363 1.02073 1.20229 0.79632 0.94896 0.96184 1.22292 1.00970 1.03235 0.95980 1.22270 1.00893 1.03063 0.96019 1.46146 1.06379 1.08541 1.77267 1.18417 0.88400 0.83509 0.76500 1.90925 1.69657 1.30089 1.47816 1.22605 0.93183 0.98711 1.14883 1.22306 0.97965 0.91733 0.87250 1.18293 1.04633 0.92177 1.04117 1.20578 0.90403 0.95874 0.92868 1.20949 1.06454 0.92601 1.06482 1.19535 0.90950 0.86701 0.91029 1.83896 1.41670 1.27369 1.54606 1.21441 1.07404 0.96771 1.20749 0.88868 1.25311 0.98462 0.94396 0.98372 1.70029 1.38572 0.99374 1.41492 0.85646 0.79757 0.78857 0.79201 1.19039 1.20115 1.20084 1.19996 1.02402 0.98689 1.01975 1.20647 0.97228 0.91187 0.97149 0.92067 0.92689 0.91972 0.91707 0.91633 0.89674 0.91961 0.93133 0.93255 0.92011 0.89903 0.77443 0.86392 0.86266 0.88450 0.85907 0.92026 0.86704 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.21 37.16 0.34 -0.87 16 2 C -0.12 -1.04 5.10 -26.73 -0.14 -1.18 16 3 C 0.18 2.00 0.83 -131.81 -0.11 1.89 16 4 C -0.17 -2.19 8.05 37.16 0.30 -1.89 16 5 C -0.16 -2.07 8.05 37.16 0.30 -1.77 16 6 N -0.73 -8.30 5.10 -49.03 -0.25 -8.55 16 7 C 0.54 7.96 6.06 -13.04 -0.08 7.88 16 8 O -0.51 -9.55 8.40 5.16 0.04 -9.51 16 9 C -0.27 -3.49 9.86 -37.51 -0.37 -3.86 16 10 C 0.03 0.38 9.81 -37.19 -0.37 0.02 16 11 C -0.19 -3.53 4.63 -105.03 -0.49 -4.02 16 12 C 0.02 0.43 6.60 -39.15 -0.26 0.17 16 13 C -0.25 -5.74 9.14 -39.47 -0.36 -6.10 16 14 C 0.17 4.39 6.66 -38.88 -0.26 4.13 16 15 O -0.17 -5.10 9.74 0.76 0.01 -5.09 16 16 C -0.39 -11.13 9.48 30.91 0.29 -10.84 16 17 H 0.09 2.52 5.19 -52.49 -0.27 2.24 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.57 13.67 55.48 0.76 -24.82 16 20 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.21 -4.73 9.97 -39.46 -0.39 -5.12 16 25 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 26 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.44 6.16 -51.93 -0.32 1.12 16 32 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.08 1.35 6.16 -51.93 -0.32 1.03 16 37 H 0.39 3.29 8.45 -40.82 -0.35 2.94 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.10 1.84 6.78 -52.49 -0.36 1.48 16 41 H 0.12 2.90 5.63 -52.48 -0.30 2.61 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -32.70 351.86 -7.41 -40.11 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.18 Total: 8.39 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -2.06 Total: -21.76 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.51 Total: -33.37 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.05 Total: -14.60 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.70 -7.41 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229919379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.484 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds