Wall clock time and date at job start Tue Mar 31 2020 09:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46629 * 2 1 4 4 C 1.52999 * 109.99598 * 174.87591 * 3 2 1 5 5 O 1.42898 * 109.47112 * 303.18015 * 4 3 2 6 6 C 1.54328 * 109.87946 * 295.96627 * 3 2 1 7 7 C 1.55156 * 102.93747 * 141.61352 * 6 3 2 8 8 C 1.55126 * 101.48865 * 324.33295 * 7 6 3 9 9 N 1.47022 * 109.88314 * 53.77815 * 3 2 1 10 10 C 1.34773 * 125.64705 * 61.61036 * 9 3 2 11 11 O 1.21587 * 120.00468 * 5.30297 * 10 9 3 12 12 C 1.47647 * 119.99747 * 185.31242 * 10 9 3 13 13 C 1.40009 * 119.89461 * 190.41190 * 12 10 9 14 14 C 1.36316 * 120.10689 * 179.97438 * 13 12 10 15 15 C 1.40886 * 119.89318 * 0.02562 * 14 13 12 16 16 C 1.41106 * 120.10524 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00035 * 348.70585 * 16 15 14 18 18 C 1.40227 * 120.00034 * 168.70911 * 16 15 14 19 19 N 1.30649 * 119.99942 * 324.02734 * 18 16 15 20 20 Si 1.86799 * 119.99919 * 144.02879 * 18 16 15 21 21 H 1.48495 * 109.47448 * 265.00159 * 20 18 16 22 22 H 1.48499 * 109.47172 * 25.00400 * 20 18 16 23 23 H 1.48503 * 109.46769 * 145.00066 * 20 18 16 24 24 C 1.40885 * 119.79063 * 0.25337 * 15 14 13 25 25 C 1.36322 * 119.89078 * 359.46434 * 24 15 14 26 26 H 1.09003 * 109.47349 * 306.55359 * 1 2 3 27 27 H 1.08990 * 109.47279 * 66.55849 * 1 2 3 28 28 H 1.09002 * 109.46706 * 186.55915 * 1 2 3 29 29 H 1.08995 * 109.47087 * 240.00125 * 2 1 3 30 30 H 1.09001 * 109.47206 * 119.99265 * 2 1 3 31 31 H 1.09009 * 109.47145 * 63.17437 * 4 3 2 32 32 H 1.08994 * 109.47498 * 183.17799 * 4 3 2 33 33 H 0.96705 * 114.00266 * 180.02562 * 5 4 3 34 34 H 1.08999 * 110.72012 * 259.97831 * 6 3 2 35 35 H 1.08999 * 110.71801 * 23.07721 * 6 3 2 36 36 H 1.09000 * 111.00554 * 82.57365 * 7 6 3 37 37 H 1.09002 * 111.00073 * 206.38704 * 7 6 3 38 38 H 1.09000 * 110.49767 * 278.45369 * 8 7 6 39 39 H 1.08999 * 110.34568 * 156.05748 * 8 7 6 40 40 H 1.08004 * 119.94949 * 0.02562 * 13 12 10 41 41 H 1.08006 * 120.05503 * 179.97438 * 14 13 12 42 42 H 0.96999 * 119.99907 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.05591 * 179.74542 * 24 15 14 44 44 H 1.08008 * 119.94461 * 180.30078 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5644 1.4587 0.1284 5 8 3.9500 0.7603 1.3140 6 6 1.6157 2.1492 -1.3048 7 6 1.2621 3.5817 -0.8250 8 6 0.6367 3.2962 0.5656 9 7 1.4363 2.1863 1.1154 10 6 1.5848 1.8978 2.4234 11 8 2.3426 1.0117 2.7684 12 6 0.8270 2.6575 3.4376 13 6 1.1382 2.5122 4.7949 14 6 0.4417 3.2120 5.7349 15 6 -0.5930 4.0821 5.3386 16 6 -1.3172 4.8082 6.3079 17 1 -1.2091 4.5675 7.3551 18 6 -2.1774 5.8422 5.9113 19 7 -1.8594 6.6044 4.8990 20 14 -3.7779 6.1299 6.8305 21 1 -4.8826 5.4228 6.1343 22 1 -3.6533 5.6104 8.2161 23 1 -4.0702 7.5853 6.8719 24 6 -0.9064 4.2205 3.9721 25 6 -0.2005 3.5209 3.0390 26 1 -0.3634 0.6121 0.8255 27 1 -0.3633 0.4088 -0.9427 28 1 -0.3633 -1.0210 0.1174 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 4.0074 0.9716 -0.7404 32 1 3.9136 2.4897 0.1843 33 1 4.9055 0.7308 1.4601 34 1 2.4412 2.1734 -2.0162 35 1 0.7453 1.6604 -1.7426 36 1 2.1580 4.1960 -0.7355 37 1 0.5357 4.0484 -1.4904 38 1 -0.4062 2.9969 0.4609 39 1 0.7176 4.1751 1.2052 40 1 1.9319 1.8453 5.0977 41 1 0.6822 3.0989 6.7817 42 1 -2.4542 7.3199 4.6249 43 1 -1.7015 4.8832 3.6639 44 1 -0.4368 3.6301 1.9907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275889643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:01 Heat of formation + Delta-G solvation = -63.679526 kcal Electronic energy + Delta-G solvation = -25856.115036 eV Core-core repulsion = 22351.971583 eV Total energy + Delta-G solvation = -3504.143453 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59118 -39.45130 -38.09385 -37.05191 -35.76126 -34.24926 -32.68462 -31.56034 -31.27488 -30.09726 -27.68051 -26.20536 -24.59051 -23.76401 -23.23902 -22.39077 -21.40330 -19.41936 -19.19086 -18.25250 -17.52669 -17.27965 -17.05600 -16.43615 -16.01965 -15.58505 -15.43596 -15.06764 -14.81299 -14.57264 -14.48941 -14.22800 -14.03902 -13.76640 -13.62078 -13.31301 -13.08979 -12.97217 -12.90983 -12.80322 -12.59253 -12.34614 -12.16182 -12.06676 -11.93285 -11.69988 -11.48997 -11.33262 -11.16856 -10.79746 -10.65341 -10.20073 -9.58146 -9.51704 -9.29101 -8.95471 -6.41986 0.59597 1.18726 1.34766 1.43900 1.52327 2.13011 2.22089 2.30814 2.78347 3.41267 3.63441 3.70277 3.75457 4.01493 4.16893 4.23247 4.31377 4.34734 4.43693 4.48060 4.51203 4.54792 4.64045 4.68545 4.74005 4.86374 4.93871 4.98577 5.01692 5.05103 5.12437 5.16877 5.20491 5.28008 5.35085 5.40419 5.47034 5.58575 5.75865 5.93527 6.00471 6.10317 6.21834 6.53520 6.76217 6.88318 6.96026 7.06354 7.75185 8.00555 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022824 B = 0.004024 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.499980 B = 6956.768737 C = 7482.043796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.158 3.842 4 C 0.067 3.933 5 O -0.553 6.553 6 C -0.113 4.113 7 C -0.125 4.125 8 C 0.083 3.917 9 N -0.609 5.609 10 C 0.575 3.425 11 O -0.555 6.555 12 C -0.306 4.306 13 C -0.031 4.031 14 C -0.269 4.269 15 C 0.096 3.904 16 C -0.476 4.476 17 H 0.083 0.917 18 C 0.053 3.947 19 N -0.767 5.767 20 Si 0.980 3.020 21 H -0.259 1.259 22 H -0.257 1.257 23 H -0.258 1.258 24 C -0.225 4.225 25 C -0.077 4.077 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.368 0.632 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.303 0.697 43 H 0.110 0.890 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -2.402 -15.434 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.073 3.927 4 C -0.012 4.012 5 O -0.357 6.357 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.039 4.039 9 N -0.344 5.344 10 C 0.369 3.631 11 O -0.435 6.435 12 C -0.310 4.310 13 C -0.050 4.050 14 C -0.288 4.288 15 C 0.093 3.907 16 C -0.501 4.501 17 H 0.101 0.899 18 C -0.171 4.171 19 N -0.388 5.388 20 Si 0.799 3.201 21 H -0.183 1.183 22 H -0.181 1.181 23 H -0.182 1.182 24 C -0.244 4.244 25 C -0.095 4.095 26 H 0.047 0.953 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.214 0.786 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.584 -2.740 -15.266 15.590 hybrid contribution 0.260 0.258 1.061 1.122 sum 1.844 -2.482 -14.205 14.538 Atomic orbital electron populations 1.21722 0.95433 1.01075 1.01815 1.21683 0.96298 0.95850 1.01963 1.21309 0.91505 0.92556 0.87305 1.22638 0.94755 0.95357 0.88427 1.87154 1.27160 1.77778 1.43598 1.22744 1.03754 0.94776 0.93826 1.22885 1.01966 0.97022 0.94361 1.22906 0.95289 0.89814 0.95890 1.48263 1.50821 1.31243 1.04026 1.18051 0.80846 0.82752 0.81464 1.90687 1.38814 1.33781 1.80215 1.19243 1.07626 1.11139 0.92979 1.20426 0.96451 0.95404 0.92693 1.20671 1.02831 1.07578 0.97704 1.18047 0.88906 0.90099 0.93685 1.20084 1.21170 1.13442 0.95417 0.89898 1.26981 1.02154 0.92643 0.95360 1.69840 1.35746 1.10499 1.22713 0.85229 0.76324 0.78898 0.79669 1.18303 1.18086 1.18170 1.20968 1.04368 1.06066 0.93001 1.21827 0.93814 0.93288 1.00521 0.95295 0.90209 0.93032 0.89421 0.94167 0.90960 0.94667 0.78578 0.87641 0.88278 0.90673 0.87070 0.90898 0.91095 0.88830 0.88514 0.88561 0.87169 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.49 71.98 0.68 -3.09 16 2 C -0.12 -3.33 4.75 30.60 0.15 -3.19 16 3 C 0.16 4.23 0.49 3.96 0.00 4.24 16 4 C 0.07 1.77 5.96 71.98 0.43 2.20 16 5 O -0.55 -18.76 9.05 -125.22 -1.13 -19.89 16 6 C -0.11 -1.92 5.84 31.78 0.19 -1.74 16 7 C -0.12 -2.29 7.10 32.06 0.23 -2.06 16 8 C 0.08 2.36 4.87 86.93 0.42 2.78 16 9 N -0.61 -21.09 1.74 -768.44 -1.34 -22.43 16 10 C 0.57 26.15 7.19 86.73 0.62 26.77 16 11 O -0.55 -27.87 12.18 19.77 0.24 -27.63 16 12 C -0.31 -15.14 5.87 -19.93 -0.12 -15.26 16 13 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 14 C -0.27 -14.31 9.73 22.47 0.22 -14.10 16 15 C 0.10 5.22 5.67 -21.28 -0.12 5.10 16 16 C -0.48 -24.85 8.96 23.46 0.21 -24.64 16 17 H 0.08 4.23 8.04 -2.91 -0.02 4.20 16 18 C 0.05 2.46 4.82 85.35 0.41 2.88 16 19 N -0.77 -36.23 11.34 21.87 0.25 -35.98 16 20 Si 0.98 34.65 29.68 68.60 2.04 36.68 16 21 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 23 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 24 C -0.22 -11.61 8.82 22.47 0.20 -11.41 16 25 C -0.08 -3.59 8.19 22.25 0.18 -3.41 16 26 H 0.03 0.94 7.09 -2.39 -0.02 0.92 16 27 H 0.08 1.58 6.52 -2.39 -0.02 1.56 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.49 6.57 -2.39 -0.02 1.48 16 31 H 0.07 1.40 8.13 -2.38 -0.02 1.38 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.37 9.41 9.12 -74.05 -0.68 8.74 16 34 H 0.11 1.25 7.82 -2.39 -0.02 1.23 16 35 H 0.10 1.41 6.10 -2.39 -0.01 1.39 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.96 7.33 -2.39 -0.02 1.95 16 39 H 0.07 2.33 5.95 -2.39 -0.01 2.31 16 40 H 0.09 4.82 7.67 -2.91 -0.02 4.80 16 41 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.30 12.39 8.29 -92.71 -0.77 11.62 16 43 H 0.11 5.64 5.95 -2.91 -0.02 5.62 16 44 H 0.15 5.81 3.33 -2.93 -0.01 5.80 16 Total: -1.00 -69.45 339.28 4.32 -65.13 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: 0.35 Total: 40.43 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.92 Total: -36.32 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -1.09 Total: -58.41 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.89 Total: -47.52 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.04 Total: 36.68 kcal Total: -69.45 4.32 -65.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275889643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.452 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds