Wall clock time and date at job start Tue Mar 31 2020 10:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47116 * 59.99779 * 3 2 1 5 5 C 1.53007 * 109.47039 * 299.99944 * 3 2 1 6 6 N 1.46503 * 109.47024 * 180.02562 * 3 2 1 7 7 C 1.34774 * 119.99682 * 180.02562 * 6 3 2 8 8 O 1.21727 * 120.00011 * 359.97438 * 7 6 3 9 9 C 1.46252 * 120.00082 * 180.02562 * 7 6 3 10 10 C 1.35023 * 120.00058 * 186.63870 * 9 7 6 11 11 C 1.46963 * 120.00405 * 13.80289 * 10 9 7 12 12 C 1.40022 * 120.09443 * 39.76301 * 11 10 9 13 13 C 1.37598 * 119.89450 * 180.02562 * 12 11 10 14 14 C 1.39170 * 120.10514 * 0.25281 * 13 12 11 15 15 O 1.35569 * 119.90184 * 179.72182 * 14 13 12 16 16 C 1.34777 * 117.00196 * 353.54601 * 15 14 13 17 17 H 1.07999 * 119.99722 * 5.12258 * 16 15 14 18 18 C 1.38716 * 120.00268 * 185.12354 * 16 15 14 19 19 N 1.31503 * 119.99888 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47200 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46945 * 120.00532 * 20 18 16 23 23 H 1.48505 * 109.47047 * 240.00292 * 20 18 16 24 24 C 1.39186 * 120.19957 * 359.49189 * 14 13 12 25 25 C 1.37597 * 120.09940 * 0.50767 * 24 14 13 26 26 H 1.08996 * 109.47412 * 60.00544 * 1 2 3 27 27 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47424 * 299.99688 * 1 2 3 29 29 H 1.09004 * 109.47103 * 239.99939 * 2 1 3 30 30 H 1.09002 * 109.47569 * 120.00161 * 2 1 3 31 31 H 1.08996 * 109.47109 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.46801 * 300.00276 * 4 3 2 33 33 H 1.09002 * 109.46590 * 60.00472 * 4 3 2 34 34 H 1.08997 * 109.46805 * 300.00093 * 5 3 2 35 35 H 1.09004 * 109.46814 * 59.99908 * 5 3 2 36 36 H 1.08996 * 109.47104 * 179.97438 * 5 3 2 37 37 H 0.96995 * 120.00279 * 359.97438 * 6 3 2 38 38 H 1.07997 * 120.00094 * 6.62813 * 9 7 6 39 39 H 1.08002 * 119.99945 * 193.81386 * 10 9 7 40 40 H 1.08001 * 120.05452 * 359.97438 * 12 11 10 41 41 H 1.08003 * 119.94895 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00134 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.94953 * 180.25861 * 24 14 13 44 44 H 1.08001 * 120.05145 * 179.76551 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5300 2.1637 -1.2493 6 7 3.5050 1.4424 -0.0006 7 6 4.1788 2.6096 -0.0002 8 8 3.5702 3.6638 0.0002 9 6 5.6414 2.6097 -0.0014 10 6 6.3165 3.7711 0.1342 11 6 5.6140 4.9816 0.5824 12 6 4.6442 4.8985 1.5890 13 6 3.9886 6.0344 2.0051 14 6 4.2842 7.2637 1.4235 15 8 3.6316 8.3793 1.8327 16 6 2.6194 8.2104 2.7064 17 1 2.4141 7.2308 3.1121 18 6 1.8412 9.2947 3.0844 19 7 2.0908 10.4874 2.5900 20 14 0.4378 9.0603 4.2947 21 1 0.3659 7.6333 4.6991 22 1 0.6730 9.9031 5.4946 23 1 -0.8409 9.4585 3.6531 24 6 5.2511 7.3519 0.4263 25 6 5.9119 6.2214 0.0038 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8929 3.1915 1.2490 32 1 0.4400 2.1637 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8933 1.6499 -2.1392 35 1 0.4399 2.1637 -1.2493 36 1 1.8929 3.1915 -1.2491 37 1 3.9900 0.6024 -0.0006 38 1 6.1813 1.6808 -0.1105 39 1 7.3730 3.8106 -0.0869 40 1 4.4106 3.9442 2.0375 41 1 3.2401 5.9712 2.7812 42 1 1.5464 11.2456 2.8541 43 1 5.4803 8.3086 -0.0194 44 1 6.6594 6.2902 -0.7727 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229919379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:48 Heat of formation + Delta-G solvation = -39.070760 kcal Electronic energy + Delta-G solvation = -24943.298162 eV Core-core repulsion = 21440.221826 eV Total energy + Delta-G solvation = -3503.076336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32828 -40.55233 -38.68567 -37.56872 -34.57940 -34.02550 -33.58964 -31.77085 -30.61514 -29.45006 -28.25876 -27.35880 -25.77594 -24.29649 -23.43659 -22.38212 -20.33518 -20.09118 -19.86978 -19.02006 -17.94989 -17.03174 -16.49279 -16.25263 -16.02245 -15.75479 -15.61943 -15.47972 -15.10552 -14.95502 -14.60374 -14.33754 -14.16230 -14.06572 -13.76411 -13.57342 -13.24709 -13.04454 -12.95732 -12.80526 -12.67470 -12.52553 -12.36634 -12.22135 -12.19253 -12.12131 -11.61469 -11.56815 -11.21693 -10.92530 -10.40012 -10.34144 -9.95944 -9.49974 -8.53118 -8.49085 -6.16598 -0.00418 0.73467 1.17454 1.30509 1.42462 1.49464 2.15084 2.41830 2.56626 2.86568 3.22578 3.53584 3.75709 3.97726 4.04264 4.07167 4.12240 4.15688 4.22859 4.44538 4.50953 4.56747 4.64064 4.70479 4.74821 4.78357 4.84952 4.96549 5.01426 5.06515 5.10729 5.12269 5.13578 5.22666 5.27032 5.37183 5.43263 5.47013 5.54450 5.68763 5.74079 5.77630 5.90072 6.01968 6.26554 6.85816 6.94193 7.58197 7.75838 8.73031 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012624 B = 0.004417 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.516505 B = 6337.414831 C = 8107.162817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C 0.176 3.824 4 C -0.164 4.164 5 C -0.160 4.160 6 N -0.712 5.712 7 C 0.525 3.475 8 O -0.556 6.556 9 C -0.236 4.236 10 C 0.003 3.997 11 C -0.162 4.162 12 C 0.020 3.980 13 C -0.258 4.258 14 C 0.128 3.872 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.095 0.905 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.018 2.982 21 H -0.256 1.256 22 H -0.262 1.262 23 H -0.266 1.266 24 C -0.224 4.224 25 C -0.044 4.044 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.413 0.587 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.274 0.726 43 H 0.113 0.887 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -25.783 -5.430 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C 0.090 3.910 4 C -0.222 4.222 5 C -0.218 4.218 6 N -0.365 5.365 7 C 0.316 3.684 8 O -0.436 6.436 9 C -0.257 4.257 10 C -0.016 4.016 11 C -0.163 4.163 12 C 0.001 3.999 13 C -0.277 4.277 14 C 0.078 3.922 15 O -0.135 6.135 16 C -0.490 4.490 17 H 0.112 0.888 18 C -0.218 4.218 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.191 1.191 24 C -0.243 4.243 25 C -0.062 4.062 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.249 0.751 38 H 0.188 0.812 39 H 0.185 0.815 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.014 -24.619 -5.475 25.400 hybrid contribution -0.723 0.356 0.551 0.976 sum 2.291 -24.263 -4.925 24.864 Atomic orbital electron populations 1.21875 0.94551 1.02665 1.02166 1.21703 0.97107 0.92793 1.03595 1.20271 0.79615 0.96712 0.94399 1.22238 1.01533 1.00934 0.97508 1.22204 1.01497 1.00807 0.97332 1.46013 1.06540 1.08630 1.75324 1.19030 0.89632 0.83646 0.76117 1.90955 1.70788 1.32055 1.49786 1.23101 0.91945 1.00269 1.10344 1.22552 1.00098 0.89690 0.89285 1.18873 1.01979 0.94172 1.01248 1.20736 0.90624 0.95030 0.93469 1.20965 1.06945 0.93297 1.06489 1.20052 0.92371 0.86837 0.92989 1.83861 1.43511 1.29331 1.56842 1.21823 1.08317 0.97338 1.21505 0.88779 1.26586 1.01147 0.93726 1.00381 1.70162 1.40722 1.00476 1.44247 0.84554 0.75779 0.79359 0.76632 1.17982 1.18691 1.19083 1.20296 1.02251 1.00249 1.01527 1.21132 0.97370 0.90123 0.97597 0.92490 0.90932 0.92779 0.89950 0.90258 0.94027 0.91246 0.92336 0.91984 0.91208 0.94097 0.75057 0.81197 0.81545 0.87119 0.87650 0.91698 0.86928 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.21 71.98 0.66 -1.34 16 2 C -0.11 -1.47 5.10 30.59 0.16 -1.31 16 3 C 0.18 3.58 0.83 3.61 0.00 3.58 16 4 C -0.16 -4.22 8.05 71.98 0.58 -3.64 16 5 C -0.16 -3.87 8.05 71.98 0.58 -3.29 16 6 N -0.71 -13.53 5.10 -427.23 -2.18 -15.71 16 7 C 0.53 13.82 6.06 86.33 0.52 14.34 16 8 O -0.56 -20.62 8.40 -4.43 -0.04 -20.66 16 9 C -0.24 -4.69 9.86 23.61 0.23 -4.45 16 10 C 0.00 0.07 9.81 23.82 0.23 0.30 16 11 C -0.16 -5.63 4.63 -20.13 -0.09 -5.73 16 12 C 0.02 0.80 6.60 22.55 0.15 0.95 16 13 C -0.26 -12.85 9.14 22.34 0.20 -12.65 16 14 C 0.13 7.04 6.66 22.72 0.15 7.19 16 15 O -0.23 -14.80 9.74 -20.21 -0.20 -15.00 16 16 C -0.41 -25.84 9.48 67.93 0.64 -25.20 16 17 H 0.09 5.56 5.19 -2.91 -0.02 5.55 16 18 C -0.02 -1.24 5.49 84.86 0.47 -0.78 16 19 N -0.92 -58.49 13.67 21.62 0.30 -58.19 16 20 Si 1.02 45.25 29.55 68.60 2.03 47.28 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C -0.22 -10.46 9.97 22.35 0.22 -10.24 16 25 C -0.04 -1.63 9.78 22.55 0.22 -1.41 16 26 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 0.79 6.43 -2.39 -0.02 0.77 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.45 6.16 -2.39 -0.01 1.44 16 32 H 0.07 1.64 6.43 -2.39 -0.02 1.62 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.53 6.43 -2.39 -0.02 1.51 16 36 H 0.04 1.35 6.16 -2.39 -0.01 1.33 16 37 H 0.41 4.63 8.45 -92.71 -0.78 3.85 16 38 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 40 H 0.11 4.13 6.78 -2.91 -0.02 4.11 16 41 H 0.11 5.47 5.63 -2.91 -0.02 5.45 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 44 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -81.95 351.86 5.08 -76.87 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.23 Total: 29.07 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 4.94 Total: -43.66 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.88 Total: -73.90 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.23 Total: -35.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -81.95 5.08 -76.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229919379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.802 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds