Wall clock time and date at job start Tue Mar 31 2020 10:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33406 * 120.00175 * 2 1 4 4 C 1.46331 * 119.99927 * 359.97438 * 3 2 1 5 5 C 1.35182 * 119.99874 * 180.02562 * 4 3 2 6 6 C 1.46264 * 120.00089 * 179.97438 * 5 4 3 7 7 O 1.21726 * 119.99778 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00335 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46830 * 90.00026 * 9 8 6 11 11 H 1.08005 * 120.00123 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00104 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00153 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47143 * 90.00238 * 14 12 10 16 16 H 1.48500 * 109.47096 * 210.00015 * 14 12 10 17 17 H 1.48498 * 109.47046 * 329.99882 * 14 12 10 18 18 C 1.46499 * 119.99852 * 0.02562 * 8 6 5 19 19 C 1.50696 * 109.47495 * 89.99547 * 18 8 6 20 20 C 1.34519 * 125.78484 * 89.99784 * 19 18 8 21 21 C 1.41383 * 106.83725 * 180.02562 * 20 19 18 22 22 C 1.34514 * 106.84420 * 0.02562 * 21 20 19 23 23 O 1.34297 * 125.79386 * 269.69426 * 19 18 8 24 24 C 1.50698 * 119.99655 * 179.97438 * 3 2 1 25 25 C 1.53006 * 109.47184 * 95.00064 * 24 3 2 26 26 H 1.08996 * 109.47235 * 60.00295 * 1 2 3 27 27 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47476 * 300.00147 * 1 2 3 29 29 H 1.08008 * 119.99917 * 179.97438 * 2 1 3 30 30 H 1.08003 * 120.00273 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00125 * 0.02562 * 5 4 3 32 32 H 1.08997 * 109.47800 * 209.99956 * 9 8 6 33 33 H 1.09001 * 109.47019 * 330.00828 * 9 8 6 34 34 H 0.97001 * 120.00471 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46939 * 209.99945 * 18 8 6 36 36 H 1.09006 * 109.47268 * 329.99679 * 18 8 6 37 37 H 1.08002 * 126.58415 * 0.04091 * 20 19 18 38 38 H 1.08002 * 126.57685 * 179.97438 * 21 20 19 39 39 H 1.07998 * 125.78846 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47612 * 335.00118 * 24 3 2 41 41 H 1.09001 * 109.47122 * 214.99950 * 24 3 2 42 42 H 1.09001 * 109.47002 * 299.99404 * 25 24 3 43 43 H 1.08993 * 109.46955 * 59.99842 * 25 24 3 44 44 H 1.09000 * 109.47050 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 1.4424 2.4226 -0.0006 5 6 2.1183 3.5933 -0.0011 6 6 1.3871 4.8600 -0.0022 7 8 0.1698 4.8600 -0.0032 8 7 2.0610 6.0271 -0.0033 9 6 1.3286 7.2959 -0.0050 10 6 1.0769 7.7325 1.4153 11 1 1.4279 7.1257 2.2370 12 6 0.3987 8.9065 1.6657 13 7 0.1795 9.2878 2.9051 14 14 -0.2089 9.9555 0.2445 15 1 -1.5822 9.5330 -0.1309 16 1 -0.2249 11.3828 0.6542 17 1 0.6972 9.7848 -0.9195 18 6 3.5260 6.0271 -0.0038 19 6 4.0278 6.0260 -1.4248 20 6 4.2898 7.1167 -2.1673 21 6 4.7345 6.6566 -3.4280 22 6 4.7172 5.3124 -3.3808 23 8 4.2948 4.9361 -2.1626 24 6 3.6810 1.1552 0.0006 25 6 4.1916 1.2805 -1.4363 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.0470 -0.9354 0.0004 30 1 0.3624 2.4227 -0.0006 31 1 3.1983 3.5933 -0.0015 32 1 1.9178 8.0550 -0.5194 33 1 0.3763 7.1650 -0.5189 34 1 -0.2980 10.1135 3.0814 35 1 3.8895 6.9174 0.5092 36 1 3.8895 5.1374 0.5105 37 1 4.1814 8.1462 -1.8594 38 1 5.0305 7.2674 -4.2682 39 1 5.0008 4.6485 -4.1840 40 1 4.0442 0.2239 0.4352 41 1 4.0442 1.9971 0.5900 42 1 3.8285 0.4386 -2.0257 43 1 3.8285 2.2118 -1.8709 44 1 5.2816 1.2809 -1.4358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268817513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:56 Heat of formation + Delta-G solvation = 7.410992 kcal Electronic energy + Delta-G solvation = -24965.098171 eV Core-core repulsion = 21464.037434 eV Total energy + Delta-G solvation = -3501.060736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38144 -39.20317 -37.32274 -35.30346 -32.84416 -32.70507 -32.18758 -31.58606 -30.30087 -28.24511 -26.80877 -25.54285 -23.78117 -22.67144 -21.59374 -21.37379 -20.53079 -18.56293 -17.80482 -17.33130 -16.90243 -16.54529 -15.79945 -15.57936 -14.93167 -14.77179 -14.50083 -14.10272 -13.66457 -13.57237 -13.28057 -12.93728 -12.83032 -12.75120 -12.67446 -12.56799 -12.30120 -12.25544 -12.18699 -11.70792 -11.54053 -11.43024 -11.02801 -10.92831 -10.65529 -10.54522 -10.26984 -10.13296 -9.76853 -9.56882 -9.12849 -8.59567 -8.38135 -8.19414 -7.80900 -6.09298 -4.08358 0.97906 1.83989 2.71200 2.76142 3.14696 3.29265 3.35335 3.37803 3.86362 4.01925 4.39363 4.67185 4.74819 4.87498 5.06563 5.08612 5.17755 5.18409 5.24291 5.29913 5.32335 5.38799 5.47899 5.53593 5.61531 5.65366 5.84043 5.87757 5.90704 5.93727 5.96866 6.09851 6.17563 6.24982 6.26365 6.45442 6.56409 6.64409 6.76171 6.87987 6.96342 7.21948 7.34187 7.59295 8.15944 8.45391 8.90162 8.96059 9.50792 11.03884 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.005103 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.029024 B = 5485.639408 C = 7283.314236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C -0.110 4.110 4 C -0.049 4.049 5 C -0.193 4.193 6 C 0.541 3.459 7 O -0.538 6.538 8 N -0.584 5.584 9 C 0.216 3.784 10 C -0.529 4.529 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.896 5.896 14 Si 0.874 3.126 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.190 3.810 19 C -0.025 4.025 20 C -0.198 4.198 21 C -0.214 4.214 22 C -0.048 4.048 23 O -0.172 6.172 24 C -0.087 4.087 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.197 0.803 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -14.847 -10.552 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.110 4.110 4 C -0.068 4.068 5 C -0.214 4.214 6 C 0.331 3.669 7 O -0.416 6.416 8 N -0.314 5.314 9 C 0.096 3.904 10 C -0.568 4.568 11 H 0.094 0.906 12 C -0.128 4.128 13 N -0.534 5.534 14 Si 0.700 3.300 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.190 1.190 18 C 0.066 3.934 19 C -0.076 4.076 20 C -0.218 4.218 21 C -0.234 4.234 22 C -0.116 4.116 23 O -0.068 6.068 24 C -0.125 4.125 25 C -0.205 4.205 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.214 0.786 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.190 -14.947 -10.318 20.826 hybrid contribution -0.194 0.962 -0.883 1.320 sum 9.996 -13.985 -11.201 20.518 Atomic orbital electron populations 1.20911 0.92925 1.02182 1.02707 1.23433 0.96151 0.96882 0.98946 1.20552 0.95163 0.92777 1.02496 1.22392 1.00085 0.90954 0.93415 1.23306 1.00379 0.92816 1.04902 1.18244 0.87428 0.84113 0.77136 1.90780 1.13570 1.87436 1.49858 1.47852 1.04583 1.07601 1.71397 1.19700 0.92445 0.79783 0.98460 1.21316 1.37182 1.07160 0.91133 0.90560 1.24826 0.95175 0.97296 0.95503 1.69888 1.41354 1.23536 1.18660 0.86889 0.80245 0.79791 0.83038 1.19900 1.21030 1.19007 1.19939 0.81718 1.05231 0.86532 1.23297 1.03732 0.84261 0.96323 1.21689 1.05996 0.99860 0.94241 1.21810 1.07487 0.94830 0.99236 1.23930 1.04709 0.96022 0.86983 1.84015 1.65124 1.35149 1.22467 1.20550 0.91451 1.02504 0.97961 1.21755 1.00447 1.02467 0.95814 0.91246 0.92137 0.91034 0.86835 0.85133 0.85498 0.95101 0.94448 0.92532 0.86383 0.89348 0.83382 0.83823 0.78597 0.91369 0.90926 0.92953 0.91831 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.75 36.00 0.32 -0.98 16 2 C -0.14 -1.40 9.96 -36.00 -0.36 -1.75 16 3 C -0.11 -1.30 5.23 -103.06 -0.54 -1.84 16 4 C -0.05 -0.73 8.88 -37.42 -0.33 -1.06 16 5 C -0.19 -3.19 8.48 -37.45 -0.32 -3.51 16 6 C 0.54 11.58 7.60 -13.04 -0.10 11.48 16 7 O -0.54 -13.67 15.81 5.17 0.08 -13.59 16 8 N -0.58 -12.25 2.44 -178.14 -0.43 -12.69 16 9 C 0.22 5.31 4.23 -5.20 -0.02 5.29 16 10 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 11 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 12 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 14 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 18 C 0.19 3.09 5.65 -5.20 -0.03 3.06 16 19 C -0.02 -0.38 6.90 -35.63 -0.25 -0.62 16 20 C -0.20 -2.94 10.81 -39.70 -0.43 -3.37 16 21 C -0.21 -2.71 10.91 -39.70 -0.43 -3.14 16 22 C -0.05 -0.57 12.09 29.42 0.36 -0.21 16 23 O -0.17 -2.42 10.65 5.72 0.06 -2.36 16 24 C -0.09 -0.88 5.43 -27.88 -0.15 -1.03 16 25 C -0.15 -1.41 9.90 37.16 0.37 -1.04 16 26 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 29 H 0.11 0.95 8.03 -52.48 -0.42 0.52 16 30 H 0.13 2.11 6.21 -52.48 -0.33 1.78 16 31 H 0.13 1.80 4.46 -52.49 -0.23 1.56 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 1.00 6.84 -51.93 -0.36 0.64 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.12 1.86 8.07 -51.93 -0.42 1.44 16 36 H 0.09 1.22 6.09 -51.93 -0.32 0.91 16 37 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.20 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 41 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -34.20 371.76 -7.52 -41.72 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.58 Total: 3.20 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.36 Total: -12.09 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.34 Total: -39.39 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.14 Total: -15.94 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.20 -7.52 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268817513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.132 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds