Wall clock time and date at job start Tue Mar 31 2020 09:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47276 * 2 1 4 4 C 1.52995 * 109.46919 * 180.02562 * 3 2 1 5 5 N 1.46504 * 110.45794 * 305.69775 * 4 3 2 6 6 C 1.34770 * 119.99827 * 181.90944 * 5 4 3 7 7 O 1.21547 * 120.00628 * 0.27275 * 6 5 4 8 8 C 1.47886 * 119.99710 * 179.97438 * 6 5 4 9 9 C 1.39916 * 120.02964 * 359.72585 * 8 6 5 10 10 C 1.38329 * 120.36243 * 179.76399 * 9 8 6 11 11 C 1.37742 * 120.40922 * 0.51284 * 10 9 8 12 12 C 1.40751 * 120.04420 * 359.74176 * 11 10 9 13 13 C 1.41430 * 120.18008 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99817 * 334.96747 * 13 12 11 15 15 C 1.39941 * 120.00412 * 154.97283 * 13 12 11 16 16 N 1.30826 * 119.99473 * 342.58353 * 15 13 12 17 17 Si 1.86804 * 120.00164 * 162.58106 * 15 13 12 18 18 H 1.48497 * 109.46929 * 90.00137 * 17 15 13 19 19 H 1.48496 * 109.46770 * 210.00201 * 17 15 13 20 20 H 1.48495 * 109.47060 * 330.00116 * 17 15 13 21 21 C 1.38999 * 120.02565 * 179.97438 * 8 6 5 22 22 C 1.54516 * 110.62655 * 183.01647 * 4 3 2 23 23 C 1.54477 * 104.06287 * 241.29689 * 22 4 3 24 24 O 1.44427 * 104.80348 * 336.02041 * 23 22 4 25 25 C 1.44427 * 105.27391 * 40.51018 * 24 23 22 26 26 H 1.08999 * 109.46879 * 299.99632 * 1 2 3 27 27 H 1.08995 * 109.47230 * 59.99962 * 1 2 3 28 28 H 1.09002 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46888 * 240.00136 * 2 1 3 30 30 H 1.08995 * 109.47400 * 120.00565 * 2 1 3 31 31 H 1.08995 * 109.47020 * 59.99860 * 3 2 1 32 32 H 1.09004 * 109.46932 * 300.00216 * 3 2 1 33 33 H 0.96994 * 119.99552 * 1.90358 * 5 4 3 34 34 H 1.08004 * 119.81444 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.79378 * 180.25666 * 10 9 8 36 36 H 1.07999 * 119.98129 * 179.76851 * 11 10 9 37 37 H 0.97002 * 119.99718 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.20252 * 359.97438 * 21 8 6 39 39 H 1.09007 * 110.50833 * 359.93888 * 22 4 3 40 40 H 1.08995 * 110.51578 * 122.64954 * 22 4 3 41 41 H 1.08998 * 110.37286 * 217.18982 * 23 22 4 42 42 H 1.09005 * 110.46620 * 94.90033 * 23 22 4 43 43 H 1.09001 * 110.36830 * 200.65492 * 25 24 23 44 44 H 1.09001 * 110.36725 * 78.32494 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0825 0.6413 1.1137 6 6 5.4110 0.5423 1.3174 7 8 6.1840 1.1216 0.5797 8 6 5.9283 -0.2660 2.4427 9 6 5.0388 -0.9234 3.2996 10 6 5.5153 -1.6852 4.3513 11 6 6.8700 -1.7970 4.5737 12 6 7.7801 -1.1385 3.7255 13 6 9.1716 -1.2508 3.9515 14 1 9.5418 -1.4727 4.9417 15 6 10.0691 -1.0744 2.8924 16 7 9.6449 -1.1459 1.6569 17 14 11.8727 -0.7368 3.2427 18 1 12.6099 -2.0231 3.3261 19 1 12.4428 0.0906 2.1493 20 1 11.9989 -0.0094 4.5312 21 6 7.2984 -0.3689 2.6530 22 6 4.1145 2.8865 0.0754 23 6 4.9197 3.0534 -1.2322 24 8 5.2812 1.7091 -1.6172 25 6 4.1108 0.9078 -1.3452 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.4656 0.1822 1.7049 34 1 3.9745 -0.8384 3.1369 35 1 4.8206 -2.1922 5.0046 36 1 7.2343 -2.3905 5.3992 37 1 10.2669 -1.0232 0.9227 38 1 7.9887 0.1398 1.9963 39 1 3.2935 3.6027 0.1125 40 1 4.7648 3.0043 0.9421 41 1 5.8140 3.6504 -1.0536 42 1 4.3032 3.5161 -2.0030 43 1 4.3838 -0.1435 -1.2535 44 1 3.3687 1.0407 -2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287741627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:21 Heat of formation + Delta-G solvation = -88.697915 kcal Electronic energy + Delta-G solvation = -25410.581963 eV Core-core repulsion = 21905.353632 eV Total energy + Delta-G solvation = -3505.228331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = -3.21 seconds Orbital eigenvalues (eV) -41.73089 -39.78430 -38.44745 -36.85479 -35.60412 -34.24539 -32.54428 -31.45134 -31.18061 -29.89914 -27.20168 -26.91274 -24.71269 -23.93587 -22.80219 -22.26846 -21.46161 -20.49474 -19.52632 -18.09143 -17.45336 -17.04598 -16.65763 -16.57806 -16.28690 -15.89130 -15.67340 -15.52895 -15.12290 -14.90478 -14.45667 -14.25135 -14.08559 -13.80217 -13.59119 -13.38163 -13.18327 -12.95360 -12.78159 -12.60918 -12.50665 -12.46336 -12.20942 -12.15188 -11.92188 -11.84187 -11.53133 -11.47906 -11.38955 -11.06750 -10.78414 -10.50032 -9.88031 -9.44929 -9.37329 -8.66504 -6.38721 0.43972 1.01363 1.34637 1.45400 1.51185 2.15835 2.20781 2.27859 2.80379 3.10342 3.55443 3.71777 3.73079 3.87413 4.07429 4.15492 4.19436 4.26427 4.38283 4.42773 4.46556 4.59259 4.69201 4.73840 4.80596 4.81593 4.88755 4.91291 4.96240 5.02485 5.08664 5.15468 5.20854 5.31229 5.32043 5.35651 5.50440 5.52821 5.67333 5.87935 5.93724 6.02721 6.05958 6.29601 6.53959 6.76103 6.87923 6.95487 7.48830 8.29835 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.004318 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.491786 B = 6483.546140 C = 7677.751223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.103 4.103 4 C 0.145 3.855 5 N -0.707 5.707 6 C 0.551 3.449 7 O -0.549 6.549 8 C -0.138 4.138 9 C -0.200 4.200 10 C -0.096 4.096 11 C -0.221 4.221 12 C 0.068 3.932 13 C -0.500 4.500 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.825 5.825 17 Si 0.981 3.019 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.254 1.254 21 C -0.131 4.131 22 C -0.151 4.151 23 C 0.051 3.949 24 O -0.390 6.390 25 C 0.041 3.959 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.408 0.592 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 5.332 -3.702 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.140 4.140 4 C 0.058 3.942 5 N -0.362 5.362 6 C 0.340 3.660 7 O -0.427 6.427 8 C -0.141 4.141 9 C -0.219 4.219 10 C -0.114 4.114 11 C -0.240 4.240 12 C 0.066 3.934 13 C -0.530 4.530 14 H 0.101 0.899 15 C -0.185 4.185 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.178 1.178 21 C -0.152 4.152 22 C -0.190 4.190 23 C -0.026 4.026 24 O -0.309 6.309 25 C -0.036 4.036 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.247 0.753 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.039 5.676 -4.571 18.532 hybrid contribution 1.084 -0.264 0.367 1.174 sum -15.955 5.412 -4.204 17.365 Atomic orbital electron populations 1.21726 0.94056 1.02107 1.02530 1.21583 0.97187 0.95942 1.02132 1.21855 0.88389 0.98616 1.05167 1.21892 0.95957 0.90132 0.86171 1.45907 1.05743 1.52430 1.32158 1.18684 0.82939 0.80322 0.84056 1.90797 1.57697 1.46779 1.47445 1.19914 0.94510 1.02178 0.97531 1.20835 0.97951 1.04674 0.98469 1.20912 0.94767 0.98275 0.97429 1.21390 0.93872 1.05063 1.03717 1.17943 0.94261 0.89666 0.91564 1.19860 0.91489 1.45035 0.96567 0.89878 1.26849 1.06290 0.91506 0.93847 1.69901 1.39310 1.35146 1.00699 0.85216 0.75817 0.79522 0.79271 1.18078 1.19838 1.17780 1.21416 0.93455 1.00199 1.00082 1.23259 1.00509 0.96616 0.98566 1.23342 0.99084 0.84806 0.95328 1.89231 1.36300 1.19869 1.85512 1.23870 0.88202 0.95533 0.96043 0.92021 0.91834 0.92614 0.92218 0.92416 0.89384 0.87865 0.75273 0.84833 0.84462 0.87508 0.90441 0.88575 0.86779 0.93342 0.91444 0.89654 0.92015 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.13 -1.94 5.57 30.60 0.17 -1.77 16 3 C -0.10 -1.53 4.13 30.59 0.13 -1.40 16 4 C 0.14 3.63 0.87 4.62 0.00 3.64 16 5 N -0.71 -21.92 4.82 -421.14 -2.03 -23.95 16 6 C 0.55 24.22 6.89 86.80 0.60 24.82 16 7 O -0.55 -28.33 12.30 17.80 0.22 -28.11 16 8 C -0.14 -6.64 5.87 -20.13 -0.12 -6.76 16 9 C -0.20 -7.95 9.55 22.70 0.22 -7.73 16 10 C -0.10 -3.86 10.01 22.17 0.22 -3.64 16 11 C -0.22 -10.54 9.78 22.77 0.22 -10.32 16 12 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 13 C -0.50 -27.96 9.05 23.47 0.21 -27.75 16 14 H 0.08 4.38 7.90 -2.91 -0.02 4.35 16 15 C 0.03 1.61 5.14 85.26 0.44 2.05 16 16 N -0.82 -47.55 10.97 21.83 0.24 -47.31 16 17 Si 0.98 40.79 29.59 68.60 2.03 42.82 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 21 C -0.13 -7.45 8.23 23.01 0.19 -7.26 16 22 C -0.15 -3.96 5.75 31.61 0.18 -3.78 16 23 C 0.05 1.48 7.29 72.48 0.53 2.01 16 24 O -0.39 -14.75 9.68 -127.32 -1.23 -15.98 16 25 C 0.04 1.21 5.48 72.48 0.40 1.60 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.97 7.55 -2.38 -0.02 0.96 16 30 H 0.06 0.94 6.58 -2.39 -0.02 0.93 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.11 8.01 -2.38 -0.02 1.09 16 33 H 0.41 10.45 5.01 -92.71 -0.46 9.98 16 34 H 0.13 4.02 6.38 -2.91 -0.02 4.00 16 35 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.29 15.25 8.30 -92.71 -0.77 14.48 16 38 H 0.10 6.13 5.76 -2.91 -0.02 6.11 16 39 H 0.11 2.00 7.74 -2.38 -0.02 1.98 16 40 H 0.05 1.64 6.91 -2.39 -0.02 1.62 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 44 H 0.09 1.99 7.78 -2.39 -0.02 1.97 16 Total: -1.00 -73.77 348.71 3.75 -70.01 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.54 Total: 36.05 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.98 Total: -33.54 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.79 Total: -71.25 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.01 Total: -44.09 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -73.77 3.75 -70.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287741627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.683 kcal (2) G-P(sol) polarization free energy of solvation -73.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.20 seconds