Wall clock time and date at job start Tue Mar 31 2020 10:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 C 1.53000 * 109.47475 * 239.99524 * 2 1 3 5 5 C 1.50701 * 109.46848 * 119.99498 * 2 1 3 6 6 C 1.33001 * 120.00010 * 69.91837 * 5 2 1 7 7 C 1.47099 * 119.99758 * 352.00556 * 6 5 2 8 8 O 1.21613 * 120.00201 * 354.32876 * 7 6 5 9 9 N 1.34777 * 119.99886 * 174.32620 * 7 6 5 10 10 C 1.46507 * 119.99910 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.93716 * 89.99814 * 11 10 9 13 13 C 1.38097 * 120.07404 * 180.02562 * 12 11 10 14 14 C 1.38875 * 119.92911 * 359.97438 * 13 12 11 15 15 O 1.35748 * 120.07004 * 180.02562 * 14 13 12 16 16 C 1.34829 * 116.99816 * 6.08347 * 15 14 13 17 17 H 1.07999 * 119.99926 * 354.90595 * 16 15 14 18 18 C 1.38662 * 119.99878 * 174.89733 * 16 15 14 19 19 N 1.31552 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47208 * 60.00218 * 20 18 16 22 22 H 1.48491 * 109.47214 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47249 * 300.00162 * 20 18 16 24 24 C 1.38880 * 119.86284 * 0.27726 * 14 13 12 25 25 C 1.38102 * 119.92975 * 359.49158 * 24 14 13 26 26 H 1.08993 * 109.47291 * 336.69165 * 1 2 3 27 27 H 1.09007 * 109.46868 * 96.68901 * 1 2 3 28 28 H 1.08997 * 109.47414 * 216.68413 * 1 2 3 29 29 H 1.08998 * 109.46630 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46948 * 299.99084 * 3 2 1 31 31 H 1.08995 * 109.46930 * 59.99991 * 3 2 1 32 32 H 1.08997 * 109.46789 * 268.56542 * 4 2 1 33 33 H 1.08995 * 109.46533 * 28.56850 * 4 2 1 34 34 H 1.08999 * 109.46888 * 148.56635 * 4 2 1 35 35 H 1.08003 * 120.00301 * 249.91774 * 5 2 1 36 36 H 1.07995 * 119.99735 * 172.00156 * 6 5 2 37 37 H 0.97003 * 120.00039 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47222 * 60.00017 * 10 9 7 39 39 H 1.09000 * 109.46663 * 299.99436 * 10 9 7 40 40 H 1.08007 * 119.95704 * 359.97438 * 12 11 10 41 41 H 1.07992 * 120.03309 * 179.97438 * 13 12 11 42 42 H 0.96992 * 120.00360 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.03568 * 179.72857 * 24 14 13 44 44 H 1.07999 * 119.96567 * 180.23529 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0322 -0.7103 1.2306 6 6 1.8810 -2.0266 1.3469 7 6 1.0721 -2.7637 0.3639 8 8 0.4579 -2.1590 -0.4941 9 7 1.0118 -4.1091 0.4141 10 6 0.2066 -4.8433 -0.5653 11 6 0.3074 -6.3217 -0.2912 12 6 -0.5959 -6.9286 0.5623 13 6 -0.5058 -8.2831 0.8159 14 6 0.4929 -9.0361 0.2124 15 8 0.5837 -10.3678 0.4592 16 6 -0.3989 -10.9219 1.1977 17 1 -1.1652 -10.2973 1.6325 18 6 -0.4256 -12.2936 1.3987 19 7 0.5080 -13.0543 0.8694 20 14 -1.7874 -13.0613 2.4213 21 1 -3.1020 -12.7645 1.7977 22 1 -1.5899 -14.5317 2.4847 23 1 -1.7527 -12.4980 3.7949 24 6 1.4017 -8.4228 -0.6401 25 6 1.3034 -7.0688 -0.8934 26 1 -0.3633 0.9437 0.4066 27 1 -0.3633 -0.1197 -1.0207 28 1 -0.3634 -0.8241 0.6139 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.1854 -1.7780 -1.0246 33 1 1.3102 -0.6175 -2.0520 34 1 2.9879 -0.2823 -1.5606 35 1 2.5150 -0.1506 2.0180 36 1 2.3521 -2.5541 2.1630 37 1 1.5020 -4.5915 1.0982 38 1 0.5754 -4.6335 -1.5693 39 1 -0.8345 -4.5299 -0.4877 40 1 -1.3721 -6.3422 1.0316 41 1 -1.2113 -8.7562 1.4828 42 1 0.4895 -14.0138 1.0103 43 1 2.1822 -9.0049 -1.1075 44 1 2.0075 -6.5920 -1.5592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255118625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:20 Heat of formation + Delta-G solvation = -4.617756 kcal Electronic energy + Delta-G solvation = -23806.891677 eV Core-core repulsion = 20305.309334 eV Total energy + Delta-G solvation = -3501.582342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.52970 -39.16090 -37.39909 -36.50262 -34.27210 -32.41578 -31.89169 -30.29453 -29.78512 -27.31175 -27.22296 -26.08629 -25.00960 -22.94876 -22.06528 -20.71763 -20.62811 -18.64058 -18.07642 -17.06724 -16.94112 -15.87027 -15.59522 -15.09770 -14.72160 -14.60294 -14.28288 -14.05870 -13.99483 -13.68491 -13.55893 -13.50867 -12.99001 -12.79417 -12.66940 -12.32535 -12.24373 -11.86234 -11.71898 -11.40984 -11.12316 -10.98383 -10.93604 -10.87583 -10.79023 -10.72003 -10.62818 -10.50828 -9.54050 -9.44116 -9.38035 -8.90952 -8.71961 -8.29668 -7.33488 -6.53629 -4.12693 1.28634 2.07079 2.11843 3.07996 3.09013 3.12308 3.31320 3.51180 3.89744 4.47177 4.52144 4.63742 4.96027 4.98009 5.01074 5.16152 5.22952 5.27305 5.30063 5.42037 5.52041 5.62851 5.65230 5.78450 5.79787 5.82317 5.85034 5.92857 6.06550 6.09885 6.11069 6.19131 6.33861 6.34323 6.44235 6.53004 6.58278 6.64311 6.79394 6.94682 7.13063 7.26310 7.34042 7.66814 7.71849 7.90847 8.34047 8.91512 9.59598 10.63788 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.039409 B = 0.002288 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.328765 B =12235.968203 C =12484.735049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.041 4.041 3 C -0.142 4.142 4 C -0.121 4.121 5 C -0.054 4.054 6 C -0.222 4.222 7 C 0.527 3.473 8 O -0.525 6.525 9 N -0.719 5.719 10 C 0.181 3.819 11 C -0.214 4.214 12 C -0.051 4.051 13 C -0.237 4.237 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.195 4.195 25 C -0.055 4.055 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 21.820 0.844 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.178 4.178 5 C -0.074 4.074 6 C -0.243 4.243 7 C 0.317 3.683 8 O -0.406 6.406 9 N -0.370 5.370 10 C 0.059 3.941 11 C -0.216 4.216 12 C -0.070 4.070 13 C -0.256 4.256 14 C 0.105 3.895 15 O -0.076 6.076 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.215 4.215 25 C -0.073 4.073 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.078 21.771 0.142 21.871 hybrid contribution -0.404 -0.789 1.039 1.366 sum 1.675 20.982 1.181 21.082 Atomic orbital electron populations 1.21873 0.92469 0.99162 1.02806 1.19693 0.96977 0.94113 0.93307 1.22018 1.00592 0.95573 1.01726 1.22195 0.98751 1.00882 0.95987 1.23851 0.92607 0.94372 0.96541 1.22645 1.04034 0.95752 1.01862 1.18510 0.82510 0.82137 0.85174 1.90920 1.45711 1.66809 1.37110 1.46307 1.50433 1.06126 1.34137 1.19935 0.94978 0.87697 0.91536 1.19226 1.01641 0.93983 1.06735 1.20638 0.96806 0.93999 0.95540 1.21154 1.03183 0.94272 1.07016 1.19438 0.92805 0.85347 0.91881 1.83976 1.44967 1.16109 1.62529 1.21306 1.05251 0.91177 1.29269 0.88986 1.25320 0.98344 0.95102 0.97700 1.70020 1.32165 1.05757 1.41420 0.85762 0.79788 0.78253 0.79546 1.19414 1.20209 1.19441 1.20217 1.02721 0.94642 1.03888 1.20529 0.96367 0.92826 0.97616 0.95285 0.92132 0.91855 0.92864 0.92423 0.92825 0.91440 0.92289 0.95117 0.86019 0.85637 0.76538 0.91652 0.91713 0.87448 0.85451 0.91817 0.86393 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 7.60 37.16 0.28 -0.88 16 2 C -0.04 -0.40 0.75 -155.66 -0.12 -0.52 16 3 C -0.14 -1.11 8.02 37.16 0.30 -0.81 16 4 C -0.12 -1.35 7.54 37.16 0.28 -1.07 16 5 C -0.05 -0.48 8.50 -36.12 -0.31 -0.79 16 6 C -0.22 -2.13 9.49 -37.81 -0.36 -2.49 16 7 C 0.53 6.35 5.80 -12.67 -0.07 6.28 16 8 O -0.53 -7.28 8.56 5.27 0.05 -7.23 16 9 N -0.72 -8.61 5.54 -62.67 -0.35 -8.96 16 10 C 0.18 2.45 5.80 -5.19 -0.03 2.42 16 11 C -0.21 -3.39 5.25 -104.58 -0.55 -3.94 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.24 -4.88 9.17 -39.40 -0.36 -5.24 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.17 -4.79 9.76 0.06 0.00 -4.79 16 16 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 17 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 20 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.20 -3.92 9.99 -39.39 -0.39 -4.31 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 26 H 0.03 0.28 7.73 -51.93 -0.40 -0.12 16 27 H 0.06 0.73 6.88 -51.93 -0.36 0.37 16 28 H 0.06 0.79 5.75 -51.93 -0.30 0.49 16 29 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 0.84 4.52 -51.93 -0.23 0.61 16 33 H 0.06 0.71 7.13 -51.93 -0.37 0.34 16 34 H 0.03 0.30 7.80 -51.93 -0.40 -0.10 16 35 H 0.12 0.80 8.00 -52.48 -0.42 0.38 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.40 4.36 8.45 -40.82 -0.34 4.02 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.13 2.64 5.65 -52.49 -0.30 2.35 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -29.53 355.51 -7.70 -37.24 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.33 Total: 7.17 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.16 Total: -19.87 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.41 Total: -32.83 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.05 Total: -12.02 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.53 -7.70 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255118625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.620 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds