Wall clock time and date at job start Tue Mar 31 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.54709 * 2 1 4 4 N 1.46501 * 109.47157 * 59.99255 * 3 2 1 5 5 C 1.34780 * 120.00006 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99973 * 0.02562 * 5 4 3 7 7 C 1.47645 * 120.00032 * 180.02562 * 5 4 3 8 8 C 1.40011 * 119.89399 * 180.02562 * 7 5 4 9 9 C 1.36312 * 120.10429 * 179.74588 * 8 7 5 10 10 C 1.40891 * 119.89271 * 0.25194 * 9 8 7 11 11 C 1.41117 * 120.10336 * 180.02562 * 10 9 8 12 12 H 1.07995 * 119.99917 * 204.63206 * 11 10 9 13 13 C 1.40225 * 119.99767 * 24.63907 * 11 10 9 14 14 N 1.30650 * 120.00211 * 17.88343 * 13 11 10 15 15 Si 1.86794 * 120.00050 * 197.88341 * 13 11 10 16 16 H 1.48503 * 109.46940 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47270 * 119.99827 * 15 13 11 18 18 H 1.48500 * 109.47495 * 240.00031 * 15 13 11 19 19 C 1.40885 * 119.79314 * 0.02562 * 10 9 8 20 20 C 1.36314 * 119.89124 * 359.97438 * 19 10 9 21 21 C 1.53183 * 109.53851 * 120.17355 * 2 1 3 22 22 C 1.53110 * 109.15641 * 63.06684 * 21 2 1 23 23 O 1.42903 * 109.48876 * 57.47343 * 22 21 2 24 24 C 1.42908 * 114.09543 * 298.88695 * 23 22 21 25 25 C 1.53093 * 109.41418 * 61.16056 * 24 23 22 26 26 H 1.09001 * 109.46665 * 60.00122 * 1 2 3 27 27 H 1.09001 * 109.47677 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47443 * 300.00569 * 1 2 3 29 29 H 1.09006 * 109.46836 * 299.99651 * 3 2 1 30 30 H 1.08999 * 109.47490 * 179.97438 * 3 2 1 31 31 H 0.97004 * 120.00168 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.94896 * 0.02562 * 8 7 5 33 33 H 1.08001 * 120.05429 * 180.27882 * 9 8 7 34 34 H 0.97002 * 120.00128 * 179.97438 * 14 13 11 35 35 H 1.08000 * 120.05158 * 180.02562 * 19 10 9 36 36 H 1.07998 * 119.94696 * 180.02562 * 20 19 10 37 37 H 1.08999 * 109.51906 * 182.87569 * 21 2 1 38 38 H 1.08997 * 109.52510 * 303.06729 * 21 2 1 39 39 H 1.09001 * 109.40439 * 297.49013 * 22 21 2 40 40 H 1.09001 * 109.49099 * 177.50895 * 22 21 2 41 41 H 1.08998 * 109.48049 * 301.17779 * 24 23 22 42 42 H 1.08996 * 109.49193 * 181.14424 * 24 23 22 43 43 H 1.09002 * 109.52323 * 182.48155 * 25 24 23 44 44 H 1.09001 * 109.57325 * 62.32414 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 7 1.5543 2.1331 1.1961 5 6 1.8820 3.4229 1.4096 6 8 2.5819 4.0128 0.6094 7 6 1.3911 4.1194 2.6153 8 6 1.7325 5.4595 2.8347 9 6 1.2773 6.1082 3.9437 10 6 0.4666 5.4266 4.8728 11 6 -0.0075 6.0941 6.0222 12 1 -0.2707 5.5295 6.9044 13 6 -0.1369 7.4903 6.0187 14 7 -0.1627 8.1412 4.8862 15 14 -0.2723 8.4198 7.6333 16 1 -0.2170 7.4585 8.7639 17 1 0.8533 9.3818 7.7467 18 1 -1.5602 9.1579 7.6731 19 6 0.1306 4.0765 4.6507 20 6 0.5905 3.4361 3.5386 21 6 2.0423 -0.7256 1.2480 22 6 1.5929 -2.1884 1.1987 23 8 2.0770 -2.7957 -0.0009 24 6 1.5912 -2.1879 -1.1996 25 6 2.0424 -0.7258 -1.2478 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6792 1.9560 -0.8901 30 1 3.1318 1.4404 0.0005 31 1 0.9962 1.6623 1.8348 32 1 2.3536 5.9812 2.1218 33 1 1.5374 7.1432 4.1098 34 1 -0.2526 9.1071 4.8838 35 1 -0.4909 3.5501 5.3599 36 1 0.3332 2.4014 3.3673 37 1 3.1310 -0.6811 1.2740 38 1 1.6359 -0.2481 2.1396 39 1 0.5040 -2.2335 1.2151 40 1 1.9918 -2.7208 2.0622 41 1 0.5023 -2.2330 -1.2145 42 1 1.9890 -2.7196 -2.0640 43 1 1.6361 -0.2484 -2.1395 44 1 3.1311 -0.6802 -1.2743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270343287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:49 Heat of formation + Delta-G solvation = -85.085247 kcal Electronic energy + Delta-G solvation = -24437.721249 eV Core-core repulsion = 20932.649575 eV Total energy + Delta-G solvation = -3505.071674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 6.86 seconds Orbital eigenvalues (eV) -40.36790 -38.90203 -37.17896 -35.99605 -33.90260 -33.00367 -31.35031 -30.18285 -29.56614 -28.08636 -27.16808 -25.58090 -23.88555 -22.94490 -21.77779 -20.79223 -19.64495 -18.83209 -17.55481 -17.19486 -16.24123 -16.02115 -15.55323 -15.33094 -15.29490 -14.88086 -14.27023 -14.16716 -13.98545 -13.66404 -13.37765 -13.16665 -12.70314 -12.60553 -12.28527 -12.21833 -12.14090 -11.87018 -11.55982 -11.50787 -11.38360 -11.25494 -11.20352 -10.96812 -10.67123 -10.61378 -10.41807 -10.06047 -9.63343 -9.55595 -9.34399 -8.98341 -8.58939 -7.71324 -7.57698 -7.03101 -4.61191 2.22850 2.89505 2.95062 3.00338 3.01896 3.64915 3.73628 3.78025 3.87614 4.41361 4.45726 4.53558 4.57874 4.80083 4.97534 5.00258 5.07247 5.34722 5.36440 5.41879 5.51908 5.55569 5.61303 5.65381 5.71932 5.84011 5.85020 5.91686 5.95861 5.98619 6.16113 6.22493 6.28368 6.79383 6.82628 6.95429 6.96911 7.05365 7.09560 7.42680 7.60194 7.77590 7.86903 8.04162 8.24277 8.42309 8.62076 8.74495 9.07938 9.88807 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.002727 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.141519 B =10263.805882 C =10790.235300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C 0.136 3.864 4 N -0.740 5.740 5 C 0.570 3.430 6 O -0.574 6.574 7 C -0.283 4.283 8 C -0.036 4.036 9 C -0.183 4.183 10 C 0.128 3.872 11 C -0.443 4.443 12 H 0.085 0.915 13 C 0.073 3.927 14 N -0.769 5.769 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.269 1.269 18 H -0.272 1.272 19 C -0.235 4.235 20 C -0.050 4.050 21 C -0.146 4.146 22 C 0.060 3.940 23 O -0.384 6.384 24 C 0.061 3.939 25 C -0.143 4.143 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.395 0.605 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.287 0.713 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 -14.736 -6.203 15.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 C 0.012 3.988 4 N -0.395 5.395 5 C 0.365 3.635 6 O -0.456 6.456 7 C -0.288 4.288 8 C -0.055 4.055 9 C -0.202 4.202 10 C 0.125 3.875 11 C -0.471 4.471 12 H 0.103 0.897 13 C -0.148 4.148 14 N -0.392 5.392 15 Si 0.736 3.264 16 H -0.181 1.181 17 H -0.193 1.193 18 H -0.197 1.197 19 C -0.254 4.254 20 C -0.069 4.069 21 C -0.184 4.184 22 C -0.017 4.017 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.181 4.181 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.507 -14.237 -6.887 15.824 hybrid contribution -0.624 0.582 0.921 1.255 sum -0.117 -13.655 -5.966 14.902 Atomic orbital electron populations 1.22000 0.93982 1.01778 1.02812 1.20831 0.96234 0.94734 0.95667 1.21182 0.98759 0.89985 0.88875 1.45940 1.55475 1.12865 1.25180 1.18602 0.78735 0.80292 0.85906 1.90637 1.40122 1.66579 1.48229 1.18915 1.14747 0.96361 0.98739 1.20480 0.96382 0.92477 0.96196 1.21021 1.01939 1.00707 0.96517 1.17785 0.87228 0.90955 0.91563 1.19863 1.36199 0.91463 0.99526 0.89717 1.26111 0.92175 0.98365 0.98165 1.69758 1.31391 1.10391 1.27640 0.86176 0.78846 0.79632 0.81714 1.18083 1.19350 1.19671 1.20658 1.08092 0.96880 0.99812 1.20330 0.95766 0.96442 0.94319 1.22262 1.02314 0.95852 0.97974 1.22628 0.98441 0.93061 0.87566 1.87925 1.71900 1.56633 1.13832 1.22590 0.98418 0.92846 0.87738 1.22179 1.02185 0.96043 0.97681 0.92057 0.92301 0.92024 0.91991 0.92045 0.76917 0.88201 0.86152 0.90201 0.88520 0.89506 0.90667 0.90519 0.92911 0.88889 0.92933 0.88984 0.90505 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.76 37.16 0.29 -1.11 16 2 C -0.07 -0.75 0.53 -154.33 -0.08 -0.83 16 3 C 0.14 1.86 4.57 -4.04 -0.02 1.84 16 4 N -0.74 -11.92 4.93 -61.31 -0.30 -12.22 16 5 C 0.57 12.11 7.76 -12.42 -0.10 12.01 16 6 O -0.57 -13.91 16.32 5.29 0.09 -13.83 16 7 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 8 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 9 C -0.18 -4.67 8.64 -39.27 -0.34 -5.01 16 10 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 11 C -0.44 -10.96 9.04 -37.74 -0.34 -11.30 16 12 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 13 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 14 N -0.77 -18.77 10.95 55.56 0.61 -18.16 16 15 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 18 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 19 C -0.23 -5.38 9.73 -39.27 -0.38 -5.76 16 20 C -0.05 -1.04 9.47 -39.61 -0.38 -1.42 16 21 C -0.15 -1.45 4.70 -26.58 -0.13 -1.58 16 22 C 0.06 0.54 6.57 37.21 0.24 0.78 16 23 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 24 C 0.06 0.51 6.57 37.21 0.24 0.75 16 25 C -0.14 -1.26 4.92 -26.59 -0.13 -1.39 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.48 5.02 -51.93 -0.26 0.22 16 28 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.39 5.59 4.21 -40.82 -0.17 5.42 16 32 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 34 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.09 1.48 6.37 -52.49 -0.33 1.15 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.76 6.98 -51.93 -0.36 0.40 16 39 H 0.05 0.43 6.61 -51.93 -0.34 0.09 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.40 6.60 -51.93 -0.34 0.05 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -28.99 346.12 -8.84 -37.83 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.25 Total: 10.34 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.79 Total: -17.07 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.31 Total: -30.38 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.29 Total: -18.23 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.99 -8.84 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270343287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.250 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.86 seconds