Wall clock time and date at job start Tue Mar 31 2020 10:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 C 1.53000 * 109.47475 * 239.99524 * 2 1 3 5 5 C 1.50701 * 109.46848 * 119.99498 * 2 1 3 6 6 C 1.33001 * 120.00010 * 69.91837 * 5 2 1 7 7 C 1.47099 * 119.99758 * 352.00556 * 6 5 2 8 8 O 1.21613 * 120.00201 * 354.32876 * 7 6 5 9 9 N 1.34777 * 119.99886 * 174.32620 * 7 6 5 10 10 C 1.46507 * 119.99910 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.93716 * 89.99814 * 11 10 9 13 13 C 1.38097 * 120.07404 * 180.02562 * 12 11 10 14 14 C 1.38875 * 119.92911 * 359.97438 * 13 12 11 15 15 O 1.35748 * 120.07004 * 180.02562 * 14 13 12 16 16 C 1.34829 * 116.99816 * 6.08347 * 15 14 13 17 17 H 1.07999 * 119.99926 * 354.90595 * 16 15 14 18 18 C 1.38662 * 119.99878 * 174.89733 * 16 15 14 19 19 N 1.31552 * 120.00322 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47208 * 60.00218 * 20 18 16 22 22 H 1.48491 * 109.47214 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47249 * 300.00162 * 20 18 16 24 24 C 1.38880 * 119.86284 * 0.27726 * 14 13 12 25 25 C 1.38102 * 119.92975 * 359.49158 * 24 14 13 26 26 H 1.08993 * 109.47291 * 336.69165 * 1 2 3 27 27 H 1.09007 * 109.46868 * 96.68901 * 1 2 3 28 28 H 1.08997 * 109.47414 * 216.68413 * 1 2 3 29 29 H 1.08998 * 109.46630 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46948 * 299.99084 * 3 2 1 31 31 H 1.08995 * 109.46930 * 59.99991 * 3 2 1 32 32 H 1.08997 * 109.46789 * 268.56542 * 4 2 1 33 33 H 1.08995 * 109.46533 * 28.56850 * 4 2 1 34 34 H 1.08999 * 109.46888 * 148.56635 * 4 2 1 35 35 H 1.08003 * 120.00301 * 249.91774 * 5 2 1 36 36 H 1.07995 * 119.99735 * 172.00156 * 6 5 2 37 37 H 0.97003 * 120.00039 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47222 * 60.00017 * 10 9 7 39 39 H 1.09000 * 109.46663 * 299.99436 * 10 9 7 40 40 H 1.08007 * 119.95704 * 359.97438 * 12 11 10 41 41 H 1.07992 * 120.03309 * 179.97438 * 13 12 11 42 42 H 0.96992 * 120.00360 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.03568 * 179.72857 * 24 14 13 44 44 H 1.07999 * 119.96567 * 180.23529 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0322 -0.7103 1.2306 6 6 1.8810 -2.0266 1.3469 7 6 1.0721 -2.7637 0.3639 8 8 0.4579 -2.1590 -0.4941 9 7 1.0118 -4.1091 0.4141 10 6 0.2066 -4.8433 -0.5653 11 6 0.3074 -6.3217 -0.2912 12 6 -0.5959 -6.9286 0.5623 13 6 -0.5058 -8.2831 0.8159 14 6 0.4929 -9.0361 0.2124 15 8 0.5837 -10.3678 0.4592 16 6 -0.3989 -10.9219 1.1977 17 1 -1.1652 -10.2973 1.6325 18 6 -0.4256 -12.2936 1.3987 19 7 0.5080 -13.0543 0.8694 20 14 -1.7874 -13.0613 2.4213 21 1 -3.1020 -12.7645 1.7977 22 1 -1.5899 -14.5317 2.4847 23 1 -1.7527 -12.4980 3.7949 24 6 1.4017 -8.4228 -0.6401 25 6 1.3034 -7.0688 -0.8934 26 1 -0.3633 0.9437 0.4066 27 1 -0.3633 -0.1197 -1.0207 28 1 -0.3634 -0.8241 0.6139 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.1854 -1.7780 -1.0246 33 1 1.3102 -0.6175 -2.0520 34 1 2.9879 -0.2823 -1.5606 35 1 2.5150 -0.1506 2.0180 36 1 2.3521 -2.5541 2.1630 37 1 1.5020 -4.5915 1.0982 38 1 0.5754 -4.6335 -1.5693 39 1 -0.8345 -4.5299 -0.4877 40 1 -1.3721 -6.3422 1.0316 41 1 -1.2113 -8.7562 1.4828 42 1 0.4895 -14.0138 1.0103 43 1 2.1822 -9.0049 -1.1075 44 1 2.0075 -6.5920 -1.5592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255118625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:17 Heat of formation + Delta-G solvation = -21.869415 kcal Electronic energy + Delta-G solvation = -23807.639765 eV Core-core repulsion = 20305.309334 eV Total energy + Delta-G solvation = -3502.330430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 7.48 seconds Orbital eigenvalues (eV) -41.45834 -40.78500 -38.74511 -37.65800 -35.40606 -34.27764 -32.75505 -31.83994 -31.12789 -28.10301 -28.01419 -27.73197 -26.51975 -23.89549 -23.65134 -22.10256 -21.58565 -19.89722 -19.52446 -18.81855 -17.77640 -16.93332 -16.70473 -16.33587 -16.26309 -16.01421 -15.55347 -15.45239 -15.09073 -14.94481 -14.71126 -14.41485 -14.37419 -14.28831 -13.73881 -13.49786 -13.44403 -13.01857 -12.99241 -12.62061 -12.52469 -12.39076 -12.24220 -12.14012 -11.93958 -11.75600 -11.70319 -11.42304 -11.20796 -10.82186 -10.39637 -10.20744 -9.83055 -9.70003 -9.00547 -8.48532 -6.16910 0.53152 0.55261 0.57033 1.35394 1.45280 1.51324 2.16916 2.44291 2.45021 2.88327 3.17592 3.48888 3.77269 3.87467 3.94750 4.02954 4.16791 4.20472 4.26179 4.46797 4.51837 4.56231 4.66361 4.77456 4.80921 4.82762 4.89245 4.98257 5.02214 5.04057 5.13665 5.25580 5.26033 5.27040 5.30582 5.39835 5.51600 5.55625 5.58036 5.62881 5.68679 5.75164 5.78008 6.00809 6.15733 6.74612 6.96030 7.41907 7.75289 8.74008 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.039409 B = 0.002288 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.328765 B =12235.968203 C =12484.735049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.046 4.046 6 C -0.231 4.231 7 C 0.523 3.477 8 O -0.547 6.547 9 N -0.717 5.717 10 C 0.189 3.811 11 C -0.181 4.181 12 C -0.047 4.047 13 C -0.243 4.243 14 C 0.121 3.879 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.103 0.897 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.205 4.205 25 C -0.045 4.045 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.115 0.885 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 25.199 1.857 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.046 4.046 3 C -0.195 4.195 4 C -0.174 4.174 5 C -0.065 4.065 6 C -0.252 4.252 7 C 0.314 3.686 8 O -0.428 6.428 9 N -0.369 5.369 10 C 0.065 3.935 11 C -0.182 4.182 12 C -0.065 4.065 13 C -0.263 4.263 14 C 0.070 3.930 15 O -0.135 6.135 16 C -0.490 4.490 17 H 0.120 0.880 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.224 4.224 25 C -0.063 4.063 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.243 0.757 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.156 0.844 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.854 25.219 1.153 25.314 hybrid contribution -0.283 -1.405 0.567 1.542 sum 1.571 23.814 1.720 23.928 Atomic orbital electron populations 1.21780 0.93556 0.99073 1.01314 1.19739 0.96101 0.95495 0.93306 1.21982 1.01205 0.94060 1.02272 1.22128 0.98755 1.00262 0.96288 1.24110 0.91692 0.94256 0.96487 1.22731 1.04416 0.96039 1.02015 1.18950 0.82406 0.81920 0.85298 1.90931 1.46637 1.67125 1.38102 1.46147 1.50433 1.06291 1.34029 1.19792 0.95641 0.85735 0.92291 1.19541 0.99543 0.95293 1.03846 1.20932 0.97591 0.92656 0.95342 1.21243 1.02506 0.95648 1.06873 1.19989 0.94778 0.84555 0.93642 1.83946 1.46371 1.18349 1.64845 1.21789 1.05727 0.91954 1.29573 0.87953 1.26592 1.01036 0.95360 0.99022 1.70167 1.34999 1.06025 1.44441 0.84656 0.76423 0.77178 0.78042 1.18251 1.19727 1.18051 1.20452 1.02245 0.96138 1.03558 1.20871 0.96827 0.91305 0.97298 0.94042 0.93982 0.93479 0.91851 0.92694 0.91554 0.92838 0.93974 0.94170 0.82993 0.83346 0.75712 0.91194 0.91459 0.84436 0.86199 0.91789 0.86719 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 7.60 71.98 0.55 -1.49 16 2 C -0.05 -0.79 0.75 -52.93 -0.04 -0.83 16 3 C -0.14 -1.73 8.02 71.98 0.58 -1.15 16 4 C -0.12 -2.42 7.54 71.98 0.54 -1.87 16 5 C -0.05 -0.65 8.50 24.52 0.21 -0.44 16 6 C -0.23 -3.68 9.49 23.43 0.22 -3.46 16 7 C 0.52 11.29 5.80 86.57 0.50 11.79 16 8 O -0.55 -14.22 8.56 -4.07 -0.03 -14.25 16 9 N -0.72 -14.99 5.54 -470.45 -2.61 -17.60 16 10 C 0.19 4.49 5.80 85.63 0.50 4.98 16 11 C -0.18 -5.20 5.25 -19.83 -0.10 -5.31 16 12 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 13 C -0.24 -10.05 9.17 22.39 0.21 -9.85 16 14 C 0.12 5.80 6.65 22.58 0.15 5.95 16 15 O -0.23 -13.44 9.76 -22.71 -0.22 -13.66 16 16 C -0.41 -23.58 9.49 67.92 0.64 -22.94 16 17 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 18 C -0.02 -1.24 5.49 84.84 0.47 -0.78 16 19 N -0.92 -55.56 13.67 21.61 0.30 -55.27 16 20 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 24 C -0.20 -8.26 9.99 22.39 0.22 -8.04 16 25 C -0.04 -1.39 9.69 22.25 0.22 -1.17 16 26 H 0.04 0.71 7.73 -2.39 -0.02 0.69 16 27 H 0.04 0.99 6.88 -2.38 -0.02 0.97 16 28 H 0.05 1.10 5.75 -2.39 -0.01 1.09 16 29 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.05 1.24 4.52 -2.39 -0.01 1.23 16 33 H 0.04 0.98 7.13 -2.39 -0.02 0.97 16 34 H 0.04 0.72 7.80 -2.39 -0.02 0.70 16 35 H 0.15 1.26 8.00 -2.91 -0.02 1.24 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.41 7.52 8.45 -92.71 -0.78 6.74 16 38 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 39 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 40 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.12 5.06 5.65 -2.91 -0.02 5.05 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.01 355.51 4.76 -64.25 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.23 Total: 28.39 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 5.07 Total: -35.89 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -2.31 Total: -72.86 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.26 Total: -27.91 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -69.01 4.76 -64.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255118625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.382 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.48 seconds