Wall clock time and date at job start Tue Mar 31 2020 10:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46792 * 2 1 4 4 C 1.52992 * 109.46964 * 174.99834 * 3 2 1 5 5 C 1.53000 * 109.47144 * 184.99518 * 4 3 2 6 6 N 1.46498 * 109.46700 * 294.99784 * 3 2 1 7 7 C 1.34785 * 119.99521 * 155.00188 * 6 3 2 8 8 O 1.21715 * 120.00261 * 359.97438 * 7 6 3 9 9 C 1.46255 * 119.99650 * 180.27579 * 7 6 3 10 10 C 1.35025 * 119.99918 * 172.93880 * 9 7 6 11 11 C 1.46960 * 119.99925 * 348.68186 * 10 9 7 12 12 C 1.40028 * 120.10009 * 316.40557 * 11 10 9 13 13 C 1.37594 * 119.89934 * 179.76739 * 12 11 10 14 14 C 1.39184 * 120.09927 * 0.50673 * 13 12 11 15 15 O 1.35570 * 119.89843 * 179.76454 * 14 13 12 16 16 C 1.34783 * 116.99886 * 174.33946 * 15 14 13 17 17 H 1.07998 * 119.99829 * 5.06153 * 16 15 14 18 18 C 1.38721 * 119.99912 * 185.05607 * 16 15 14 19 19 N 1.31504 * 120.00035 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99732 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47040 * 60.00415 * 20 18 16 22 22 H 1.48501 * 109.47112 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47374 * 300.00308 * 20 18 16 24 24 C 1.39177 * 120.19984 * 359.74795 * 14 13 12 25 25 C 1.37596 * 120.10326 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47657 * 299.99975 * 1 2 3 27 27 H 1.08999 * 109.47507 * 60.00670 * 1 2 3 28 28 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47162 * 240.00157 * 2 1 3 30 30 H 1.08999 * 109.47507 * 119.99330 * 2 1 3 31 31 H 1.08995 * 109.47090 * 54.99807 * 3 2 1 32 32 H 1.08993 * 109.47858 * 305.00164 * 4 3 2 33 33 H 1.09008 * 109.47284 * 65.00147 * 4 3 2 34 34 H 1.09005 * 109.46673 * 60.00664 * 5 4 3 35 35 H 1.09004 * 109.47472 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47787 * 300.00458 * 5 4 3 37 37 H 0.96995 * 120.00513 * 335.00297 * 6 3 2 38 38 H 1.08005 * 120.00497 * 352.93596 * 9 7 6 39 39 H 1.08000 * 120.00300 * 168.68630 * 10 9 7 40 40 H 1.08007 * 120.05004 * 0.02562 * 12 11 10 41 41 H 1.07995 * 119.95777 * 180.23340 * 13 12 11 42 42 H 0.96998 * 119.99874 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.94407 * 179.97438 * 24 14 13 44 44 H 1.08004 * 120.04756 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4445 0.1258 5 6 4.0643 2.8852 0.2510 6 7 1.6523 2.0975 -1.2518 7 6 1.5254 3.4385 -1.2996 8 8 1.7324 4.1053 -0.3026 9 6 1.1326 4.0918 -2.5478 10 6 0.8668 5.4155 -2.5624 11 6 0.7274 6.1509 -1.2976 12 6 -0.0068 5.5982 -0.2411 13 6 -0.1307 6.2882 0.9428 14 6 0.4636 7.5384 1.0876 15 8 0.3350 8.2168 2.2542 16 6 1.0293 9.3659 2.3737 17 1 1.5873 9.7495 1.5324 18 6 1.0269 10.0558 3.5772 19 7 0.3478 9.5884 4.6017 20 14 1.9886 11.6487 3.7424 21 1 1.4786 12.6389 2.7602 22 1 1.8251 12.1852 5.1174 23 1 3.4270 11.3879 3.4810 24 6 1.1898 8.0940 0.0383 25 6 1.3238 7.4088 -1.1473 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6053 1.9816 0.8418 32 1 3.8570 0.8802 1.0113 33 1 4.0029 0.9837 -0.7597 34 1 3.6262 3.3459 1.1365 35 1 5.1506 2.8865 0.3411 36 1 3.7721 3.4495 -0.6345 37 1 1.4870 1.5661 -2.0463 38 1 1.0552 3.5154 -3.4579 39 1 0.7565 5.9339 -3.5034 40 1 -0.4717 4.6298 -0.3540 41 1 -0.6935 5.8611 1.7596 42 1 0.3465 10.0706 5.4433 43 1 1.6489 9.0646 0.1550 44 1 1.8879 7.8406 -1.9608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255543492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:54 Heat of formation + Delta-G solvation = -46.125616 kcal Electronic energy + Delta-G solvation = -24694.777507 eV Core-core repulsion = 21191.395249 eV Total energy + Delta-G solvation = -3503.382258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.20383 -40.49441 -38.50569 -37.28187 -34.57389 -33.97102 -33.15117 -32.94591 -31.80462 -29.58900 -27.56804 -27.22015 -24.61562 -23.49929 -22.89076 -22.60237 -21.47714 -20.46213 -19.72736 -18.83814 -18.07998 -17.27128 -16.41270 -16.38941 -16.25090 -15.68883 -15.53701 -15.26469 -15.05608 -14.87327 -14.55100 -14.41302 -14.19236 -14.02558 -13.85161 -13.69934 -13.55149 -13.23577 -13.01126 -12.63150 -12.50271 -12.35125 -12.22118 -12.21237 -12.12745 -11.85807 -11.73541 -11.56413 -11.23243 -10.92044 -10.54178 -10.33028 -9.91336 -9.48063 -8.52724 -8.47871 -6.15743 0.03949 0.73124 1.16213 1.32665 1.46646 1.49938 2.17087 2.48413 2.58793 2.87621 3.21918 3.53731 3.73071 4.03088 4.07428 4.10646 4.16400 4.17797 4.22782 4.35285 4.51503 4.56060 4.57164 4.62379 4.74295 4.78296 4.94321 5.02951 5.04381 5.07054 5.10504 5.12264 5.15978 5.23898 5.29603 5.30092 5.42069 5.47864 5.50103 5.69548 5.73823 5.76900 5.87734 6.02644 6.26738 6.84934 6.95391 7.59773 7.78073 8.74733 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.003416 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.071092 B = 8193.569821 C = 8661.527839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.143 3.857 4 C -0.125 4.125 5 C -0.140 4.140 6 N -0.709 5.709 7 C 0.524 3.476 8 O -0.556 6.556 9 C -0.229 4.229 10 C -0.001 4.001 11 C -0.156 4.156 12 C 0.018 3.982 13 C -0.221 4.221 14 C 0.127 3.873 15 O -0.232 6.232 16 C -0.417 4.417 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.021 2.979 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.259 4.259 25 C -0.049 4.049 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.412 0.588 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.273 0.727 43 H 0.118 0.882 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -18.714 -18.063 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.038 3.962 4 C -0.163 4.163 5 C -0.198 4.198 6 N -0.362 5.362 7 C 0.314 3.686 8 O -0.436 6.436 9 C -0.250 4.250 10 C -0.020 4.020 11 C -0.156 4.156 12 C 0.000 4.000 13 C -0.241 4.241 14 C 0.076 3.924 15 O -0.139 6.139 16 C -0.493 4.493 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.840 3.160 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.278 4.278 25 C -0.067 4.067 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.249 0.751 38 H 0.188 0.812 39 H 0.182 0.818 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.963 -18.275 -16.923 25.221 hybrid contribution 0.173 0.685 0.668 0.973 sum 4.136 -17.590 -16.255 24.305 Atomic orbital electron populations 1.21768 0.95592 1.02144 1.01493 1.21759 0.96168 0.93569 1.04270 1.21006 0.94297 0.93978 0.86938 1.21914 0.95195 0.96162 1.03046 1.21720 0.99540 0.97515 1.00976 1.45883 1.70257 1.06322 1.13709 1.18983 0.77481 0.82648 0.89477 1.91022 1.50703 1.64135 1.37749 1.23117 1.08021 0.95850 0.98003 1.22528 0.89932 0.93498 0.96048 1.18840 1.04807 0.95857 0.96132 1.20627 0.93792 0.95281 0.90285 1.20167 1.09107 0.94655 1.00162 1.20000 0.93898 0.91873 0.86627 1.83872 1.62264 1.35212 1.32506 1.21846 1.29265 0.98136 1.00021 0.88100 1.26669 0.98393 1.03678 0.93368 1.70169 1.41386 1.41234 1.03126 0.84627 0.78030 0.74896 0.78491 1.17794 1.19381 1.18325 1.21068 1.08427 1.02934 0.95399 1.21162 0.96458 0.93161 0.95903 0.94597 0.92388 0.91217 0.89121 0.89972 0.93125 0.90502 0.90034 0.95665 0.93272 0.93747 0.75075 0.81172 0.81750 0.86368 0.88356 0.91767 0.86396 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.80 71.98 0.71 -1.38 16 2 C -0.12 -1.48 5.47 30.60 0.17 -1.31 16 3 C 0.14 2.77 2.26 44.99 0.10 2.87 16 4 C -0.12 -2.40 5.61 30.59 0.17 -2.23 16 5 C -0.14 -3.88 8.51 71.98 0.61 -3.27 16 6 N -0.71 -12.53 4.48 -446.92 -2.00 -14.54 16 7 C 0.52 13.25 5.34 86.32 0.46 13.71 16 8 O -0.56 -20.25 9.31 -4.40 -0.04 -20.29 16 9 C -0.23 -4.40 9.90 23.62 0.23 -4.16 16 10 C 0.00 -0.02 9.80 23.82 0.23 0.22 16 11 C -0.16 -5.41 4.54 -20.13 -0.09 -5.50 16 12 C 0.02 0.74 6.59 22.55 0.15 0.89 16 13 C -0.22 -10.96 9.97 22.35 0.22 -10.74 16 14 C 0.13 7.00 6.66 22.72 0.15 7.15 16 15 O -0.23 -15.09 9.74 -20.28 -0.20 -15.29 16 16 C -0.42 -25.78 9.48 67.94 0.64 -25.14 16 17 H 0.10 5.74 5.18 -2.91 -0.02 5.72 16 18 C -0.02 -1.41 5.49 84.86 0.47 -0.95 16 19 N -0.92 -59.05 13.67 21.62 0.30 -58.76 16 20 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.26 -12.39 9.14 22.34 0.20 -12.19 16 25 C -0.05 -1.85 9.78 22.55 0.22 -1.63 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.76 7.75 -2.39 -0.02 0.75 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.02 0.86 7.84 -2.38 -0.02 0.84 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.35 5.64 -2.39 -0.01 1.33 16 37 H 0.41 4.19 8.58 -92.71 -0.80 3.39 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.12 4.22 7.02 -2.91 -0.02 4.20 16 41 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.12 5.66 5.62 -2.91 -0.02 5.64 16 44 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -82.54 359.19 4.94 -77.60 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.20 Total: 28.18 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 4.65 Total: -43.66 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.71 Total: -73.29 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.24 Total: -35.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -82.54 4.94 -77.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255543492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.473 kcal (2) G-P(sol) polarization free energy of solvation -82.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds