Wall clock time and date at job start Tue Mar 31 2020 07:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.52344 * 2 1 4 4 C 1.53189 * 109.49796 * 239.91875 * 2 1 3 5 5 N 1.46926 * 108.77579 * 185.41422 * 4 2 1 6 6 C 1.34777 * 120.62916 * 233.62970 * 5 4 2 7 7 O 1.21558 * 119.99986 * 355.68226 * 6 5 4 8 8 C 1.47889 * 120.00176 * 175.68037 * 6 5 4 9 9 C 1.39917 * 120.02509 * 225.75144 * 8 6 5 10 10 C 1.38330 * 120.35655 * 179.78253 * 9 8 6 11 11 C 1.37749 * 120.41282 * 0.47249 * 10 9 8 12 12 C 1.40755 * 120.03840 * 359.78193 * 11 10 9 13 13 C 1.41434 * 120.17861 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00168 * 205.02954 * 13 12 11 15 15 C 1.39938 * 119.99967 * 25.02994 * 13 12 11 16 16 N 1.30838 * 119.99819 * 17.10058 * 15 13 12 17 17 Si 1.86798 * 120.00347 * 197.09618 * 15 13 12 18 18 H 1.48501 * 109.46959 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47560 * 120.00143 * 17 15 13 20 20 H 1.48501 * 109.47094 * 240.00327 * 17 15 13 21 21 C 1.38997 * 120.02298 * 46.02294 * 8 6 5 22 22 C 1.46916 * 118.73958 * 53.60992 * 5 4 2 23 23 C 1.53187 * 108.77772 * 306.39100 * 22 5 4 24 24 C 1.53041 * 109.49718 * 120.08407 * 2 1 3 25 25 H 1.09000 * 109.46243 * 61.29397 * 24 2 1 26 26 O 1.42909 * 109.44676 * 301.32661 * 24 2 1 27 27 H 1.09004 * 109.47100 * 299.91820 * 1 2 3 28 28 H 1.08997 * 109.47051 * 59.91900 * 1 2 3 29 29 H 1.09004 * 109.47188 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47408 * 300.07955 * 3 2 1 32 32 H 1.09006 * 109.47193 * 60.08322 * 3 2 1 33 33 H 1.08998 * 109.58810 * 305.20323 * 4 2 1 34 34 H 1.09005 * 109.58779 * 65.48465 * 4 2 1 35 35 H 1.08002 * 119.82168 * 0.02562 * 9 8 6 36 36 H 1.07996 * 119.79575 * 180.23390 * 10 9 8 37 37 H 1.08001 * 119.98579 * 179.76233 * 11 10 9 38 38 H 0.97004 * 119.99503 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.19997 * 0.02562 * 21 8 6 40 40 H 1.09000 * 109.58595 * 186.60285 * 22 5 4 41 41 H 1.09007 * 109.59007 * 66.17854 * 22 5 4 42 42 H 1.09005 * 109.50266 * 174.58599 * 23 22 5 43 43 H 1.09006 * 109.50016 * 294.65370 * 23 22 5 44 44 H 0.96702 * 113.99890 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2811 -0.3856 -2.1779 7 8 3.7711 0.0349 -3.1981 8 6 5.7537 -0.4104 -2.0432 9 6 6.5097 0.7062 -2.4162 10 6 7.8871 0.6921 -2.2889 11 6 8.5311 -0.4244 -1.8028 12 6 7.7876 -1.5591 -1.4275 13 6 8.4458 -2.7073 -0.9287 14 1 7.9810 -3.6781 -1.0186 15 6 9.6992 -2.5855 -0.3184 16 7 10.1152 -1.4155 0.0937 17 14 10.7784 -4.0933 -0.0921 18 1 10.0830 -5.2862 -0.6387 19 1 12.0625 -3.8956 -0.8112 20 1 11.0472 -4.2971 1.3541 21 6 6.3880 -1.5452 -1.5513 22 6 4.1052 -1.4267 0.0307 23 6 3.5709 -0.6951 1.2660 24 6 2.0408 -0.7232 1.2483 25 1 1.6967 -1.7573 1.2353 26 8 1.5391 -0.0692 2.4158 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1313 1.4410 -0.0005 31 1 1.6773 1.9566 -0.8893 32 1 1.6796 1.9558 0.8908 33 1 1.6052 -1.7216 -1.2980 34 1 1.7616 -0.1592 -2.1391 35 1 6.0150 1.5854 -2.8018 36 1 8.4615 1.5604 -2.5759 37 1 9.6071 -0.4293 -1.7099 38 1 10.9839 -1.3312 0.5170 39 1 5.8087 -2.4111 -1.2668 40 1 5.1895 -1.3246 -0.0138 41 1 3.8375 -2.4819 0.0867 42 1 3.9334 -1.1898 2.1671 43 1 3.9164 0.3387 1.2544 44 1 1.8229 -0.4748 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275887636.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:33 Heat of formation + Delta-G solvation = -87.866906 kcal Electronic energy + Delta-G solvation = -25612.170501 eV Core-core repulsion = 22106.978205 eV Total energy + Delta-G solvation = -3505.192296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.74674 -39.86172 -38.76476 -36.71179 -35.60632 -35.09778 -32.18272 -31.87041 -31.61811 -28.28907 -27.72885 -27.22956 -26.16197 -23.80458 -23.31769 -22.61053 -20.96877 -19.61105 -19.02345 -18.21696 -17.73978 -17.41616 -16.79813 -16.59655 -16.34432 -15.97388 -15.46427 -15.24050 -15.06291 -14.61284 -14.51409 -14.34842 -14.13756 -14.03660 -13.51152 -13.22467 -13.11184 -12.97423 -12.85840 -12.75107 -12.66163 -12.53844 -12.44519 -12.24325 -12.01235 -11.98861 -11.85171 -11.39596 -11.19029 -11.05924 -10.85776 -10.62491 -9.73196 -9.44103 -9.35149 -8.64850 -6.37169 0.53316 0.91161 1.42654 1.49009 1.56863 1.79689 2.05985 2.22787 2.72122 3.26642 3.49889 3.62245 3.71081 3.83624 3.90723 4.08151 4.19756 4.32776 4.34382 4.40454 4.52816 4.62614 4.65724 4.71933 4.75852 4.87888 4.89389 4.93128 4.94783 5.02427 5.03934 5.15661 5.16739 5.19621 5.31311 5.37545 5.40188 5.47832 5.61756 5.79364 5.98536 6.02050 6.19779 6.33867 6.60534 6.89268 6.92585 6.94129 7.13512 8.32182 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018602 B = 0.004208 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.882797 B = 6652.145114 C = 7429.275302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.567 3.433 7 O -0.585 6.585 8 C -0.112 4.112 9 C -0.199 4.199 10 C -0.109 4.109 11 C -0.165 4.165 12 C 0.080 3.920 13 C -0.489 4.489 14 H 0.082 0.918 15 C 0.040 3.960 16 N -0.821 5.821 17 Si 0.979 3.021 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.266 1.266 21 C -0.193 4.193 22 C 0.088 3.912 23 C -0.163 4.163 24 C 0.125 3.875 25 H 0.075 0.925 26 O -0.572 6.572 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.289 0.711 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 -1.885 6.696 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.188 4.188 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.358 3.642 7 O -0.467 6.467 8 C -0.115 4.115 9 C -0.219 4.219 10 C -0.127 4.127 11 C -0.185 4.185 12 C 0.078 3.922 13 C -0.518 4.518 14 H 0.100 0.900 15 C -0.175 4.175 16 N -0.447 5.447 17 Si 0.800 3.200 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.190 1.190 21 C -0.213 4.213 22 C -0.034 4.034 23 C -0.201 4.201 24 C 0.066 3.934 25 H 0.092 0.908 26 O -0.380 6.380 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.470 -1.176 5.868 13.832 hybrid contribution 1.203 -0.508 0.334 1.348 sum -11.267 -1.685 6.201 12.971 Atomic orbital electron populations 1.21677 0.91658 1.02848 1.02380 1.20884 0.97479 0.95454 0.93058 1.21740 0.99927 0.95741 1.01425 1.21819 0.78463 1.01589 0.98454 1.47989 1.06820 1.60025 1.18120 1.18769 0.87367 0.75520 0.82569 1.90648 1.76021 1.49630 1.30384 1.19510 0.91311 0.96833 1.03834 1.20513 0.93856 0.98053 1.09456 1.20860 0.93872 0.98112 0.99867 1.21501 0.99676 0.94672 1.02631 1.17859 0.91232 0.93522 0.89637 1.19823 1.02797 0.94755 1.34475 0.89994 1.26683 0.98585 1.00088 0.92181 1.69857 1.20012 1.26855 1.27962 0.85197 0.77819 0.78178 0.78812 1.18096 1.19349 1.19032 1.21274 0.94146 0.97478 1.08401 1.22337 1.00737 0.97450 0.82907 1.22678 0.97314 1.01581 0.98568 1.21653 0.90927 0.95528 0.85293 0.90750 1.86458 1.75534 1.59459 1.16513 0.91530 0.92380 0.91184 0.94630 0.93546 0.91623 0.89331 0.90279 0.88180 0.86513 0.87260 0.89994 0.86504 0.88558 0.89261 0.88312 0.92415 0.75701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.32 71.98 0.60 -1.76 16 2 C -0.07 -1.55 0.60 -52.11 -0.03 -1.58 16 3 C -0.13 -3.54 7.85 71.98 0.57 -2.98 16 4 C 0.12 3.18 5.10 86.36 0.44 3.62 16 5 N -0.60 -19.65 2.41 -822.28 -1.98 -21.63 16 6 C 0.57 23.84 7.29 86.80 0.63 24.47 16 7 O -0.59 -27.57 16.43 -3.90 -0.06 -27.64 16 8 C -0.11 -5.10 5.18 -20.13 -0.10 -5.20 16 9 C -0.20 -9.22 9.69 22.70 0.22 -9.00 16 10 C -0.11 -5.05 10.01 22.18 0.22 -4.82 16 11 C -0.17 -8.35 8.69 22.77 0.20 -8.15 16 12 C 0.08 4.04 5.57 -21.32 -0.12 3.92 16 13 C -0.49 -24.31 9.05 23.47 0.21 -24.09 16 14 H 0.08 3.89 7.90 -2.91 -0.02 3.87 16 15 C 0.04 1.88 5.15 85.25 0.44 2.32 16 16 N -0.82 -40.09 10.94 21.83 0.24 -39.86 16 17 Si 0.98 35.55 29.59 68.60 2.03 37.58 16 18 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 19 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 20 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 21 C -0.19 -8.87 7.06 23.01 0.16 -8.71 16 22 C 0.09 2.52 5.21 86.36 0.45 2.97 16 23 C -0.16 -3.85 5.36 30.67 0.16 -3.68 16 24 C 0.12 2.49 2.56 30.62 0.08 2.57 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 O -0.57 -10.50 11.98 -148.98 -1.78 -12.28 16 27 H 0.07 1.26 7.65 -2.38 -0.02 1.24 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.03 1.12 5.97 -2.39 -0.01 1.11 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.68 7.72 -2.38 -0.02 1.66 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.42 7.04 -2.38 -0.02 2.40 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.11 5.71 6.16 -2.91 -0.02 5.70 16 38 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 39 H 0.12 4.89 6.58 -2.91 -0.02 4.87 16 40 H 0.10 3.43 4.22 -2.39 -0.01 3.42 16 41 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.06 1.64 6.34 -2.38 -0.02 1.63 16 44 H 0.39 4.05 9.08 -74.06 -0.67 3.37 16 Total: -1.00 -61.78 345.42 2.91 -58.87 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.34 Total: 35.05 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 4.13 Total: -30.10 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.74 Total: -61.49 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.85 Total: -39.92 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Total: -61.78 2.91 -58.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275887636.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.994 kcal (2) G-P(sol) polarization free energy of solvation -61.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds