Wall clock time and date at job start Tue Mar 31 2020 10:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33406 * 120.00175 * 2 1 4 4 C 1.46331 * 119.99927 * 359.97438 * 3 2 1 5 5 C 1.35182 * 119.99874 * 180.02562 * 4 3 2 6 6 C 1.46264 * 120.00089 * 179.97438 * 5 4 3 7 7 O 1.21726 * 119.99778 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00235 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00335 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.46830 * 90.00026 * 9 8 6 11 11 H 1.08005 * 120.00123 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00104 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00153 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47143 * 90.00238 * 14 12 10 16 16 H 1.48500 * 109.47096 * 210.00015 * 14 12 10 17 17 H 1.48498 * 109.47046 * 329.99882 * 14 12 10 18 18 C 1.46499 * 119.99852 * 0.02562 * 8 6 5 19 19 C 1.50696 * 109.47495 * 89.99547 * 18 8 6 20 20 C 1.34519 * 125.78484 * 89.99784 * 19 18 8 21 21 C 1.41383 * 106.83725 * 180.02562 * 20 19 18 22 22 C 1.34514 * 106.84420 * 0.02562 * 21 20 19 23 23 O 1.34297 * 125.79386 * 269.69426 * 19 18 8 24 24 C 1.50698 * 119.99655 * 179.97438 * 3 2 1 25 25 C 1.53006 * 109.47184 * 95.00064 * 24 3 2 26 26 H 1.08996 * 109.47235 * 60.00295 * 1 2 3 27 27 H 1.09000 * 109.47554 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47476 * 300.00147 * 1 2 3 29 29 H 1.08008 * 119.99917 * 179.97438 * 2 1 3 30 30 H 1.08003 * 120.00273 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00125 * 0.02562 * 5 4 3 32 32 H 1.08997 * 109.47800 * 209.99956 * 9 8 6 33 33 H 1.09001 * 109.47019 * 330.00828 * 9 8 6 34 34 H 0.97001 * 120.00471 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.46939 * 209.99945 * 18 8 6 36 36 H 1.09006 * 109.47268 * 329.99679 * 18 8 6 37 37 H 1.08002 * 126.58415 * 0.04091 * 20 19 18 38 38 H 1.08002 * 126.57685 * 179.97438 * 21 20 19 39 39 H 1.07998 * 125.78846 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47612 * 335.00118 * 24 3 2 41 41 H 1.09001 * 109.47122 * 214.99950 * 24 3 2 42 42 H 1.09001 * 109.47002 * 299.99404 * 25 24 3 43 43 H 1.08993 * 109.46955 * 59.99842 * 25 24 3 44 44 H 1.09000 * 109.47050 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1740 1.1553 0.0000 4 6 1.4424 2.4226 -0.0006 5 6 2.1183 3.5933 -0.0011 6 6 1.3871 4.8600 -0.0022 7 8 0.1698 4.8600 -0.0032 8 7 2.0610 6.0271 -0.0033 9 6 1.3286 7.2959 -0.0050 10 6 1.0769 7.7325 1.4153 11 1 1.4279 7.1257 2.2370 12 6 0.3987 8.9065 1.6657 13 7 0.1795 9.2878 2.9051 14 14 -0.2089 9.9555 0.2445 15 1 -1.5822 9.5330 -0.1309 16 1 -0.2249 11.3828 0.6542 17 1 0.6972 9.7848 -0.9195 18 6 3.5260 6.0271 -0.0038 19 6 4.0278 6.0260 -1.4248 20 6 4.2898 7.1167 -2.1673 21 6 4.7345 6.6566 -3.4280 22 6 4.7172 5.3124 -3.3808 23 8 4.2948 4.9361 -2.1626 24 6 3.6810 1.1552 0.0006 25 6 4.1916 1.2805 -1.4363 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.0470 -0.9354 0.0004 30 1 0.3624 2.4227 -0.0006 31 1 3.1983 3.5933 -0.0015 32 1 1.9178 8.0550 -0.5194 33 1 0.3763 7.1650 -0.5189 34 1 -0.2980 10.1135 3.0814 35 1 3.8895 6.9174 0.5092 36 1 3.8895 5.1374 0.5105 37 1 4.1814 8.1462 -1.8594 38 1 5.0305 7.2674 -4.2682 39 1 5.0008 4.6485 -4.1840 40 1 4.0442 0.2239 0.4352 41 1 4.0442 1.9971 0.5900 42 1 3.8285 0.4386 -2.0257 43 1 3.8285 2.2118 -1.8709 44 1 5.2816 1.2809 -1.4358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268817513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:55 Heat of formation + Delta-G solvation = -12.597045 kcal Electronic energy + Delta-G solvation = -24965.965784 eV Core-core repulsion = 21464.037434 eV Total energy + Delta-G solvation = -3501.928350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.42368 -40.80277 -38.32240 -36.96751 -34.86050 -33.83822 -33.09630 -32.79568 -31.67731 -29.97271 -27.77571 -26.83328 -25.43222 -23.49880 -22.99714 -22.58730 -21.63693 -19.97618 -19.18856 -18.99824 -18.31514 -17.83242 -17.26572 -16.73895 -16.38416 -16.06865 -15.78327 -15.51033 -15.05733 -14.71476 -14.51008 -14.32585 -14.10821 -13.86916 -13.72121 -13.67898 -13.63615 -13.56706 -13.26226 -13.11678 -12.98909 -12.64137 -12.48101 -12.33008 -12.10789 -11.77321 -11.72777 -11.58865 -11.29699 -10.85627 -10.83294 -10.78262 -9.72572 -9.39140 -9.13184 -8.35075 -6.40160 -0.18052 0.76585 1.30784 1.34652 1.43073 1.58334 1.71128 2.11359 2.29228 2.34950 2.55798 2.98888 3.60257 3.78393 3.82336 3.99773 4.09033 4.18252 4.22128 4.36644 4.39027 4.48567 4.55944 4.59290 4.66200 4.71138 4.77535 4.83303 4.87548 4.95107 5.05847 5.09036 5.12335 5.16445 5.21972 5.26022 5.37377 5.41996 5.48456 5.53677 5.65295 5.70719 5.91336 6.21419 6.25496 6.55295 6.61174 7.18099 7.32017 8.81634 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.005103 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.029024 B = 5485.639408 C = 7283.314236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.137 4.137 4 C -0.024 4.024 5 C -0.216 4.216 6 C 0.531 3.469 7 O -0.596 6.596 8 N -0.590 5.590 9 C 0.228 3.772 10 C -0.535 4.535 11 H 0.033 0.967 12 C 0.017 3.983 13 N -0.942 5.942 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.271 1.271 17 H -0.241 1.241 18 C 0.189 3.811 19 C -0.045 4.045 20 C -0.209 4.209 21 C -0.228 4.228 22 C -0.034 4.034 23 O -0.178 6.178 24 C -0.085 4.085 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.151 0.849 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.240 0.760 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.803 -16.831 -13.034 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.137 4.137 4 C -0.044 4.044 5 C -0.236 4.236 6 C 0.324 3.676 7 O -0.480 6.480 8 N -0.319 5.319 9 C 0.106 3.894 10 C -0.574 4.574 11 H 0.052 0.948 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.765 3.235 15 H -0.204 1.204 16 H -0.196 1.196 17 H -0.164 1.164 18 C 0.066 3.934 19 C -0.096 4.096 20 C -0.229 4.229 21 C -0.247 4.247 22 C -0.101 4.101 23 O -0.073 6.073 24 C -0.122 4.122 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.130 0.870 31 H 0.169 0.831 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.256 0.744 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.085 -16.939 -12.805 24.432 hybrid contribution -0.793 1.361 -0.086 1.577 sum 11.292 -15.578 -12.891 23.160 Atomic orbital electron populations 1.21016 0.93113 1.03597 1.01858 1.23836 0.96238 0.97554 0.94599 1.20606 0.96351 0.91460 1.05264 1.22585 0.99474 0.92325 0.90049 1.23039 1.01029 0.90637 1.08892 1.19070 0.87110 0.85648 0.75766 1.90728 1.16002 1.88327 1.52917 1.47885 1.06595 1.06337 1.71110 1.19319 0.92372 0.82022 0.95639 1.21500 1.37011 1.06784 0.92072 0.94825 1.25755 0.95197 0.98780 0.98423 1.70030 1.42527 1.24457 1.21130 0.85799 0.79545 0.78083 0.80073 1.20356 1.19633 1.16405 1.20044 0.78826 1.06288 0.88217 1.22880 1.05728 0.84973 0.96066 1.21927 1.05798 0.99724 0.95441 1.22120 1.07916 0.95628 0.99058 1.24813 1.02139 0.96635 0.86539 1.84009 1.65282 1.34725 1.23329 1.20569 0.89828 1.03376 0.98406 1.21726 1.01273 1.01771 0.95356 0.91926 0.89615 0.92133 0.83598 0.87043 0.83141 0.93272 0.96681 0.92178 0.86543 0.87176 0.83678 0.81475 0.74384 0.89170 0.91645 0.92225 0.93679 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.75 71.23 0.62 -1.87 16 2 C -0.10 -1.81 9.96 24.59 0.24 -1.57 16 3 C -0.14 -2.97 5.23 -18.85 -0.10 -3.06 16 4 C -0.02 -0.74 8.88 23.67 0.21 -0.53 16 5 C -0.22 -7.25 8.48 23.65 0.20 -7.05 16 6 C 0.53 23.86 7.60 86.33 0.66 24.51 16 7 O -0.60 -32.26 15.81 -4.43 -0.07 -32.34 16 8 N -0.59 -25.73 2.44 -835.72 -2.04 -27.77 16 9 C 0.23 11.59 4.23 85.63 0.36 11.95 16 10 C -0.54 -31.97 9.94 25.60 0.25 -31.71 16 11 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 12 C 0.02 1.01 5.47 84.66 0.46 1.47 16 13 N -0.94 -59.83 13.96 21.45 0.30 -59.53 16 14 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 15 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 18 C 0.19 6.24 5.65 85.63 0.48 6.73 16 19 C -0.05 -1.36 6.90 24.83 0.17 -1.18 16 20 C -0.21 -5.98 10.81 22.19 0.24 -5.74 16 21 C -0.23 -5.19 10.91 22.19 0.24 -4.95 16 22 C -0.03 -0.69 12.09 66.97 0.81 0.12 16 23 O -0.18 -4.67 10.65 -2.46 -0.03 -4.70 16 24 C -0.08 -1.47 5.43 29.85 0.16 -1.31 16 25 C -0.14 -2.32 9.90 71.98 0.71 -1.60 16 26 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.25 7.93 -2.38 -0.02 1.23 16 29 H 0.15 1.68 8.03 -2.91 -0.02 1.66 16 30 H 0.11 3.76 6.21 -2.91 -0.02 3.74 16 31 H 0.15 4.22 4.46 -2.91 -0.01 4.20 16 32 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 33 H 0.02 0.83 6.84 -2.39 -0.02 0.82 16 34 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.12 3.80 8.07 -2.39 -0.02 3.78 16 36 H 0.11 3.07 6.09 -2.38 -0.01 3.05 16 37 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 38 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.24 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.09 1.18 8.01 -2.39 -0.02 1.16 16 41 H 0.06 1.23 6.70 -2.39 -0.02 1.22 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.19 371.76 6.71 -72.47 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.93 Total: 20.57 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 5.74 Total: -15.79 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -1.74 Total: -87.30 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.10 Total: -37.03 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -79.19 6.71 -72.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268817513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.877 kcal (2) G-P(sol) polarization free energy of solvation -79.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds