Wall clock time and date at job start Tue Mar 31 2020 07:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.52807 * 2 1 4 4 C 1.53187 * 109.50687 * 239.92214 * 2 1 3 5 5 N 1.46925 * 108.76889 * 294.70071 * 4 2 1 6 6 C 1.34776 * 120.63018 * 126.40479 * 5 4 2 7 7 O 1.21551 * 120.00204 * 354.24412 * 6 5 4 8 8 C 1.47890 * 120.00028 * 174.24410 * 6 5 4 9 9 C 1.39915 * 120.02327 * 324.54270 * 8 6 5 10 10 C 1.38338 * 120.35662 * 179.71333 * 9 8 6 11 11 C 1.37749 * 120.41208 * 0.56603 * 10 9 8 12 12 C 1.40758 * 120.03757 * 359.71482 * 11 10 9 13 13 C 1.41438 * 120.17546 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99754 * 25.29980 * 13 12 11 15 15 C 1.39928 * 119.99796 * 205.29653 * 13 12 11 16 16 N 1.30830 * 120.00326 * 16.89057 * 15 13 12 17 17 Si 1.86805 * 120.00026 * 196.88862 * 15 13 12 18 18 H 1.48500 * 109.46907 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47251 * 120.00025 * 17 15 13 20 20 H 1.48494 * 109.47282 * 240.00247 * 17 15 13 21 21 C 1.38991 * 120.02650 * 144.81551 * 8 6 5 22 22 C 1.46925 * 118.74002 * 306.38382 * 5 4 2 23 23 C 1.53193 * 108.77306 * 53.60743 * 22 5 4 24 24 C 1.53036 * 109.49315 * 120.08213 * 2 1 3 25 25 H 1.09006 * 109.46055 * 178.59141 * 24 2 1 26 26 O 1.42901 * 109.46373 * 298.56165 * 24 2 1 27 27 H 1.09001 * 109.46975 * 299.92255 * 1 2 3 28 28 H 1.09003 * 109.46576 * 59.91701 * 1 2 3 29 29 H 1.08996 * 109.47360 * 179.91813 * 1 2 3 30 30 H 1.08992 * 109.47003 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46829 * 300.08331 * 3 2 1 32 32 H 1.08998 * 109.46903 * 60.07499 * 3 2 1 33 33 H 1.08998 * 109.60305 * 174.91432 * 4 2 1 34 34 H 1.09005 * 109.70879 * 54.55269 * 4 2 1 35 35 H 1.07997 * 119.82240 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.79277 * 180.25949 * 10 9 8 37 37 H 1.07998 * 119.97870 * 179.74373 * 11 10 9 38 38 H 0.96998 * 120.00271 * 180.02562 * 16 15 13 39 39 H 1.08003 * 120.20152 * 359.97438 * 21 8 6 40 40 H 1.08995 * 109.58811 * 293.81983 * 22 5 4 41 41 H 1.09002 * 109.70653 * 173.46206 * 22 5 4 42 42 H 1.08995 * 109.50019 * 185.41357 * 23 22 5 43 43 H 1.09004 * 109.50125 * 65.31721 * 23 22 5 44 44 H 0.96694 * 114.00222 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4420 0.0000 4 6 2.0416 -0.7237 -1.2495 5 7 1.6515 -2.1379 -1.1697 6 6 0.9747 -2.7216 -2.1785 7 8 0.5899 -2.0540 -3.1186 8 6 0.7001 -4.1743 -2.1418 9 6 1.6419 -5.0511 -1.5923 10 6 1.3897 -6.4106 -1.5491 11 6 0.2140 -6.9182 -2.0566 12 6 -0.7428 -6.0521 -2.6185 13 6 -1.9512 -6.5701 -3.1400 14 1 -2.3402 -7.5079 -2.7717 15 6 -2.6428 -5.8674 -4.1330 16 7 -2.0367 -4.9274 -4.8117 17 14 -4.4314 -6.2716 -4.4897 18 1 -4.8801 -7.3658 -3.5916 19 1 -5.2670 -5.0662 -4.2578 20 1 -4.5686 -6.7046 -5.9034 21 6 -0.4912 -4.6703 -2.6581 22 6 2.0136 -2.9040 0.0306 23 6 1.5026 -2.1557 1.2658 24 6 2.0407 -0.7231 1.2483 25 1 3.1305 -0.7447 1.2352 26 8 1.5924 -0.0319 2.4159 27 1 -0.3633 0.5126 0.8907 28 1 -0.3632 0.5152 -0.8893 29 1 -0.3634 -1.0276 -0.0015 30 1 3.1314 1.4409 -0.0005 31 1 1.6774 1.9566 -0.8892 32 1 1.6797 1.9558 0.8906 33 1 3.1277 -0.6465 -1.2979 34 1 1.6033 -0.2735 -2.1403 35 1 2.5690 -4.6640 -1.1961 36 1 2.1212 -7.0786 -1.1191 37 1 0.0261 -7.9811 -2.0229 38 1 -2.5162 -4.4400 -5.4998 39 1 -1.2194 -3.9975 -3.0868 40 1 3.0974 -3.0046 0.0867 41 1 1.5566 -3.8927 -0.0126 42 1 1.8474 -2.6628 2.1669 43 1 0.4128 -2.1351 1.2538 44 1 1.8798 -0.4351 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275887631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:27 Heat of formation + Delta-G solvation = -86.964508 kcal Electronic energy + Delta-G solvation = -25640.219353 eV Core-core repulsion = 22135.066188 eV Total energy + Delta-G solvation = -3505.153165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -41.72717 -39.84091 -38.70465 -36.71557 -35.75278 -35.00317 -32.17632 -32.00407 -31.29933 -28.31976 -28.04045 -27.02810 -26.16114 -23.69542 -23.34949 -22.71036 -20.67844 -19.59945 -19.27938 -18.19513 -17.63794 -17.44532 -16.69015 -16.57423 -16.35541 -15.95961 -15.39356 -15.21319 -15.01585 -14.57653 -14.50166 -14.41313 -14.14211 -14.10129 -13.52890 -13.24217 -13.13197 -13.00089 -12.84972 -12.76102 -12.61220 -12.53630 -12.48347 -12.07097 -11.99472 -11.96414 -11.83486 -11.49964 -11.18393 -11.09827 -10.81168 -10.54939 -9.71811 -9.39271 -9.35336 -8.66219 -6.39345 0.47110 0.98680 1.34794 1.44707 1.51111 1.89885 2.09492 2.17586 2.72552 3.28773 3.52177 3.64561 3.70767 3.89378 3.92591 4.08543 4.21856 4.32869 4.36117 4.47485 4.60449 4.63044 4.67249 4.73298 4.75186 4.86830 4.87883 4.91721 4.94269 5.02559 5.07754 5.16723 5.18767 5.20087 5.30076 5.37008 5.41777 5.50687 5.63880 5.84616 5.95209 6.03460 6.27429 6.37967 6.60897 6.87378 6.94074 6.98865 7.22799 8.29866 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.004165 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.994305 B = 6720.707098 C = 7304.234858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.560 3.440 7 O -0.590 6.590 8 C -0.131 4.131 9 C -0.200 4.200 10 C -0.093 4.093 11 C -0.217 4.217 12 C 0.071 3.929 13 C -0.498 4.498 14 H 0.085 0.915 15 C 0.029 3.971 16 N -0.828 5.828 17 Si 0.982 3.018 18 H -0.249 1.249 19 H -0.271 1.271 20 H -0.265 1.265 21 C -0.136 4.136 22 C 0.089 3.911 23 C -0.165 4.165 24 C 0.125 3.875 25 H 0.080 0.920 26 O -0.573 6.573 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.922 6.836 14.146 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.351 3.649 7 O -0.472 6.472 8 C -0.134 4.134 9 C -0.219 4.219 10 C -0.111 4.111 11 C -0.237 4.237 12 C 0.069 3.931 13 C -0.527 4.527 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.454 5.454 17 Si 0.802 3.198 18 H -0.172 1.172 19 H -0.196 1.196 20 H -0.190 1.190 21 C -0.156 4.156 22 C -0.033 4.033 23 C -0.204 4.204 24 C 0.066 3.934 25 H 0.098 0.902 26 O -0.382 6.382 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.441 7.738 13.029 17.854 hybrid contribution -1.022 -0.440 -0.512 1.225 sum 8.419 7.298 12.516 16.757 Atomic orbital electron populations 1.21721 0.95511 1.00471 1.00977 1.20879 0.95595 0.96907 0.93511 1.21679 1.01645 0.93166 1.02132 1.21786 1.00449 0.79937 0.98206 1.47977 1.55676 1.11536 1.18135 1.18915 0.76188 0.88022 0.81742 1.90674 1.53557 1.66058 1.36891 1.19703 0.97645 0.91758 1.04289 1.20980 1.00037 0.93204 1.07715 1.20935 0.96488 0.94927 0.98718 1.21404 0.95582 0.98340 1.08375 1.17915 0.93246 0.91272 0.90715 1.19901 1.06312 1.07595 1.18888 0.89731 1.26863 1.04380 0.93304 0.94033 1.69927 1.39091 1.19406 1.16956 0.85168 0.76167 0.79381 0.79091 1.17212 1.19618 1.18979 1.21308 0.96967 0.95798 1.01568 1.22463 1.01814 0.96710 0.82283 1.22728 1.01610 0.96988 0.99040 1.21648 0.97587 0.89295 0.84854 0.90220 1.86474 1.79388 1.55760 1.16545 0.91531 0.94516 0.94831 0.90836 0.93009 0.91492 0.88829 0.91398 0.84200 0.84149 0.87352 0.90441 0.89183 0.88294 0.87989 0.87206 0.92913 0.75598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 7.85 71.98 0.57 -3.22 16 2 C -0.07 -1.59 0.60 -52.11 -0.03 -1.62 16 3 C -0.13 -2.48 8.32 71.98 0.60 -1.88 16 4 C 0.12 3.29 5.12 86.36 0.44 3.73 16 5 N -0.60 -19.65 2.41 -822.27 -1.98 -21.63 16 6 C 0.56 25.31 7.38 86.80 0.64 25.95 16 7 O -0.59 -31.83 16.24 -3.88 -0.06 -31.90 16 8 C -0.13 -6.22 5.28 -20.13 -0.11 -6.33 16 9 C -0.20 -7.75 7.36 22.70 0.17 -7.59 16 10 C -0.09 -3.58 10.01 22.18 0.22 -3.36 16 11 C -0.22 -10.03 9.78 22.77 0.22 -9.80 16 12 C 0.07 3.85 5.57 -21.32 -0.12 3.73 16 13 C -0.50 -27.23 9.05 23.47 0.21 -27.01 16 14 H 0.08 4.36 7.90 -2.91 -0.02 4.33 16 15 C 0.03 1.52 5.15 85.25 0.44 1.96 16 16 N -0.83 -47.35 10.95 21.82 0.24 -47.11 16 17 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 18 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 C -0.14 -7.60 8.24 23.01 0.19 -7.41 16 22 C 0.09 2.14 4.76 86.36 0.41 2.55 16 23 C -0.17 -3.27 5.36 30.67 0.16 -3.11 16 24 C 0.13 2.25 2.56 30.62 0.08 2.33 16 25 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 26 O -0.57 -9.60 11.98 -148.98 -1.78 -11.39 16 27 H 0.07 1.81 7.72 -2.39 -0.02 1.79 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 1.13 5.97 -2.39 -0.01 1.12 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.30 7.65 -2.39 -0.02 1.28 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.30 7.00 -2.38 -0.02 2.28 16 35 H 0.14 4.25 6.03 -2.91 -0.02 4.23 16 36 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 39 H 0.09 5.65 6.12 -2.91 -0.02 5.64 16 40 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 41 H 0.10 2.87 4.47 -2.39 -0.01 2.86 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.37 6.33 -2.38 -0.02 1.35 16 44 H 0.39 3.07 9.08 -74.06 -0.67 2.40 16 Total: -1.00 -72.86 344.49 2.88 -69.97 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.34 Total: 31.00 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 4.10 Total: -31.07 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -1.74 Total: -68.74 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.85 Total: -43.28 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -72.86 2.88 -69.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275887631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.992 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds