Wall clock time and date at job start Tue Mar 31 2020 09:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 C 1.52995 * 109.46919 * 180.02562 * 3 2 1 5 5 N 1.46504 * 110.45794 * 305.69775 * 4 3 2 6 6 C 1.34770 * 119.99827 * 181.90944 * 5 4 3 7 7 O 1.21547 * 120.00628 * 0.27275 * 6 5 4 8 8 C 1.47886 * 119.99710 * 179.97438 * 6 5 4 9 9 C 1.39916 * 120.02964 * 359.72585 * 8 6 5 10 10 C 1.38329 * 120.36243 * 179.76399 * 9 8 6 11 11 C 1.37742 * 120.40922 * 0.51284 * 10 9 8 12 12 C 1.40751 * 120.04420 * 359.74176 * 11 10 9 13 13 C 1.41430 * 120.18008 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99817 * 334.96747 * 13 12 11 15 15 C 1.39941 * 120.00412 * 154.97283 * 13 12 11 16 16 N 1.30826 * 119.99473 * 342.58353 * 15 13 12 17 17 Si 1.86804 * 120.00164 * 162.58106 * 15 13 12 18 18 H 1.48497 * 109.46929 * 90.00137 * 17 15 13 19 19 H 1.48496 * 109.46770 * 210.00201 * 17 15 13 20 20 H 1.48495 * 109.47060 * 330.00116 * 17 15 13 21 21 C 1.38999 * 120.02565 * 179.97438 * 8 6 5 22 22 C 1.54516 * 110.62655 * 183.01647 * 4 3 2 23 23 C 1.54477 * 104.06287 * 241.29689 * 22 4 3 24 24 O 1.44427 * 104.80348 * 336.02041 * 23 22 4 25 25 C 1.44427 * 105.27391 * 40.51018 * 24 23 22 26 26 H 1.08999 * 109.46879 * 299.99632 * 1 2 3 27 27 H 1.08995 * 109.47230 * 59.99962 * 1 2 3 28 28 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46888 * 240.00136 * 2 1 3 30 30 H 1.08995 * 109.47400 * 120.00565 * 2 1 3 31 31 H 1.08995 * 109.47020 * 59.99860 * 3 2 1 32 32 H 1.09004 * 109.46932 * 300.00216 * 3 2 1 33 33 H 0.96994 * 119.99552 * 1.90358 * 5 4 3 34 34 H 1.08004 * 119.81444 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.79378 * 180.25666 * 10 9 8 36 36 H 1.07999 * 119.98129 * 179.76851 * 11 10 9 37 37 H 0.97002 * 119.99718 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.20252 * 359.97438 * 21 8 6 39 39 H 1.09007 * 110.50833 * 359.93888 * 22 4 3 40 40 H 1.08995 * 110.51578 * 122.64954 * 22 4 3 41 41 H 1.08998 * 110.37286 * 217.18982 * 23 22 4 42 42 H 1.09005 * 110.46620 * 94.90033 * 23 22 4 43 43 H 1.09001 * 110.36830 * 200.65492 * 25 24 23 44 44 H 1.09001 * 110.36725 * 78.32494 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0825 0.6413 1.1137 6 6 5.4110 0.5423 1.3174 7 8 6.1840 1.1216 0.5797 8 6 5.9283 -0.2660 2.4427 9 6 5.0388 -0.9234 3.2996 10 6 5.5153 -1.6852 4.3513 11 6 6.8700 -1.7970 4.5737 12 6 7.7801 -1.1385 3.7255 13 6 9.1716 -1.2508 3.9515 14 1 9.5418 -1.4727 4.9417 15 6 10.0691 -1.0744 2.8924 16 7 9.6449 -1.1459 1.6569 17 14 11.8727 -0.7368 3.2427 18 1 12.6099 -2.0231 3.3261 19 1 12.4428 0.0906 2.1493 20 1 11.9989 -0.0094 4.5312 21 6 7.2984 -0.3689 2.6530 22 6 4.1145 2.8865 0.0754 23 6 4.9197 3.0534 -1.2322 24 8 5.2812 1.7091 -1.6172 25 6 4.1108 0.9078 -1.3452 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.4656 0.1822 1.7049 34 1 3.9745 -0.8384 3.1369 35 1 4.8206 -2.1922 5.0046 36 1 7.2343 -2.3905 5.3992 37 1 10.2669 -1.0232 0.9227 38 1 7.9887 0.1398 1.9963 39 1 3.2935 3.6027 0.1125 40 1 4.7648 3.0043 0.9421 41 1 5.8140 3.6504 -1.0536 42 1 4.3032 3.5161 -2.0030 43 1 4.3838 -0.1435 -1.2535 44 1 3.3687 1.0407 -2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287741627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:22 Heat of formation + Delta-G solvation = -70.955358 kcal Electronic energy + Delta-G solvation = -25409.812588 eV Core-core repulsion = 21905.353632 eV Total energy + Delta-G solvation = -3504.458956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 13.01 seconds Orbital eigenvalues (eV) -40.40040 -38.16241 -36.71550 -35.77189 -33.73342 -33.05461 -31.13777 -29.81566 -29.37929 -28.76981 -26.01766 -25.27415 -23.24457 -22.66281 -21.42629 -20.94293 -19.98228 -19.10394 -17.76155 -16.58548 -15.96919 -15.59103 -15.49200 -14.98704 -14.73913 -14.61837 -14.46726 -13.97672 -13.72277 -13.32536 -13.09093 -12.90263 -12.63881 -12.44226 -12.43962 -12.29467 -11.70176 -11.60690 -11.39541 -11.21017 -11.12004 -11.06997 -11.03171 -10.71365 -10.61689 -10.56267 -10.45856 -9.95541 -9.65935 -9.51969 -9.18112 -8.79313 -8.46779 -7.58779 -7.48671 -6.76621 -4.38593 2.27898 2.84298 3.09796 3.12849 3.18406 3.65287 3.90834 3.95047 4.20925 4.55941 4.64466 4.72356 4.81009 5.03425 5.05823 5.24408 5.31424 5.35818 5.46399 5.59019 5.62640 5.64404 5.64944 5.77488 5.85309 5.91688 5.96987 6.04259 6.07069 6.11783 6.14729 6.28128 6.30635 6.74565 6.96587 7.02331 7.06021 7.18514 7.24571 7.41910 7.73508 7.80132 7.96032 8.15490 8.23951 8.54053 8.83515 8.86960 9.09929 10.17939 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.004318 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.491786 B = 6483.546140 C = 7677.751223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.113 4.113 4 C 0.147 3.853 5 N -0.729 5.729 6 C 0.555 3.445 7 O -0.512 6.512 8 C -0.126 4.126 9 C -0.220 4.220 10 C -0.098 4.098 11 C -0.214 4.214 12 C 0.100 3.900 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.781 5.781 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.092 4.092 22 C -0.154 4.154 23 C 0.057 3.943 24 O -0.343 6.343 25 C 0.045 3.955 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.397 0.603 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.285 0.715 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.359 5.012 -4.196 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.151 4.151 4 C 0.060 3.940 5 N -0.385 5.385 6 C 0.344 3.656 7 O -0.387 6.387 8 C -0.130 4.130 9 C -0.240 4.240 10 C -0.116 4.116 11 C -0.234 4.234 12 C 0.097 3.903 13 C -0.490 4.490 14 H 0.098 0.902 15 C -0.146 4.146 16 N -0.406 5.406 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.112 4.112 22 C -0.193 4.193 23 C -0.020 4.020 24 O -0.261 6.261 25 C -0.033 4.033 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.480 5.368 -5.085 15.375 hybrid contribution 0.217 -0.150 0.520 0.583 sum -13.263 5.218 -4.565 14.965 Atomic orbital electron populations 1.21764 0.95629 1.01749 1.01685 1.21574 0.95873 0.96403 1.02814 1.21838 0.92319 0.97842 1.03127 1.21581 0.93222 0.91093 0.88124 1.46108 1.07683 1.53065 1.31595 1.18851 0.81285 0.80660 0.84781 1.90808 1.56215 1.45316 1.46349 1.19536 0.95080 1.01956 0.96395 1.20325 0.96052 1.07376 1.00285 1.20419 0.95152 0.98922 0.97134 1.21082 0.92723 1.05542 1.04061 1.17597 0.93297 0.88777 0.90623 1.19574 0.90622 1.42795 0.96044 0.90177 1.25954 1.01720 0.92422 0.94458 1.69788 1.37791 1.33268 0.99704 0.86305 0.81629 0.79299 0.79507 1.19468 1.19945 1.18421 1.21630 0.92251 0.98197 0.99153 1.23262 1.00018 0.95429 1.00595 1.23154 0.98984 0.86219 0.93678 1.89284 1.33938 1.17844 1.85028 1.23716 0.88366 0.97226 0.94013 0.92715 0.92828 0.92632 0.91545 0.91549 0.90953 0.90425 0.76659 0.89485 0.89056 0.88730 0.90423 0.84860 0.90935 0.89716 0.89546 0.93490 0.89350 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.19 5.57 -26.73 -0.15 -1.34 16 3 C -0.11 -1.09 4.13 -26.73 -0.11 -1.20 16 4 C 0.15 2.00 0.87 -130.25 -0.11 1.89 16 5 N -0.73 -11.79 4.82 -47.08 -0.23 -12.01 16 6 C 0.55 11.92 6.89 -12.31 -0.08 11.83 16 7 O -0.51 -12.47 12.30 -17.33 -0.21 -12.69 16 8 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 9 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 10 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 11 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 12 C 0.10 2.66 5.57 -106.87 -0.59 2.06 16 13 C -0.46 -12.26 9.05 -37.73 -0.34 -12.60 16 14 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 15 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 16 N -0.78 -21.01 10.97 55.55 0.61 -20.40 16 17 Si 0.91 19.02 29.59 -169.99 -5.03 13.99 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.09 -2.47 8.23 -38.44 -0.32 -2.79 16 22 C -0.15 -2.15 5.75 -25.16 -0.14 -2.30 16 23 C 0.06 0.84 7.29 37.93 0.28 1.12 16 24 O -0.34 -6.37 9.68 -57.89 -0.56 -6.93 16 25 C 0.05 0.68 5.48 37.93 0.21 0.89 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.64 7.55 -51.92 -0.39 0.25 16 30 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.64 8.01 -51.93 -0.42 0.23 16 33 H 0.40 5.66 5.01 -40.82 -0.20 5.46 16 34 H 0.09 1.51 6.38 -52.48 -0.33 1.18 16 35 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.28 7.07 8.30 -40.82 -0.34 6.74 16 38 H 0.13 3.89 5.76 -52.48 -0.30 3.59 16 39 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 40 H 0.08 1.43 6.91 -51.93 -0.36 1.07 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 44 H 0.06 0.69 7.78 -51.93 -0.40 0.28 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -30.45 348.71 -9.53 -39.98 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.51 Total: 10.85 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -2.86 Total: -18.05 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.38 Total: -32.42 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.77 Total: -19.61 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.45 -9.53 -39.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287741627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.977 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.01 seconds