Wall clock time and date at job start Tue Mar 31 2020 09:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46629 * 2 1 4 4 C 1.52999 * 109.99598 * 174.87591 * 3 2 1 5 5 O 1.42898 * 109.47112 * 303.18015 * 4 3 2 6 6 C 1.54328 * 109.87946 * 295.96627 * 3 2 1 7 7 C 1.55156 * 102.93747 * 141.61352 * 6 3 2 8 8 C 1.55126 * 101.48865 * 324.33295 * 7 6 3 9 9 N 1.47022 * 109.88314 * 53.77815 * 3 2 1 10 10 C 1.34773 * 125.64705 * 61.61036 * 9 3 2 11 11 O 1.21587 * 120.00468 * 5.30297 * 10 9 3 12 12 C 1.47647 * 119.99747 * 185.31242 * 10 9 3 13 13 C 1.40009 * 119.89461 * 190.41190 * 12 10 9 14 14 C 1.36316 * 120.10689 * 179.97438 * 13 12 10 15 15 C 1.40886 * 119.89318 * 0.02562 * 14 13 12 16 16 C 1.41106 * 120.10524 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00035 * 348.70585 * 16 15 14 18 18 C 1.40227 * 120.00034 * 168.70911 * 16 15 14 19 19 N 1.30649 * 119.99942 * 324.02734 * 18 16 15 20 20 Si 1.86799 * 119.99919 * 144.02879 * 18 16 15 21 21 H 1.48495 * 109.47448 * 265.00159 * 20 18 16 22 22 H 1.48499 * 109.47172 * 25.00400 * 20 18 16 23 23 H 1.48503 * 109.46769 * 145.00066 * 20 18 16 24 24 C 1.40885 * 119.79063 * 0.25337 * 15 14 13 25 25 C 1.36322 * 119.89078 * 359.46434 * 24 15 14 26 26 H 1.09003 * 109.47349 * 306.55359 * 1 2 3 27 27 H 1.08990 * 109.47279 * 66.55849 * 1 2 3 28 28 H 1.09002 * 109.46706 * 186.55915 * 1 2 3 29 29 H 1.08995 * 109.47087 * 240.00125 * 2 1 3 30 30 H 1.09001 * 109.47206 * 119.99265 * 2 1 3 31 31 H 1.09009 * 109.47145 * 63.17437 * 4 3 2 32 32 H 1.08994 * 109.47498 * 183.17799 * 4 3 2 33 33 H 0.96705 * 114.00266 * 180.02562 * 5 4 3 34 34 H 1.08999 * 110.72012 * 259.97831 * 6 3 2 35 35 H 1.08999 * 110.71801 * 23.07721 * 6 3 2 36 36 H 1.09000 * 111.00554 * 82.57365 * 7 6 3 37 37 H 1.09002 * 111.00073 * 206.38704 * 7 6 3 38 38 H 1.09000 * 110.49767 * 278.45369 * 8 7 6 39 39 H 1.08999 * 110.34568 * 156.05748 * 8 7 6 40 40 H 1.08004 * 119.94949 * 0.02562 * 13 12 10 41 41 H 1.08006 * 120.05503 * 179.97438 * 14 13 12 42 42 H 0.96999 * 119.99907 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.05591 * 179.74542 * 24 15 14 44 44 H 1.08008 * 119.94461 * 180.30078 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5644 1.4587 0.1284 5 8 3.9500 0.7603 1.3140 6 6 1.6157 2.1492 -1.3048 7 6 1.2621 3.5817 -0.8250 8 6 0.6367 3.2962 0.5656 9 7 1.4363 2.1863 1.1154 10 6 1.5848 1.8978 2.4234 11 8 2.3426 1.0117 2.7684 12 6 0.8270 2.6575 3.4376 13 6 1.1382 2.5122 4.7949 14 6 0.4417 3.2120 5.7349 15 6 -0.5930 4.0821 5.3386 16 6 -1.3172 4.8082 6.3079 17 1 -1.2091 4.5675 7.3551 18 6 -2.1774 5.8422 5.9113 19 7 -1.8594 6.6044 4.8990 20 14 -3.7779 6.1299 6.8305 21 1 -4.8826 5.4228 6.1343 22 1 -3.6533 5.6104 8.2161 23 1 -4.0702 7.5853 6.8719 24 6 -0.9064 4.2205 3.9721 25 6 -0.2005 3.5209 3.0390 26 1 -0.3634 0.6121 0.8255 27 1 -0.3633 0.4088 -0.9427 28 1 -0.3633 -1.0210 0.1174 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 4.0074 0.9716 -0.7404 32 1 3.9136 2.4897 0.1843 33 1 4.9055 0.7308 1.4601 34 1 2.4412 2.1734 -2.0162 35 1 0.7453 1.6604 -1.7426 36 1 2.1580 4.1960 -0.7355 37 1 0.5357 4.0484 -1.4904 38 1 -0.4062 2.9969 0.4609 39 1 0.7176 4.1751 1.2052 40 1 1.9319 1.8453 5.0977 41 1 0.6822 3.0989 6.7817 42 1 -2.4542 7.3199 4.6249 43 1 -1.7015 4.8832 3.6639 44 1 -0.4368 3.6301 1.9907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275889643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:02 Heat of formation + Delta-G solvation = -46.932915 kcal Electronic energy + Delta-G solvation = -25855.388848 eV Core-core repulsion = 22351.971583 eV Total energy + Delta-G solvation = -3503.417265 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.26241 -37.74245 -36.40527 -35.83582 -33.96486 -32.96806 -31.36358 -29.89008 -29.43335 -28.85758 -25.88093 -25.03043 -23.31093 -22.40387 -21.78521 -20.67807 -19.89124 -17.84488 -17.48646 -17.03391 -16.00280 -15.94432 -15.45645 -15.02273 -14.58406 -14.29903 -13.90416 -13.71977 -13.33203 -13.15809 -12.91895 -12.78291 -12.51974 -12.22711 -12.13923 -11.99046 -11.85472 -11.76865 -11.29524 -11.21245 -10.99965 -10.94372 -10.91061 -10.70252 -10.57540 -10.39761 -10.29270 -9.95690 -9.54640 -9.39568 -8.97301 -8.49849 -7.93797 -7.67194 -7.52994 -7.17093 -4.49668 2.40464 2.90222 2.96480 3.01448 3.14131 3.65811 3.72335 3.95138 4.41121 4.56400 4.66650 4.79161 5.02632 5.19205 5.34766 5.42460 5.47357 5.55531 5.64257 5.66383 5.69921 5.75764 5.87520 5.93463 6.02458 6.06948 6.16072 6.22410 6.27653 6.30328 6.42930 6.50820 6.65498 6.77437 6.88857 7.03377 7.19414 7.24872 7.50484 7.80397 7.90598 7.98512 8.06901 8.10932 8.43469 8.48173 8.68571 8.86343 9.41152 9.73831 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.004024 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.499980 B = 6956.768737 C = 7482.043796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.172 3.828 4 C 0.072 3.928 5 O -0.519 6.519 6 C -0.125 4.125 7 C -0.138 4.138 8 C 0.096 3.904 9 N -0.613 5.613 10 C 0.579 3.421 11 O -0.526 6.526 12 C -0.290 4.290 13 C -0.018 4.018 14 C -0.249 4.249 15 C 0.123 3.877 16 C -0.446 4.446 17 H 0.087 0.913 18 C 0.088 3.912 19 N -0.745 5.745 20 Si 0.903 3.097 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.275 1.275 24 C -0.204 4.204 25 C -0.086 4.086 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.354 0.646 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.288 0.712 43 H 0.113 0.887 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -3.172 -12.386 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.086 3.914 4 C -0.008 4.008 5 O -0.321 6.321 6 C -0.163 4.163 7 C -0.176 4.176 8 C -0.027 4.027 9 N -0.350 5.350 10 C 0.375 3.625 11 O -0.403 6.403 12 C -0.294 4.294 13 C -0.037 4.037 14 C -0.269 4.269 15 C 0.120 3.880 16 C -0.472 4.472 17 H 0.105 0.895 18 C -0.138 4.138 19 N -0.365 5.365 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.200 1.200 24 C -0.223 4.223 25 C -0.104 4.104 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.199 0.801 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.664 -3.527 -12.169 12.947 hybrid contribution -0.157 0.494 0.170 0.546 sum 2.507 -3.033 -11.998 12.627 Atomic orbital electron populations 1.21760 0.95898 1.01252 1.01597 1.21741 0.95953 0.95744 1.02733 1.20850 0.91223 0.92607 0.86713 1.22459 0.94856 0.95331 0.88107 1.87191 1.25667 1.77292 1.41903 1.22704 1.01996 0.95955 0.95670 1.22913 1.01395 0.96369 0.96900 1.22768 0.94657 0.91521 0.93755 1.48362 1.51249 1.30650 1.04696 1.18304 0.81092 0.83174 0.79906 1.90707 1.37743 1.32747 1.79126 1.18861 1.07115 1.10844 0.92576 1.20306 0.96368 0.95266 0.91786 1.20553 1.02211 1.06742 0.97352 1.17708 0.88315 0.89292 0.92661 1.19839 1.19543 1.12232 0.95584 0.89537 1.26158 0.99511 0.93703 0.94425 1.69875 1.34325 1.10234 1.22097 0.86375 0.81396 0.78238 0.81436 1.18749 1.17958 1.19989 1.20905 1.03552 1.04939 0.92917 1.21486 0.95047 0.94749 0.99109 0.92007 0.93331 0.93326 0.92435 0.89700 0.94422 0.94399 0.80116 0.90683 0.89921 0.90870 0.90213 0.91700 0.88932 0.88485 0.88795 0.90061 0.86898 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.49 37.16 0.35 -1.73 16 2 C -0.12 -1.83 4.75 -26.73 -0.13 -1.95 16 3 C 0.17 2.50 0.49 -130.84 -0.06 2.44 16 4 C 0.07 1.02 5.96 37.16 0.22 1.24 16 5 O -0.52 -8.76 9.05 -60.08 -0.54 -9.30 16 6 C -0.13 -1.37 5.84 -24.89 -0.15 -1.51 16 7 C -0.14 -1.55 7.10 -24.47 -0.17 -1.72 16 8 C 0.10 1.44 4.87 -2.41 -0.01 1.43 16 9 N -0.61 -10.81 1.74 -156.86 -0.27 -11.08 16 10 C 0.58 12.81 7.19 -12.42 -0.09 12.72 16 11 O -0.53 -12.67 12.18 -19.56 -0.24 -12.91 16 12 C -0.29 -6.89 5.87 -104.73 -0.61 -7.51 16 13 C -0.02 -0.45 9.52 -39.61 -0.38 -0.82 16 14 C -0.25 -6.27 9.73 -39.27 -0.38 -6.65 16 15 C 0.12 3.22 5.67 -106.81 -0.61 2.61 16 16 C -0.45 -11.29 8.96 -37.75 -0.34 -11.63 16 17 H 0.09 2.12 8.04 -52.49 -0.42 1.70 16 18 C 0.09 2.04 4.82 -17.31 -0.08 1.96 16 19 N -0.74 -17.60 11.34 55.56 0.63 -16.97 16 20 Si 0.90 17.15 29.68 -169.99 -5.04 12.10 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 C -0.20 -5.10 8.82 -39.27 -0.35 -5.45 16 25 C -0.09 -1.96 8.19 -39.61 -0.32 -2.28 16 26 H 0.06 1.03 7.09 -51.93 -0.37 0.67 16 27 H 0.05 0.57 6.52 -51.93 -0.34 0.23 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.57 6.57 -51.93 -0.34 1.22 16 31 H 0.04 0.43 8.13 -51.92 -0.42 0.01 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.35 4.47 9.12 45.56 0.42 4.89 16 34 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 35 H 0.08 0.83 6.10 -51.93 -0.32 0.51 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.94 7.33 -51.93 -0.38 0.56 16 39 H 0.09 1.55 5.95 -51.93 -0.31 1.24 16 40 H 0.10 2.33 7.67 -52.48 -0.40 1.93 16 41 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 42 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 43 H 0.11 2.83 5.95 -52.49 -0.31 2.52 16 44 H 0.12 2.27 3.33 -52.51 -0.17 2.10 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -29.99 339.28 -8.92 -38.91 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.45 Total: 12.99 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -3.11 Total: -18.85 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.36 Total: -28.05 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.78 Total: -22.21 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.04 Total: 12.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.99 -8.92 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275889643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.025 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds