Wall clock time and date at job start Tue Mar 31 2020 07:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.52344 * 2 1 4 4 C 1.53189 * 109.49796 * 239.91875 * 2 1 3 5 5 N 1.46926 * 108.77579 * 185.41422 * 4 2 1 6 6 C 1.34777 * 120.62916 * 233.62970 * 5 4 2 7 7 O 1.21558 * 119.99986 * 355.68226 * 6 5 4 8 8 C 1.47889 * 120.00176 * 175.68037 * 6 5 4 9 9 C 1.39917 * 120.02509 * 225.75144 * 8 6 5 10 10 C 1.38330 * 120.35655 * 179.78253 * 9 8 6 11 11 C 1.37749 * 120.41282 * 0.47249 * 10 9 8 12 12 C 1.40755 * 120.03840 * 359.78193 * 11 10 9 13 13 C 1.41434 * 120.17861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00168 * 205.02954 * 13 12 11 15 15 C 1.39938 * 119.99967 * 25.02994 * 13 12 11 16 16 N 1.30838 * 119.99819 * 17.10058 * 15 13 12 17 17 Si 1.86798 * 120.00347 * 197.09618 * 15 13 12 18 18 H 1.48501 * 109.46959 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47560 * 120.00143 * 17 15 13 20 20 H 1.48501 * 109.47094 * 240.00327 * 17 15 13 21 21 C 1.38997 * 120.02298 * 46.02294 * 8 6 5 22 22 C 1.46916 * 118.73958 * 53.60992 * 5 4 2 23 23 C 1.53187 * 108.77772 * 306.39100 * 22 5 4 24 24 C 1.53041 * 109.49718 * 120.08407 * 2 1 3 25 25 H 1.09000 * 109.46243 * 61.29397 * 24 2 1 26 26 O 1.42909 * 109.44676 * 301.32661 * 24 2 1 27 27 H 1.09004 * 109.47100 * 299.91820 * 1 2 3 28 28 H 1.08997 * 109.47051 * 59.91900 * 1 2 3 29 29 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47408 * 300.07955 * 3 2 1 32 32 H 1.09006 * 109.47193 * 60.08322 * 3 2 1 33 33 H 1.08998 * 109.58810 * 305.20323 * 4 2 1 34 34 H 1.09005 * 109.58779 * 65.48465 * 4 2 1 35 35 H 1.08002 * 119.82168 * 0.02562 * 9 8 6 36 36 H 1.07996 * 119.79575 * 180.23390 * 10 9 8 37 37 H 1.08001 * 119.98579 * 179.76233 * 11 10 9 38 38 H 0.97004 * 119.99503 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.19997 * 0.02562 * 21 8 6 40 40 H 1.09000 * 109.58595 * 186.60285 * 22 5 4 41 41 H 1.09007 * 109.59007 * 66.17854 * 22 5 4 42 42 H 1.09005 * 109.50266 * 174.58599 * 23 22 5 43 43 H 1.09006 * 109.50016 * 294.65370 * 23 22 5 44 44 H 0.96702 * 113.99890 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2811 -0.3856 -2.1779 7 8 3.7711 0.0349 -3.1981 8 6 5.7537 -0.4104 -2.0432 9 6 6.5097 0.7062 -2.4162 10 6 7.8871 0.6921 -2.2889 11 6 8.5311 -0.4244 -1.8028 12 6 7.7876 -1.5591 -1.4275 13 6 8.4458 -2.7073 -0.9287 14 1 7.9810 -3.6781 -1.0186 15 6 9.6992 -2.5855 -0.3184 16 7 10.1152 -1.4155 0.0937 17 14 10.7784 -4.0933 -0.0921 18 1 10.0830 -5.2862 -0.6387 19 1 12.0625 -3.8956 -0.8112 20 1 11.0472 -4.2971 1.3541 21 6 6.3880 -1.5452 -1.5513 22 6 4.1052 -1.4267 0.0307 23 6 3.5709 -0.6951 1.2660 24 6 2.0408 -0.7232 1.2483 25 1 1.6967 -1.7573 1.2353 26 8 1.5391 -0.0692 2.4158 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1313 1.4410 -0.0005 31 1 1.6773 1.9566 -0.8893 32 1 1.6796 1.9558 0.8908 33 1 1.6052 -1.7216 -1.2980 34 1 1.7616 -0.1592 -2.1391 35 1 6.0150 1.5854 -2.8018 36 1 8.4615 1.5604 -2.5759 37 1 9.6071 -0.4293 -1.7099 38 1 10.9839 -1.3312 0.5170 39 1 5.8087 -2.4111 -1.2668 40 1 5.1895 -1.3246 -0.0138 41 1 3.8375 -2.4819 0.0867 42 1 3.9334 -1.1898 2.1671 43 1 3.9164 0.3387 1.2544 44 1 1.8229 -0.4748 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275887636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:34 Heat of formation + Delta-G solvation = -71.690750 kcal Electronic energy + Delta-G solvation = -25611.469050 eV Core-core repulsion = 22106.978205 eV Total energy + Delta-G solvation = -3504.490845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.42129 -38.48049 -37.06415 -35.58947 -34.09746 -33.65679 -31.02309 -30.07658 -29.88821 -27.25271 -26.54934 -25.43354 -24.89859 -22.50961 -21.86467 -20.85352 -19.40950 -18.49935 -17.46926 -17.22811 -16.21864 -15.73247 -15.27485 -15.03195 -14.94856 -14.77092 -14.29344 -13.81051 -13.62957 -13.37174 -13.10917 -12.95181 -12.78271 -12.47539 -12.10305 -12.03642 -11.83229 -11.70860 -11.52800 -11.45782 -11.25752 -11.10120 -10.96336 -10.79334 -10.76739 -10.55118 -10.30772 -10.19515 -9.82672 -9.59646 -9.29972 -9.05540 -8.34735 -7.62630 -7.55287 -6.88242 -4.50548 2.30719 2.66325 3.01042 3.05495 3.08099 3.31318 3.59314 3.84555 4.14099 4.50303 4.58215 4.72244 4.92945 5.08020 5.22691 5.28535 5.33607 5.46990 5.50558 5.63358 5.67208 5.77113 5.82610 5.89929 5.95597 6.01639 6.12040 6.15633 6.20919 6.22117 6.31307 6.34437 6.50363 6.69810 6.84105 6.86475 6.99019 7.11689 7.30483 7.57797 7.58866 7.76099 7.84908 7.91377 8.05034 8.45136 8.70932 8.73637 8.77517 10.06415 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.004208 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.882797 B = 6652.145114 C = 7429.275302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.610 5.610 6 C 0.571 3.429 7 O -0.553 6.553 8 C -0.107 4.107 9 C -0.184 4.184 10 C -0.110 4.110 11 C -0.141 4.141 12 C 0.104 3.896 13 C -0.463 4.463 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.200 4.200 22 C 0.091 3.909 23 C -0.169 4.169 24 C 0.116 3.884 25 H 0.053 0.947 26 O -0.564 6.564 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.281 0.719 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -0.292 5.251 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.070 4.070 3 C -0.192 4.192 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.363 3.637 7 O -0.432 6.432 8 C -0.110 4.110 9 C -0.204 4.204 10 C -0.129 4.129 11 C -0.160 4.160 12 C 0.102 3.898 13 C -0.492 4.492 14 H 0.098 0.902 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.200 1.200 21 C -0.220 4.220 22 C -0.032 4.032 23 C -0.208 4.208 24 C 0.058 3.942 25 H 0.071 0.929 26 O -0.369 6.369 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.203 0.421 4.373 12.033 hybrid contribution 0.872 -1.064 0.728 1.556 sum -10.331 -0.644 5.101 11.540 Atomic orbital electron populations 1.21730 0.93563 1.01668 1.02247 1.20892 0.96085 0.96772 0.93247 1.21793 1.01634 0.94323 1.01500 1.21598 0.80369 1.00112 0.98033 1.47969 1.05744 1.61724 1.18812 1.18977 0.87743 0.75039 0.81964 1.90672 1.75773 1.47784 1.28962 1.19254 0.89950 0.97104 1.04718 1.20325 0.93650 0.97487 1.08984 1.20660 0.93627 0.97885 1.00722 1.21530 1.00156 0.93639 1.00714 1.17525 0.90191 0.93048 0.89052 1.19579 1.01479 0.94739 1.33400 0.90240 1.25893 0.97917 0.97239 0.93050 1.69809 1.19337 1.24950 1.27782 0.86269 0.79938 0.82003 0.78611 1.18366 1.19655 1.19959 1.21163 0.94728 0.96989 1.09099 1.22273 1.02405 0.95796 0.82705 1.22723 0.95980 1.03082 0.98974 1.21791 0.92365 0.94690 0.85401 0.92905 1.86492 1.75670 1.58956 1.15805 0.91543 0.92587 0.92897 0.92131 0.92970 0.92090 0.91922 0.88659 0.88693 0.88645 0.86013 0.90767 0.87921 0.85601 0.91799 0.90596 0.90144 0.77867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.32 37.16 0.31 -1.13 16 2 C -0.07 -0.86 0.60 -154.39 -0.09 -0.95 16 3 C -0.14 -1.86 7.85 37.16 0.29 -1.57 16 4 C 0.12 1.74 5.10 -3.71 -0.02 1.72 16 5 N -0.61 -10.24 2.41 -173.87 -0.42 -10.66 16 6 C 0.57 11.89 7.29 -12.31 -0.09 11.80 16 7 O -0.55 -12.83 16.43 5.32 0.09 -12.74 16 8 C -0.11 -2.40 5.18 -105.04 -0.54 -2.94 16 9 C -0.18 -4.18 9.69 -38.92 -0.38 -4.55 16 10 C -0.11 -2.50 10.01 -39.73 -0.40 -2.90 16 11 C -0.14 -3.45 8.69 -38.81 -0.34 -3.79 16 12 C 0.10 2.58 5.57 -106.87 -0.59 1.98 16 13 C -0.46 -11.35 9.05 -37.73 -0.34 -11.70 16 14 H 0.08 1.88 7.90 -52.48 -0.41 1.46 16 15 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 16 N -0.79 -19.16 10.94 55.55 0.61 -18.55 16 17 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.20 -4.51 7.06 -38.44 -0.27 -4.79 16 22 C 0.09 1.37 5.21 -3.72 -0.02 1.35 16 23 C -0.17 -2.16 5.36 -26.61 -0.14 -2.30 16 24 C 0.12 1.34 2.56 -26.69 -0.07 1.27 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 O -0.56 -6.10 11.98 -35.23 -0.42 -6.52 16 27 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.95 5.97 -51.93 -0.31 0.64 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.81 7.72 -51.93 -0.40 0.41 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.49 7.04 -51.93 -0.37 1.12 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 38 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 39 H 0.10 2.14 6.58 -52.49 -0.35 1.80 16 40 H 0.13 2.25 4.22 -51.93 -0.22 2.03 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.16 6.34 -51.93 -0.33 0.84 16 44 H 0.37 2.61 9.08 45.56 0.41 3.02 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -28.13 345.42 -8.39 -36.52 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.63 Total: 11.00 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.78 Total: -16.79 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.19 Total: -29.21 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.33 Total: -19.26 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.13 -8.39 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275887636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.171 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds