Wall clock time and date at job start Tue Mar 31 2020 07:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.52506 * 2 1 4 4 C 1.53193 * 109.49957 * 239.92018 * 2 1 3 5 5 N 1.47205 * 108.85550 * 294.69873 * 4 2 1 6 6 C 1.34773 * 120.81483 * 126.33872 * 5 4 2 7 7 O 1.21578 * 120.00028 * 354.27756 * 6 5 4 8 8 C 1.47644 * 119.99739 * 174.27236 * 6 5 4 9 9 C 1.40011 * 119.89766 * 324.54776 * 8 6 5 10 10 C 1.36322 * 120.10394 * 179.71527 * 9 8 6 11 11 C 1.40890 * 119.89189 * 0.57618 * 10 9 8 12 12 C 1.41108 * 120.10141 * 179.67628 * 11 10 9 13 13 H 1.08004 * 119.99972 * 156.52517 * 12 11 10 14 14 C 1.40222 * 120.00136 * 336.51949 * 12 11 10 15 15 N 1.30648 * 119.99947 * 340.34959 * 14 12 11 16 16 Si 1.86799 * 120.00225 * 160.34753 * 14 12 11 17 17 H 1.48507 * 109.47121 * 94.75498 * 16 14 12 18 18 H 1.48501 * 109.47513 * 214.75822 * 16 14 12 19 19 H 1.48502 * 109.47056 * 334.76024 * 16 14 12 20 20 C 1.40885 * 119.79426 * 359.69609 * 11 10 9 21 21 C 1.36323 * 119.89223 * 359.97438 * 20 11 10 22 22 C 1.46929 * 118.55252 * 306.48030 * 5 4 2 23 23 C 1.53187 * 108.89570 * 53.53572 * 22 5 4 24 24 C 1.53037 * 109.49974 * 120.07745 * 2 1 3 25 25 H 1.09002 * 109.46308 * 178.60438 * 24 2 1 26 26 O 1.42899 * 109.45135 * 298.57742 * 24 2 1 27 27 H 1.08999 * 109.47437 * 299.91707 * 1 2 3 28 28 H 1.09002 * 109.47650 * 59.92150 * 1 2 3 29 29 H 1.09003 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47441 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46513 * 300.08388 * 3 2 1 32 32 H 1.08999 * 109.47139 * 60.07895 * 3 2 1 33 33 H 1.09003 * 109.58421 * 54.46806 * 4 2 1 34 34 H 1.09004 * 109.58721 * 174.74971 * 4 2 1 35 35 H 1.07997 * 119.94651 * 359.97438 * 9 8 6 36 36 H 1.07996 * 120.05387 * 180.29543 * 10 9 8 37 37 H 0.97004 * 120.00165 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.05611 * 179.97438 * 20 11 10 39 39 H 1.07995 * 119.94640 * 179.97438 * 21 20 11 40 40 H 1.09002 * 109.58305 * 293.67479 * 22 5 4 41 41 H 1.09001 * 109.58690 * 173.40022 * 22 5 4 42 42 H 1.09006 * 109.49894 * 65.24401 * 23 22 5 43 43 H 1.09001 * 109.50053 * 185.31103 * 23 22 5 44 44 H 0.96704 * 113.99979 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 1.6514 -2.1411 -1.1714 6 6 0.9740 -2.7273 -2.1784 7 8 0.5867 -2.0616 -3.1191 8 6 0.7024 -4.1780 -2.1390 9 6 1.6489 -5.0506 -1.5887 10 6 1.4000 -6.3902 -1.5449 11 6 0.1931 -6.8974 -2.0657 12 6 -0.0662 -8.2840 -2.0289 13 1 -1.0839 -8.6441 -2.0603 14 6 0.9975 -9.1944 -1.9517 15 7 2.2022 -8.8220 -2.2938 16 14 0.6922 -10.9396 -1.3596 17 1 0.4753 -11.8284 -2.5294 18 1 1.8696 -11.4141 -0.5890 19 1 -0.5111 -10.9638 -0.4897 20 6 -0.7538 -6.0160 -2.6237 21 6 -0.4989 -4.6773 -2.6569 22 6 2.0140 -2.9040 0.0308 23 6 1.5031 -2.1558 1.2660 24 6 2.0408 -0.7230 1.2483 25 1 3.1305 -0.7443 1.2353 26 8 1.5921 -0.0317 2.4157 27 1 -0.3634 0.5125 0.8907 28 1 -0.3634 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1313 1.4411 -0.0005 31 1 1.6772 1.9566 -0.8893 32 1 1.6796 1.9559 0.8907 33 1 1.6007 -0.2731 -2.1389 34 1 3.1273 -0.6440 -1.2994 35 1 2.5760 -4.6614 -1.1944 36 1 2.1286 -7.0620 -1.1159 37 1 2.9381 -9.4517 -2.2400 38 1 -1.6801 -6.4003 -3.0244 39 1 -1.2240 -4.0009 -3.0848 40 1 3.0980 -3.0042 0.0867 41 1 1.5575 -3.8928 -0.0124 42 1 0.4133 -2.1354 1.2541 43 1 1.8477 -2.6631 2.1671 44 1 1.8796 -0.4347 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275947348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:37 Heat of formation + Delta-G solvation = -88.107414 kcal Electronic energy + Delta-G solvation = -25387.634151 eV Core-core repulsion = 21882.431426 eV Total energy + Delta-G solvation = -3505.202725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.64595 -39.82793 -38.74412 -36.65566 -35.78360 -35.04505 -32.14346 -32.01394 -31.35411 -28.48755 -28.22934 -27.08312 -25.84422 -23.62450 -23.24920 -22.65449 -20.69823 -19.57969 -19.31560 -18.30223 -17.89285 -17.43258 -16.98681 -16.29704 -15.97410 -15.87516 -15.43986 -15.24114 -14.98190 -14.57989 -14.43373 -14.36090 -14.13915 -13.87429 -13.70122 -13.30719 -13.14407 -13.00358 -12.90331 -12.82207 -12.64591 -12.55169 -12.38673 -12.34533 -11.96788 -11.86417 -11.77572 -11.36318 -11.16321 -11.10082 -10.79647 -10.55025 -9.66400 -9.49255 -9.35867 -8.79065 -6.45983 0.52026 1.12502 1.39245 1.43084 1.55607 1.99112 2.15296 2.18098 2.69902 3.29250 3.56472 3.63915 3.72764 3.92743 4.02837 4.11367 4.21771 4.29814 4.35217 4.40935 4.45816 4.66629 4.67931 4.75129 4.76873 4.87762 4.89949 4.94593 4.95330 5.03649 5.04645 5.16690 5.17901 5.20684 5.29750 5.38680 5.42956 5.57924 5.65996 5.81909 5.97159 6.00255 6.23057 6.50481 6.55010 6.78888 6.89760 6.96590 7.34693 8.16598 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.003566 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.798805 B = 7850.718655 C = 8387.390386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.128 4.128 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.575 3.425 7 O -0.604 6.604 8 C -0.289 4.289 9 C -0.054 4.054 10 C -0.197 4.197 11 C 0.102 3.898 12 C -0.477 4.477 13 H 0.084 0.916 14 C 0.041 3.959 15 N -0.798 5.798 16 Si 0.985 3.015 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.257 1.257 20 C -0.253 4.253 21 C -0.038 4.038 22 C 0.094 3.906 23 C -0.163 4.163 24 C 0.125 3.875 25 H 0.074 0.926 26 O -0.572 6.572 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.297 0.703 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 9.790 11.091 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.186 4.186 4 C -0.003 4.003 5 N -0.339 5.339 6 C 0.369 3.631 7 O -0.487 6.487 8 C -0.293 4.293 9 C -0.073 4.073 10 C -0.216 4.216 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.422 5.422 16 Si 0.805 3.195 17 H -0.188 1.188 18 H -0.184 1.184 19 H -0.180 1.180 20 C -0.272 4.272 21 C -0.057 4.057 22 C -0.028 4.028 23 C -0.202 4.202 24 C 0.066 3.934 25 H 0.092 0.908 26 O -0.380 6.380 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.756 10.457 10.131 15.317 hybrid contribution -0.159 -1.220 0.050 1.231 sum 4.597 9.237 10.181 14.495 Atomic orbital electron populations 1.21708 0.95030 1.00673 1.01146 1.20877 0.96026 0.96752 0.93250 1.21678 1.01462 0.93214 1.02245 1.21794 1.00134 0.80022 0.98306 1.47986 1.56439 1.11328 1.18145 1.18562 0.75735 0.87631 0.81190 1.90610 1.54878 1.66638 1.36602 1.19087 0.99990 0.91439 1.18781 1.20802 0.97227 0.93050 0.96213 1.20996 0.99843 0.94175 1.06610 1.18084 0.91584 0.93728 0.86743 1.20080 0.95102 0.91433 1.43806 0.89838 1.26898 0.93706 1.05759 0.91467 1.69776 1.02239 1.39495 1.30645 0.85141 0.79726 0.75298 0.79342 1.18800 1.18447 1.18037 1.20798 1.02369 0.93246 1.10783 1.20419 0.95313 0.94791 0.95155 1.22279 1.01092 0.96497 0.82974 1.22700 1.01844 0.96957 0.98667 1.21642 0.97369 0.89292 0.85137 0.90797 1.86466 1.79312 1.55733 1.16509 0.91660 0.93981 0.94552 0.91228 0.92665 0.91520 0.90853 0.89600 0.85679 0.86773 0.89186 0.88030 0.88571 0.89402 0.88828 0.92359 0.87843 0.75678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 7.85 71.98 0.57 -2.92 16 2 C -0.07 -1.56 0.60 -52.10 -0.03 -1.59 16 3 C -0.13 -2.41 8.32 71.99 0.60 -1.81 16 4 C 0.12 3.27 5.13 86.31 0.44 3.71 16 5 N -0.61 -19.83 2.43 -821.82 -1.99 -21.82 16 6 C 0.57 24.64 7.37 86.73 0.64 25.28 16 7 O -0.60 -29.60 16.25 -3.96 -0.06 -29.66 16 8 C -0.29 -13.23 5.31 -19.93 -0.11 -13.34 16 9 C -0.05 -2.37 7.27 22.25 0.16 -2.20 16 10 C -0.20 -9.60 8.65 22.47 0.19 -9.40 16 11 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 12 C -0.48 -24.02 9.04 23.46 0.21 -23.81 16 13 H 0.08 4.05 7.92 -2.91 -0.02 4.02 16 14 C 0.04 1.89 5.10 85.35 0.44 2.32 16 15 N -0.80 -37.99 10.99 21.87 0.24 -37.75 16 16 Si 0.99 34.41 29.60 68.60 2.03 36.45 16 17 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 18 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 19 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 20 C -0.25 -12.58 9.73 22.47 0.22 -12.36 16 21 C -0.04 -1.82 9.54 22.25 0.21 -1.61 16 22 C 0.09 2.48 4.75 86.36 0.41 2.89 16 23 C -0.16 -3.46 5.36 30.67 0.16 -3.29 16 24 C 0.12 2.34 2.56 30.62 0.08 2.42 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 O -0.57 -9.84 11.98 -148.98 -1.78 -11.63 16 27 H 0.06 1.66 7.72 -2.39 -0.02 1.64 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.14 5.97 -2.39 -0.01 1.13 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 33 H 0.07 2.35 7.02 -2.39 -0.02 2.34 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.13 4.62 6.03 -2.91 -0.02 4.60 16 36 H 0.11 5.62 6.14 -2.91 -0.02 5.60 16 37 H 0.30 12.51 8.29 -92.71 -0.77 11.74 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.10 4.52 7.99 -2.91 -0.02 4.49 16 40 H 0.09 1.90 8.04 -2.39 -0.02 1.88 16 41 H 0.09 2.96 4.46 -2.39 -0.01 2.94 16 42 H 0.06 1.51 6.33 -2.38 -0.02 1.50 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.39 3.43 9.08 -74.05 -0.67 2.75 16 Total: -1.00 -63.54 344.31 2.85 -60.69 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.35 Total: 34.29 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.08 Total: -30.56 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -1.75 Total: -59.57 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.85 Total: -41.29 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.45 kcal Total: -63.54 2.85 -60.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275947348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.417 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds