Wall clock time and date at job start Tue Mar 31 2020 09:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47275 * 2 1 4 4 C 1.52998 * 109.46876 * 119.99903 * 2 1 3 5 5 C 1.53006 * 115.55015 * 325.67044 * 4 2 1 6 6 C 1.53082 * 117.49485 * 111.39756 * 4 2 1 7 7 C 1.53001 * 59.98350 * 107.48744 * 6 4 2 8 8 H 1.08998 * 117.49920 * 252.50244 * 7 6 4 9 9 C 1.50702 * 117.50181 * 107.50311 * 7 6 4 10 10 O 1.21289 * 119.99637 * 291.25556 * 9 7 6 11 11 N 1.34773 * 120.00124 * 111.25021 * 9 7 6 12 12 C 1.39916 * 120.00145 * 174.84385 * 11 9 7 13 13 C 1.38961 * 120.03900 * 326.10342 * 12 11 9 14 14 C 1.38155 * 120.07008 * 179.97438 * 13 12 11 15 15 C 1.38164 * 120.14040 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.07077 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.03508 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99961 * 186.07769 * 17 16 15 19 19 H 1.07998 * 119.99781 * 5.39779 * 18 17 16 20 20 C 1.38650 * 120.00064 * 185.39481 * 18 17 16 21 21 N 1.31560 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47404 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47043 * 300.00235 * 22 20 18 25 25 H 1.48503 * 109.46940 * 59.99764 * 22 20 18 26 26 C 1.38720 * 120.03743 * 146.33034 * 12 11 9 27 27 H 1.08997 * 109.47187 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.47292 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47187 * 239.99623 * 2 1 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47273 * 299.99667 * 3 2 1 33 33 H 1.08997 * 109.47321 * 59.99705 * 3 2 1 34 34 H 1.08998 * 109.46595 * 274.32859 * 5 4 2 35 35 H 1.08998 * 109.47137 * 34.33180 * 5 4 2 36 36 H 1.09006 * 109.47034 * 154.33110 * 5 4 2 37 37 H 1.09000 * 117.49186 * 359.97438 * 6 4 2 38 38 H 1.09004 * 117.51064 * 214.96505 * 6 4 2 39 39 H 0.96999 * 119.99410 * 354.84850 * 11 9 7 40 40 H 1.08005 * 119.96676 * 359.95091 * 13 12 11 41 41 H 1.08007 * 119.92841 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.96934 * 179.97438 * 15 14 13 43 43 H 0.97001 * 120.00039 * 359.97438 * 21 20 18 44 44 H 1.08002 * 120.06580 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.1851 -0.5481 2.5064 6 6 2.7426 -2.0668 1.0512 7 6 3.5550 -0.8282 1.4344 8 1 4.1883 -0.3843 0.6664 9 6 4.0910 -0.7553 2.8409 10 8 3.3287 -0.6153 3.7739 11 7 5.4174 -0.8458 3.0622 12 6 5.9247 -0.6704 4.3543 13 6 5.3153 0.2244 5.2254 14 6 5.8153 0.3977 6.5015 15 6 6.9228 -0.3172 6.9157 16 6 7.5366 -1.2133 6.0497 17 8 8.6249 -1.9149 6.4572 18 6 9.2475 -2.6715 5.5309 19 1 8.9297 -2.6324 4.4994 20 6 10.2956 -3.4995 5.9025 21 7 10.6824 -3.5474 7.1591 22 14 11.1577 -4.5482 4.6194 23 1 12.2348 -5.3382 5.2681 24 1 10.1765 -5.4705 3.9934 25 1 11.7466 -3.6700 3.5767 26 6 7.0396 -1.3862 4.7656 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.4777 0.3669 3.0214 35 1 0.1338 -0.4866 2.2252 36 1 1.3350 -1.4013 3.1680 37 1 2.8408 -2.4377 0.0310 38 1 2.5958 -2.8289 1.8165 39 1 6.0202 -1.0324 2.3255 40 1 4.4499 0.7853 4.9044 41 1 5.3401 1.0940 7.1766 42 1 7.3116 -0.1793 7.9138 43 1 10.2345 -3.0031 7.8255 44 1 7.5175 -2.0792 4.0890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274723111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:57 Heat of formation + Delta-G solvation = -26.104455 kcal Electronic energy + Delta-G solvation = -24354.269057 eV Core-core repulsion = 20851.754982 eV Total energy + Delta-G solvation = -3502.514075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.68446 -39.21079 -38.09023 -36.41226 -34.26826 -33.62131 -32.22361 -29.63487 -28.86339 -28.44521 -27.09131 -25.10533 -24.55609 -22.77845 -21.87921 -21.60105 -20.02020 -18.73679 -18.35113 -17.48383 -16.98920 -15.86908 -15.43915 -15.14893 -15.02254 -14.73859 -14.39371 -14.08338 -13.80686 -13.73824 -13.56998 -13.23560 -13.09999 -12.92283 -12.71864 -12.51719 -12.44663 -11.75343 -11.65167 -11.43843 -11.41800 -11.24324 -11.03377 -10.83852 -10.82027 -10.53655 -10.31919 -10.27473 -10.00675 -9.76755 -9.56910 -9.31370 -8.76133 -7.78817 -7.23894 -6.78501 -4.08285 1.88014 2.29946 2.69734 3.15012 3.21184 3.26354 3.42911 3.60217 4.09953 4.34099 4.41189 4.51378 4.60898 4.68188 4.93578 4.96637 5.06002 5.08159 5.16169 5.22063 5.38986 5.47187 5.54481 5.60379 5.64227 5.71192 5.73501 5.78887 5.89107 5.92816 5.98482 6.01893 6.06972 6.07282 6.19517 6.21821 6.46423 6.55082 6.92232 6.93734 7.16229 7.22868 7.51525 7.65429 7.73782 8.32193 8.39004 8.90840 9.59801 10.65892 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.003109 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.763335 B = 9003.632289 C = 9945.397030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.109 4.109 6 C -0.147 4.147 7 C -0.187 4.187 8 H 0.122 0.878 9 C 0.540 3.460 10 O -0.514 6.514 11 N -0.668 5.668 12 C 0.183 3.817 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.204 4.204 16 C 0.171 3.829 17 O -0.201 6.201 18 C -0.472 4.472 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.881 5.881 22 Si 1.095 2.905 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.253 4.253 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.406 0.594 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.282 0.718 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 6.435 -15.555 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.166 4.166 6 C -0.185 4.185 7 C -0.208 4.208 8 H 0.140 0.860 9 C 0.328 3.672 10 O -0.389 6.389 11 N -0.312 5.312 12 C 0.090 3.910 13 C -0.225 4.225 14 C -0.081 4.081 15 C -0.224 4.224 16 C 0.117 3.883 17 O -0.105 6.105 18 C -0.548 4.548 19 H 0.099 0.901 20 C -0.195 4.195 21 N -0.513 5.513 22 Si 0.919 3.081 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.274 4.274 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.241 0.759 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.093 0.907 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.411 5.385 -14.890 22.095 hybrid contribution -0.751 0.972 -0.358 1.279 sum -16.162 6.356 -15.249 23.112 Atomic orbital electron populations 1.21901 0.94663 1.01947 1.01871 1.20689 0.96038 0.95913 0.95137 1.21826 1.01120 0.95605 1.01809 1.21603 0.90547 0.98330 0.97709 1.21476 0.97347 1.03675 0.94090 1.23238 1.01592 0.90741 1.02892 1.22326 0.96273 1.06555 0.95666 0.85979 1.19727 0.81709 0.75960 0.89840 1.90719 1.56362 1.47304 1.44503 1.43494 1.07736 1.70655 1.09274 1.17416 0.94232 0.95107 0.84293 1.20539 1.03804 1.03033 0.95092 1.20521 0.94691 0.97776 0.95153 1.20228 1.00101 1.01752 1.00319 1.18928 0.86780 0.90978 0.91580 1.83708 1.34901 1.53324 1.38567 1.22148 1.17406 1.25125 0.90146 0.90104 1.26520 0.94750 0.97005 1.01268 1.70571 1.40583 1.38497 1.01625 0.83117 0.76312 0.75568 0.73080 1.19748 1.20806 1.20743 1.20829 1.01665 1.06408 0.98523 0.91863 0.92759 0.92475 0.91075 0.92668 0.92693 0.92358 0.91415 0.92571 0.91706 0.87865 0.88141 0.75873 0.86290 0.86566 0.86551 0.90749 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.20 37.16 0.30 -0.71 16 2 C -0.06 -0.46 2.98 -90.62 -0.27 -0.73 16 3 C -0.15 -1.13 9.03 37.15 0.34 -0.79 16 4 C -0.08 -0.79 1.91 -154.46 -0.29 -1.08 16 5 C -0.11 -1.23 7.73 37.16 0.29 -0.94 16 6 C -0.15 -1.39 9.53 -26.69 -0.25 -1.64 16 7 C -0.19 -1.98 5.39 -91.77 -0.49 -2.48 16 8 H 0.12 1.05 7.61 -51.93 -0.39 0.66 16 9 C 0.54 7.95 7.33 -10.99 -0.08 7.87 16 10 O -0.51 -9.04 10.82 5.55 0.06 -8.98 16 11 N -0.67 -10.26 5.34 -9.88 -0.05 -10.31 16 12 C 0.18 3.54 6.26 -83.72 -0.52 3.02 16 13 C -0.20 -3.94 8.65 -39.34 -0.34 -4.28 16 14 C -0.06 -1.19 10.03 -39.64 -0.40 -1.59 16 15 C -0.20 -4.40 9.99 -39.36 -0.39 -4.80 16 16 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 17 O -0.20 -5.67 9.16 0.05 0.00 -5.67 16 18 C -0.47 -13.24 9.44 30.88 0.29 -12.95 16 19 H 0.08 2.12 5.29 -52.49 -0.28 1.84 16 20 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 21 N -0.88 -26.32 13.70 55.48 0.76 -25.56 16 22 Si 1.10 23.49 29.92 -169.99 -5.09 18.40 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.25 -5.58 9.05 -39.21 -0.35 -5.94 16 27 H 0.06 0.46 6.45 -51.93 -0.33 0.12 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.49 7.90 -51.93 -0.41 0.08 16 31 H 0.05 0.44 7.29 -51.93 -0.38 0.06 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.87 7.26 -51.93 -0.38 0.50 16 35 H 0.06 0.52 5.58 -51.93 -0.29 0.23 16 36 H 0.06 0.85 7.02 -51.93 -0.36 0.49 16 37 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 39 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 40 H 0.12 2.23 6.45 -52.48 -0.34 1.89 16 41 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 43 H 0.28 8.64 7.97 -40.82 -0.33 8.31 16 44 H 0.13 2.86 5.71 -52.49 -0.30 2.56 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -32.20 356.06 -7.81 -40.02 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.32 Total: 9.66 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.54 Total: -22.93 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.71 Total: -35.87 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.06 Total: -14.65 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.09 Total: 18.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.20 -7.81 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.913 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds