Wall clock time and date at job start Tue Mar 31 2020 09:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47275 * 2 1 4 4 C 1.52998 * 109.46876 * 119.99903 * 2 1 3 5 5 C 1.53006 * 115.55015 * 325.67044 * 4 2 1 6 6 C 1.53082 * 117.49485 * 111.39756 * 4 2 1 7 7 C 1.53001 * 59.98350 * 107.48744 * 6 4 2 8 8 H 1.08998 * 117.49920 * 252.50244 * 7 6 4 9 9 C 1.50702 * 117.50181 * 107.50311 * 7 6 4 10 10 O 1.21289 * 119.99637 * 291.25556 * 9 7 6 11 11 N 1.34773 * 120.00124 * 111.25021 * 9 7 6 12 12 C 1.39916 * 120.00145 * 174.84385 * 11 9 7 13 13 C 1.38961 * 120.03900 * 326.10342 * 12 11 9 14 14 C 1.38155 * 120.07008 * 179.97438 * 13 12 11 15 15 C 1.38164 * 120.14040 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.07077 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.03508 * 179.97438 * 16 15 14 18 18 C 1.34835 * 116.99961 * 186.07769 * 17 16 15 19 19 H 1.07998 * 119.99781 * 5.39779 * 18 17 16 20 20 C 1.38650 * 120.00064 * 185.39481 * 18 17 16 21 21 N 1.31560 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47404 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47043 * 300.00235 * 22 20 18 25 25 H 1.48503 * 109.46940 * 59.99764 * 22 20 18 26 26 C 1.38720 * 120.03743 * 146.33034 * 12 11 9 27 27 H 1.08997 * 109.47187 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.47292 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47187 * 239.99623 * 2 1 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47273 * 299.99667 * 3 2 1 33 33 H 1.08997 * 109.47321 * 59.99705 * 3 2 1 34 34 H 1.08998 * 109.46595 * 274.32859 * 5 4 2 35 35 H 1.08998 * 109.47137 * 34.33180 * 5 4 2 36 36 H 1.09006 * 109.47034 * 154.33110 * 5 4 2 37 37 H 1.09000 * 117.49186 * 359.97438 * 6 4 2 38 38 H 1.09004 * 117.51064 * 214.96505 * 6 4 2 39 39 H 0.96999 * 119.99410 * 354.84850 * 11 9 7 40 40 H 1.08005 * 119.96676 * 359.95091 * 13 12 11 41 41 H 1.08007 * 119.92841 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.96934 * 179.97438 * 15 14 13 43 43 H 0.97001 * 120.00039 * 359.97438 * 21 20 18 44 44 H 1.08002 * 120.06580 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.1851 -0.5481 2.5064 6 6 2.7426 -2.0668 1.0512 7 6 3.5550 -0.8282 1.4344 8 1 4.1883 -0.3843 0.6664 9 6 4.0910 -0.7553 2.8409 10 8 3.3287 -0.6153 3.7739 11 7 5.4174 -0.8458 3.0622 12 6 5.9247 -0.6704 4.3543 13 6 5.3153 0.2244 5.2254 14 6 5.8153 0.3977 6.5015 15 6 6.9228 -0.3172 6.9157 16 6 7.5366 -1.2133 6.0497 17 8 8.6249 -1.9149 6.4572 18 6 9.2475 -2.6715 5.5309 19 1 8.9297 -2.6324 4.4994 20 6 10.2956 -3.4995 5.9025 21 7 10.6824 -3.5474 7.1591 22 14 11.1577 -4.5482 4.6194 23 1 12.2348 -5.3382 5.2681 24 1 10.1765 -5.4705 3.9934 25 1 11.7466 -3.6700 3.5767 26 6 7.0396 -1.3862 4.7656 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.4777 0.3669 3.0214 35 1 0.1338 -0.4866 2.2252 36 1 1.3350 -1.4013 3.1680 37 1 2.8408 -2.4377 0.0310 38 1 2.5958 -2.8289 1.8165 39 1 6.0202 -1.0324 2.3255 40 1 4.4499 0.7853 4.9044 41 1 5.3401 1.0940 7.1766 42 1 7.3116 -0.1793 7.9138 43 1 10.2345 -3.0031 7.8255 44 1 7.5175 -2.0792 4.0890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274723111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:52 Heat of formation + Delta-G solvation = -44.870668 kcal Electronic energy + Delta-G solvation = -24355.082821 eV Core-core repulsion = 20851.754982 eV Total energy + Delta-G solvation = -3503.327839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.88151 -40.78019 -39.35544 -37.99135 -35.71756 -34.35564 -34.20935 -31.20057 -30.38912 -29.50889 -27.70069 -27.01080 -25.80323 -23.61926 -23.42934 -23.02387 -21.39719 -20.16265 -19.65856 -18.92518 -18.21805 -17.25265 -16.88662 -16.51807 -16.49674 -15.87672 -15.76591 -15.63140 -15.50583 -14.97156 -14.81120 -14.42137 -14.29421 -13.84410 -13.70574 -13.39663 -13.30312 -13.22376 -13.05405 -12.70789 -12.50648 -12.43703 -12.31828 -12.10080 -12.00515 -11.93956 -11.50306 -11.44907 -11.30291 -11.06247 -10.84750 -10.71387 -10.48170 -9.45305 -8.98005 -8.94811 -6.26115 0.29499 0.59172 1.46329 1.48843 1.61905 1.78705 1.94959 2.35524 2.70979 2.83323 3.10912 3.28156 3.49967 3.63798 3.76808 3.95900 4.00689 4.10465 4.23592 4.34187 4.34680 4.42349 4.54156 4.57926 4.66470 4.80110 4.84870 4.86939 4.88972 4.96573 5.01741 5.05363 5.08811 5.17646 5.18411 5.25296 5.31122 5.40303 5.44407 5.47567 5.55968 5.62976 5.64670 5.99901 6.24932 6.42554 6.85053 7.10512 7.59787 8.49810 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020632 B = 0.003109 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.763335 B = 9003.632289 C = 9945.397030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.080 4.080 5 C -0.105 4.105 6 C -0.137 4.137 7 C -0.190 4.190 8 H 0.150 0.850 9 C 0.537 3.463 10 O -0.545 6.545 11 N -0.662 5.662 12 C 0.189 3.811 13 C -0.197 4.197 14 C -0.051 4.051 15 C -0.216 4.216 16 C 0.136 3.864 17 O -0.246 6.246 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.044 4.044 21 N -0.917 5.917 22 Si 1.145 2.855 23 H -0.275 1.275 24 H -0.260 1.260 25 H -0.257 1.257 26 C -0.259 4.259 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.422 0.578 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.260 0.740 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.993 7.026 -19.042 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.204 4.204 4 C -0.081 4.081 5 C -0.162 4.162 6 C -0.174 4.174 7 C -0.211 4.211 8 H 0.168 0.832 9 C 0.326 3.674 10 O -0.422 6.422 11 N -0.308 5.308 12 C 0.095 3.905 13 C -0.217 4.217 14 C -0.069 4.069 15 C -0.235 4.235 16 C 0.086 3.914 17 O -0.154 6.154 18 C -0.563 4.563 19 H 0.110 0.890 20 C -0.240 4.240 21 N -0.551 5.551 22 Si 0.960 3.040 23 H -0.200 1.200 24 H -0.185 1.185 25 H -0.181 1.181 26 C -0.281 4.281 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.259 0.741 40 H 0.149 0.851 41 H 0.173 0.827 42 H 0.139 0.861 43 H 0.069 0.931 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.245 6.014 -18.423 25.942 hybrid contribution -0.520 0.991 0.710 1.325 sum -17.765 7.005 -17.713 26.046 Atomic orbital electron populations 1.21902 0.94134 1.02212 1.02169 1.20715 0.96445 0.95679 0.94431 1.21836 1.01068 0.95664 1.01847 1.21693 0.89528 0.98985 0.97865 1.21387 0.98931 1.01455 0.94446 1.23343 1.00115 0.89944 1.04010 1.22355 0.97137 1.08208 0.93354 0.83222 1.20519 0.80888 0.74545 0.91398 1.90712 1.56949 1.48523 1.46037 1.43541 1.08567 1.70526 1.08124 1.17474 0.93043 0.93919 0.86109 1.20866 1.03513 1.02220 0.95143 1.20938 0.93246 0.97131 0.95618 1.20489 1.00894 1.01706 1.00447 1.19493 0.86933 0.91700 0.93304 1.83688 1.37037 1.55158 1.39471 1.22570 1.17791 1.25066 0.90886 0.89009 1.28407 0.95354 0.97901 1.02347 1.70711 1.41895 1.40038 1.02489 0.82600 0.75674 0.74586 0.71150 1.19997 1.18494 1.18136 1.20860 1.02608 1.06882 0.97727 0.92628 0.91459 0.92230 0.89294 0.92747 0.91311 0.93719 0.93446 0.90819 0.94174 0.84816 0.89727 0.74053 0.85089 0.82654 0.86090 0.93109 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.20 71.98 0.59 -1.00 16 2 C -0.05 -0.65 2.98 -10.80 -0.03 -0.68 16 3 C -0.15 -1.83 9.03 71.98 0.65 -1.18 16 4 C -0.08 -1.35 1.91 -52.15 -0.10 -1.45 16 5 C -0.11 -2.27 7.73 71.98 0.56 -1.71 16 6 C -0.14 -2.16 9.53 30.62 0.29 -1.87 16 7 C -0.19 -3.47 5.39 -11.54 -0.06 -3.53 16 8 H 0.15 1.94 7.61 -2.39 -0.02 1.93 16 9 C 0.54 14.83 7.33 87.66 0.64 15.47 16 10 O -0.55 -18.65 10.82 -3.06 -0.03 -18.68 16 11 N -0.66 -19.17 5.34 -303.56 -1.62 -20.79 16 12 C 0.19 7.14 6.26 38.14 0.24 7.38 16 13 C -0.20 -7.27 8.65 22.42 0.19 -7.07 16 14 C -0.05 -1.85 10.03 22.23 0.22 -1.63 16 15 C -0.22 -9.37 9.99 22.41 0.22 -9.15 16 16 C 0.14 6.87 6.64 22.56 0.15 7.02 16 17 O -0.25 -14.64 9.16 -22.74 -0.21 -14.85 16 18 C -0.49 -28.27 9.44 67.92 0.64 -27.63 16 19 H 0.09 4.90 5.29 -2.91 -0.02 4.89 16 20 C -0.04 -2.50 5.49 84.83 0.47 -2.04 16 21 N -0.92 -57.35 13.70 21.61 0.30 -57.05 16 22 Si 1.14 47.32 29.92 68.60 2.05 49.38 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 26 C -0.26 -11.53 9.05 22.51 0.20 -11.33 16 27 H 0.05 0.68 6.45 -2.39 -0.02 0.67 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.81 7.90 -2.39 -0.02 0.79 16 31 H 0.05 0.68 7.29 -2.39 -0.02 0.66 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 1.20 7.26 -2.39 -0.02 1.18 16 35 H 0.07 1.28 5.58 -2.39 -0.01 1.27 16 36 H 0.04 1.04 7.02 -2.38 -0.02 1.03 16 37 H 0.13 1.34 8.05 -2.39 -0.02 1.32 16 38 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 39 H 0.42 9.51 8.82 -92.71 -0.82 8.69 16 40 H 0.13 4.61 6.45 -2.91 -0.02 4.60 16 41 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 43 H 0.26 17.01 7.97 -92.71 -0.74 16.27 16 44 H 0.13 5.63 5.71 -2.91 -0.02 5.61 16 Total: -1.00 -74.08 356.06 5.60 -68.48 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.23 Total: 33.89 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 4.88 Total: -40.38 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -1.32 Total: -77.84 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.24 Total: -33.53 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.05 Total: 49.38 kcal Total: -74.08 5.60 -68.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274723111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.609 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds