Wall clock time and date at job start Tue Mar 31 2020 07:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.52807 * 2 1 4 4 C 1.53187 * 109.50687 * 239.92214 * 2 1 3 5 5 N 1.46925 * 108.76889 * 294.70071 * 4 2 1 6 6 C 1.34776 * 120.63018 * 126.40479 * 5 4 2 7 7 O 1.21551 * 120.00204 * 354.24412 * 6 5 4 8 8 C 1.47890 * 120.00028 * 174.24410 * 6 5 4 9 9 C 1.39915 * 120.02327 * 324.54270 * 8 6 5 10 10 C 1.38338 * 120.35662 * 179.71333 * 9 8 6 11 11 C 1.37749 * 120.41208 * 0.56603 * 10 9 8 12 12 C 1.40758 * 120.03757 * 359.71482 * 11 10 9 13 13 C 1.41438 * 120.17546 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99754 * 25.29980 * 13 12 11 15 15 C 1.39928 * 119.99796 * 205.29653 * 13 12 11 16 16 N 1.30830 * 120.00326 * 16.89057 * 15 13 12 17 17 Si 1.86805 * 120.00026 * 196.88862 * 15 13 12 18 18 H 1.48500 * 109.46907 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47251 * 120.00025 * 17 15 13 20 20 H 1.48494 * 109.47282 * 240.00247 * 17 15 13 21 21 C 1.38991 * 120.02650 * 144.81551 * 8 6 5 22 22 C 1.46925 * 118.74002 * 306.38382 * 5 4 2 23 23 C 1.53193 * 108.77306 * 53.60743 * 22 5 4 24 24 C 1.53036 * 109.49315 * 120.08213 * 2 1 3 25 25 H 1.09006 * 109.46055 * 178.59141 * 24 2 1 26 26 O 1.42901 * 109.46373 * 298.56165 * 24 2 1 27 27 H 1.09001 * 109.46975 * 299.92255 * 1 2 3 28 28 H 1.09003 * 109.46576 * 59.91701 * 1 2 3 29 29 H 1.08996 * 109.47360 * 179.91813 * 1 2 3 30 30 H 1.08992 * 109.47003 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46829 * 300.08331 * 3 2 1 32 32 H 1.08998 * 109.46903 * 60.07499 * 3 2 1 33 33 H 1.08998 * 109.60305 * 174.91432 * 4 2 1 34 34 H 1.09005 * 109.70879 * 54.55269 * 4 2 1 35 35 H 1.07997 * 119.82240 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.79277 * 180.25949 * 10 9 8 37 37 H 1.07998 * 119.97870 * 179.74373 * 11 10 9 38 38 H 0.96998 * 120.00271 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.20152 * 359.97438 * 21 8 6 40 40 H 1.08995 * 109.58811 * 293.81983 * 22 5 4 41 41 H 1.09002 * 109.70653 * 173.46206 * 22 5 4 42 42 H 1.08995 * 109.50019 * 185.41357 * 23 22 5 43 43 H 1.09004 * 109.50125 * 65.31721 * 23 22 5 44 44 H 0.96694 * 114.00222 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0416 -0.7237 -1.2495 5 7 1.6515 -2.1379 -1.1697 6 6 0.9747 -2.7216 -2.1785 7 8 0.5899 -2.0540 -3.1186 8 6 0.7001 -4.1743 -2.1418 9 6 1.6419 -5.0511 -1.5923 10 6 1.3897 -6.4106 -1.5491 11 6 0.2140 -6.9182 -2.0566 12 6 -0.7428 -6.0521 -2.6185 13 6 -1.9512 -6.5701 -3.1400 14 1 -2.3402 -7.5079 -2.7717 15 6 -2.6428 -5.8674 -4.1330 16 7 -2.0367 -4.9274 -4.8117 17 14 -4.4314 -6.2716 -4.4897 18 1 -4.8801 -7.3658 -3.5916 19 1 -5.2670 -5.0662 -4.2578 20 1 -4.5686 -6.7046 -5.9034 21 6 -0.4912 -4.6703 -2.6581 22 6 2.0136 -2.9040 0.0306 23 6 1.5026 -2.1557 1.2658 24 6 2.0407 -0.7231 1.2483 25 1 3.1305 -0.7447 1.2352 26 8 1.5924 -0.0319 2.4159 27 1 -0.3633 0.5126 0.8907 28 1 -0.3632 0.5152 -0.8893 29 1 -0.3634 -1.0276 -0.0015 30 1 3.1314 1.4409 -0.0005 31 1 1.6774 1.9566 -0.8892 32 1 1.6797 1.9558 0.8906 33 1 3.1277 -0.6465 -1.2979 34 1 1.6033 -0.2735 -2.1403 35 1 2.5690 -4.6640 -1.1961 36 1 2.1212 -7.0786 -1.1191 37 1 0.0261 -7.9811 -2.0229 38 1 -2.5162 -4.4400 -5.4998 39 1 -1.2194 -3.9975 -3.0868 40 1 3.0974 -3.0046 0.0867 41 1 1.5566 -3.8927 -0.0126 42 1 1.8474 -2.6628 2.1669 43 1 0.4128 -2.1351 1.2538 44 1 1.8798 -0.4351 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275887631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:31 Heat of formation + Delta-G solvation = -67.655063 kcal Electronic energy + Delta-G solvation = -25639.382032 eV Core-core repulsion = 22135.066188 eV Total energy + Delta-G solvation = -3504.315845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40362 -38.43685 -36.98480 -35.57712 -34.23240 -33.52672 -31.04423 -30.25658 -29.48603 -27.22420 -26.74961 -25.27076 -24.94105 -22.49434 -21.82656 -20.95979 -19.15016 -18.46349 -17.60787 -17.29589 -16.03272 -15.81652 -15.16010 -14.93002 -14.91210 -14.86427 -14.26152 -13.75738 -13.51663 -13.38480 -13.10198 -12.86315 -12.82418 -12.48922 -12.10608 -12.03290 -11.83990 -11.71086 -11.56001 -11.45161 -11.16587 -11.04033 -10.93956 -10.80971 -10.71689 -10.46846 -10.20127 -10.07887 -9.85481 -9.70078 -9.25665 -8.92166 -8.29435 -7.62046 -7.51294 -6.80428 -4.43741 2.27580 2.77387 3.06544 3.10595 3.12385 3.38762 3.70141 3.90219 4.12354 4.55710 4.57037 4.70000 4.91819 5.04152 5.21119 5.30176 5.33744 5.46121 5.54514 5.59439 5.67064 5.75890 5.81648 5.94243 5.96941 6.01130 6.04853 6.10297 6.17159 6.22879 6.29912 6.32087 6.52211 6.67545 6.88509 6.96622 7.03116 7.18852 7.36150 7.54045 7.64498 7.75821 7.86091 7.98289 8.14460 8.47850 8.78235 8.80637 8.87886 10.13590 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.004165 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.994305 B = 6720.707098 C = 7304.234858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.615 5.615 6 C 0.568 3.432 7 O -0.540 6.540 8 C -0.121 4.121 9 C -0.226 4.226 10 C -0.097 4.097 11 C -0.213 4.213 12 C 0.102 3.898 13 C -0.460 4.460 14 H 0.081 0.919 15 C 0.073 3.927 16 N -0.781 5.781 17 Si 0.909 3.091 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.099 4.099 22 C 0.097 3.903 23 C -0.171 4.171 24 C 0.117 3.883 25 H 0.052 0.948 26 O -0.563 6.563 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.284 0.716 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 7.124 11.283 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.070 4.070 3 C -0.192 4.192 4 C -0.001 4.001 5 N -0.349 5.349 6 C 0.360 3.640 7 O -0.417 6.417 8 C -0.124 4.124 9 C -0.246 4.246 10 C -0.115 4.115 11 C -0.233 4.233 12 C 0.100 3.900 13 C -0.489 4.489 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.406 5.406 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.119 4.119 22 C -0.026 4.026 23 C -0.210 4.210 24 C 0.058 3.942 25 H 0.070 0.930 26 O -0.368 6.368 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.589 8.037 10.087 14.483 hybrid contribution -0.339 -0.576 0.197 0.696 sum 6.251 7.461 10.284 14.160 Atomic orbital electron populations 1.21779 0.93427 1.02420 1.01520 1.20890 0.97377 0.95530 0.93172 1.21729 1.00405 0.94811 1.02285 1.21589 0.98832 0.81526 0.98168 1.47954 1.57845 1.10371 1.18709 1.18975 0.75620 0.88415 0.81013 1.90706 1.51207 1.65342 1.34456 1.19418 0.98063 0.90177 1.04791 1.20511 0.99864 0.93529 1.10706 1.20452 0.96775 0.94215 1.00069 1.21098 0.95166 0.97898 1.09119 1.17580 0.92032 0.90888 0.89544 1.19625 1.04952 1.06731 1.17600 0.90052 1.25973 1.00165 0.93824 0.94700 1.69812 1.37275 1.17641 1.15825 0.86252 0.81973 0.79588 0.78920 1.18326 1.19597 1.19874 1.21523 0.95777 0.95839 0.98746 1.22214 0.99715 0.97695 0.82977 1.22764 1.03269 0.96117 0.98825 1.21783 0.96435 0.90502 0.85485 0.92958 1.86510 1.79002 1.55573 1.15738 0.92217 0.92820 0.92199 0.92954 0.92523 0.91599 0.92074 0.88544 0.88329 0.88884 0.88653 0.90455 0.85395 0.92134 0.86163 0.90813 0.90124 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.85 37.16 0.29 -1.63 16 2 C -0.07 -0.87 0.60 -154.39 -0.09 -0.96 16 3 C -0.13 -1.47 8.32 37.16 0.31 -1.16 16 4 C 0.12 1.78 5.12 -3.71 -0.02 1.76 16 5 N -0.61 -10.38 2.41 -173.87 -0.42 -10.79 16 6 C 0.57 12.45 7.38 -12.31 -0.09 12.36 16 7 O -0.54 -13.64 16.24 5.32 0.09 -13.55 16 8 C -0.12 -2.82 5.28 -105.04 -0.56 -3.38 16 9 C -0.23 -4.66 7.36 -38.92 -0.29 -4.94 16 10 C -0.10 -2.01 10.01 -39.72 -0.40 -2.41 16 11 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 12 C 0.10 2.66 5.57 -106.87 -0.59 2.07 16 13 C -0.46 -11.97 9.05 -37.73 -0.34 -12.31 16 14 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 15 C 0.07 1.83 5.15 -17.35 -0.09 1.74 16 16 N -0.78 -20.77 10.95 55.55 0.61 -20.16 16 17 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.10 -2.59 8.24 -38.44 -0.32 -2.91 16 22 C 0.10 1.34 4.76 -3.71 -0.02 1.32 16 23 C -0.17 -1.99 5.36 -26.61 -0.14 -2.13 16 24 C 0.12 1.29 2.56 -26.69 -0.07 1.22 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 O -0.56 -5.83 11.98 -35.23 -0.42 -6.25 16 27 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.97 5.97 -51.93 -0.31 0.66 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.59 7.00 -51.93 -0.36 1.23 16 35 H 0.10 1.74 6.03 -52.49 -0.32 1.42 16 36 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 39 H 0.13 3.65 6.12 -52.48 -0.32 3.33 16 40 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 41 H 0.12 1.88 4.47 -51.93 -0.23 1.65 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.10 6.33 -51.93 -0.33 0.77 16 44 H 0.37 2.33 9.08 45.56 0.41 2.75 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -30.07 344.49 -8.38 -38.45 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.61 Total: 10.20 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.79 Total: -16.71 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.19 Total: -30.95 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.34 Total: -19.80 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.07 -8.38 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275887631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.201 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds