Wall clock time and date at job start Tue Mar 31 2020 10:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46792 * 2 1 4 4 C 1.52992 * 109.46964 * 174.99834 * 3 2 1 5 5 C 1.53000 * 109.47144 * 184.99518 * 4 3 2 6 6 N 1.46498 * 109.46700 * 294.99784 * 3 2 1 7 7 C 1.34785 * 119.99521 * 155.00188 * 6 3 2 8 8 O 1.21715 * 120.00261 * 359.97438 * 7 6 3 9 9 C 1.46255 * 119.99650 * 180.27579 * 7 6 3 10 10 C 1.35025 * 119.99918 * 172.93880 * 9 7 6 11 11 C 1.46960 * 119.99925 * 348.68186 * 10 9 7 12 12 C 1.40028 * 120.10009 * 316.40557 * 11 10 9 13 13 C 1.37594 * 119.89934 * 179.76739 * 12 11 10 14 14 C 1.39184 * 120.09927 * 0.50673 * 13 12 11 15 15 O 1.35570 * 119.89843 * 179.76454 * 14 13 12 16 16 C 1.34783 * 116.99886 * 174.33946 * 15 14 13 17 17 H 1.07998 * 119.99829 * 5.06153 * 16 15 14 18 18 C 1.38721 * 119.99912 * 185.05607 * 16 15 14 19 19 N 1.31504 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47040 * 60.00415 * 20 18 16 22 22 H 1.48501 * 109.47112 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47374 * 300.00308 * 20 18 16 24 24 C 1.39177 * 120.19984 * 359.74795 * 14 13 12 25 25 C 1.37596 * 120.10326 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47657 * 299.99975 * 1 2 3 27 27 H 1.08999 * 109.47507 * 60.00670 * 1 2 3 28 28 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47162 * 240.00157 * 2 1 3 30 30 H 1.08999 * 109.47507 * 119.99330 * 2 1 3 31 31 H 1.08995 * 109.47090 * 54.99807 * 3 2 1 32 32 H 1.08993 * 109.47858 * 305.00164 * 4 3 2 33 33 H 1.09008 * 109.47284 * 65.00147 * 4 3 2 34 34 H 1.09005 * 109.46673 * 60.00664 * 5 4 3 35 35 H 1.09004 * 109.47472 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47787 * 300.00458 * 5 4 3 37 37 H 0.96995 * 120.00513 * 335.00297 * 6 3 2 38 38 H 1.08005 * 120.00497 * 352.93596 * 9 7 6 39 39 H 1.08000 * 120.00300 * 168.68630 * 10 9 7 40 40 H 1.08007 * 120.05004 * 0.02562 * 12 11 10 41 41 H 1.07995 * 119.95777 * 180.23340 * 13 12 11 42 42 H 0.96998 * 119.99874 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.94407 * 179.97438 * 24 14 13 44 44 H 1.08004 * 120.04756 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4445 0.1258 5 6 4.0643 2.8852 0.2510 6 7 1.6523 2.0975 -1.2518 7 6 1.5254 3.4385 -1.2996 8 8 1.7324 4.1053 -0.3026 9 6 1.1326 4.0918 -2.5478 10 6 0.8668 5.4155 -2.5624 11 6 0.7274 6.1509 -1.2976 12 6 -0.0068 5.5982 -0.2411 13 6 -0.1307 6.2882 0.9428 14 6 0.4636 7.5384 1.0876 15 8 0.3350 8.2168 2.2542 16 6 1.0293 9.3659 2.3737 17 1 1.5873 9.7495 1.5324 18 6 1.0269 10.0558 3.5772 19 7 0.3478 9.5884 4.6017 20 14 1.9886 11.6487 3.7424 21 1 1.4786 12.6389 2.7602 22 1 1.8251 12.1852 5.1174 23 1 3.4270 11.3879 3.4810 24 6 1.1898 8.0940 0.0383 25 6 1.3238 7.4088 -1.1473 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6053 1.9816 0.8418 32 1 3.8570 0.8802 1.0113 33 1 4.0029 0.9837 -0.7597 34 1 3.6262 3.3459 1.1365 35 1 5.1506 2.8865 0.3411 36 1 3.7721 3.4495 -0.6345 37 1 1.4870 1.5661 -2.0463 38 1 1.0552 3.5154 -3.4579 39 1 0.7565 5.9339 -3.5034 40 1 -0.4717 4.6298 -0.3540 41 1 -0.6935 5.8611 1.7596 42 1 0.3465 10.0706 5.4433 43 1 1.6489 9.0646 0.1550 44 1 1.8879 7.8406 -1.9608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255543492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:56 Heat of formation + Delta-G solvation = -25.135733 kcal Electronic energy + Delta-G solvation = -24693.867317 eV Core-core repulsion = 21191.395249 eV Total energy + Delta-G solvation = -3502.472068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.97619 -38.78475 -37.07564 -35.94543 -33.04057 -32.33783 -32.11899 -31.89171 -30.08313 -28.04920 -26.42361 -25.38261 -23.32813 -22.05860 -21.77080 -21.16000 -20.48944 -19.16860 -17.89331 -17.16191 -16.71749 -16.17916 -15.23028 -14.73356 -14.56772 -14.28193 -14.13414 -14.06932 -13.68548 -13.51012 -13.29005 -13.07734 -12.93806 -12.83778 -12.54462 -12.27728 -12.14330 -11.68459 -11.64073 -11.36134 -11.29210 -11.14111 -10.95151 -10.73789 -10.72135 -10.65671 -10.60913 -10.39387 -9.43135 -9.32813 -9.11886 -8.80779 -8.66122 -7.86801 -6.82281 -6.43229 -3.99056 1.29671 2.46012 2.74534 3.15068 3.17959 3.19176 3.43011 3.71450 3.99350 4.53606 4.72988 4.86474 4.90384 5.11518 5.16689 5.21703 5.26641 5.36614 5.38974 5.39435 5.55409 5.64399 5.72670 5.75850 5.76846 5.88404 5.89780 5.97432 6.09612 6.10324 6.26114 6.28759 6.38123 6.48353 6.62639 6.63963 6.72453 6.82872 7.07064 7.15120 7.39823 7.48936 7.53635 7.77766 7.95737 8.03476 8.65136 9.02412 9.74752 10.74633 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003416 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.071092 B = 8193.569821 C = 8661.527839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.144 3.856 4 C -0.131 4.131 5 C -0.145 4.145 6 N -0.729 5.729 7 C 0.538 3.462 8 O -0.505 6.505 9 C -0.267 4.267 10 C 0.025 3.975 11 C -0.187 4.187 12 C 0.015 3.985 13 C -0.203 4.203 14 C 0.171 3.829 15 O -0.173 6.173 16 C -0.390 4.390 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.251 4.251 25 C -0.042 4.042 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.392 0.608 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.271 0.729 43 H 0.125 0.875 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 -16.252 -13.374 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.039 3.961 4 C -0.170 4.170 5 C -0.202 4.202 6 N -0.382 5.382 7 C 0.328 3.672 8 O -0.381 6.381 9 C -0.288 4.288 10 C 0.005 3.995 11 C -0.188 4.188 12 C -0.004 4.004 13 C -0.222 4.222 14 C 0.117 3.883 15 O -0.076 6.076 16 C -0.466 4.466 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.270 4.270 25 C -0.060 4.060 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.605 -15.727 -12.143 20.039 hybrid contribution 0.574 0.393 -0.439 0.823 sum 3.179 -15.334 -12.582 20.088 Atomic orbital electron populations 1.21764 0.95322 1.01374 1.02501 1.21810 0.96555 0.95806 1.02607 1.21016 0.94302 0.92571 0.88196 1.21945 0.95374 0.98339 1.01332 1.21801 0.99177 0.95631 1.03627 1.46039 1.72121 1.07180 1.12899 1.18408 0.77841 0.81642 0.89310 1.91001 1.48513 1.62785 1.35798 1.22635 1.12483 0.96415 0.97313 1.22315 0.87260 0.92980 0.96905 1.18271 1.08957 0.96659 0.94942 1.20420 0.93853 0.95148 0.90986 1.19995 1.08669 0.94760 0.98803 1.19524 0.91623 0.90704 0.86481 1.83905 1.59649 1.33850 1.30172 1.21342 1.28551 0.97671 0.99075 0.88975 1.25312 0.97383 0.99598 0.94230 1.70011 1.38446 1.38783 1.02261 0.85779 0.79581 0.80111 0.77962 1.19459 1.20266 1.19458 1.20937 1.08719 1.02741 0.94608 1.20731 0.96339 0.92696 0.96260 0.92426 0.92508 0.92857 0.91762 0.90704 0.89258 0.91689 0.92463 0.91863 0.94145 0.92149 0.77447 0.86410 0.86286 0.88134 0.86949 0.91934 0.85748 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.80 37.16 0.36 -0.87 16 2 C -0.13 -1.01 5.47 -26.73 -0.15 -1.16 16 3 C 0.14 1.53 2.26 -67.93 -0.15 1.38 16 4 C -0.13 -1.41 5.61 -26.74 -0.15 -1.56 16 5 C -0.15 -2.03 8.51 37.16 0.32 -1.71 16 6 N -0.73 -7.74 4.48 -55.25 -0.25 -7.99 16 7 C 0.54 7.61 5.34 -13.04 -0.07 7.54 16 8 O -0.50 -9.29 9.31 5.18 0.05 -9.24 16 9 C -0.27 -3.33 9.90 -37.50 -0.37 -3.70 16 10 C 0.03 0.35 9.80 -37.19 -0.36 -0.01 16 11 C -0.19 -3.45 4.54 -105.03 -0.48 -3.92 16 12 C 0.01 0.29 6.59 -39.15 -0.26 0.03 16 13 C -0.20 -4.67 9.97 -39.47 -0.39 -5.07 16 14 C 0.17 4.38 6.66 -38.88 -0.26 4.13 16 15 O -0.17 -5.13 9.74 0.74 0.01 -5.13 16 16 C -0.39 -11.21 9.48 30.91 0.29 -10.92 16 17 H 0.09 2.45 5.18 -52.49 -0.27 2.18 16 18 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 19 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 20 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.25 -5.76 9.14 -39.47 -0.36 -6.12 16 25 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.95 5.64 -51.93 -0.29 0.65 16 37 H 0.39 3.07 8.58 -40.82 -0.35 2.72 16 38 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.10 1.83 7.02 -52.48 -0.37 1.46 16 41 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 2.83 5.62 -52.49 -0.29 2.54 16 44 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.75 359.19 -8.12 -40.87 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.57 Total: 7.28 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.51 Total: -22.16 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.51 Total: -32.91 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.06 Total: -14.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.75 -8.12 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255543492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.734 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds