Wall clock time and date at job start Tue Mar 31 2020 09:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 C 1.52995 * 113.01804 * 311.66130 * 3 2 1 5 5 C 1.53950 * 113.73912 * 83.32821 * 3 2 1 6 6 N 1.47583 * 86.11679 * 90.73708 * 5 3 2 7 7 C 1.34774 * 134.48594 * 204.63816 * 6 5 3 8 8 O 1.21291 * 119.99642 * 179.97438 * 7 6 5 9 9 C 1.50700 * 120.00404 * 359.97438 * 7 6 5 10 10 C 1.50704 * 109.47075 * 179.97438 * 9 7 6 11 11 C 1.38303 * 119.92879 * 269.72934 * 10 9 7 12 12 C 1.38108 * 120.06416 * 179.72520 * 11 10 9 13 13 C 1.38881 * 119.92928 * 0.56807 * 12 11 10 14 14 O 1.35748 * 120.06396 * 179.68150 * 13 12 11 15 15 C 1.34838 * 116.99464 * 174.48792 * 14 13 12 16 16 H 1.07994 * 120.00175 * 5.05801 * 15 14 13 17 17 C 1.38658 * 119.99711 * 185.05860 * 15 14 13 18 18 N 1.31558 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46878 * 59.99950 * 19 17 15 21 21 H 1.48505 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47210 * 300.00046 * 19 17 15 23 23 C 1.38875 * 119.86500 * 359.70555 * 13 12 11 24 24 C 1.38108 * 119.93123 * 359.97438 * 23 13 12 25 25 C 1.47582 * 91.01486 * 24.63719 * 6 5 3 26 26 H 1.08996 * 109.47874 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47522 * 299.99989 * 1 2 3 28 28 H 1.09001 * 109.47001 * 59.99641 * 1 2 3 29 29 H 1.08996 * 109.47024 * 239.99979 * 2 1 3 30 30 H 1.09001 * 109.47001 * 120.00359 * 2 1 3 31 31 H 1.08996 * 109.47245 * 288.33718 * 4 3 2 32 32 H 1.08999 * 109.47154 * 48.33906 * 4 3 2 33 33 H 1.09004 * 109.46673 * 168.33663 * 4 3 2 34 34 H 1.08997 * 113.76389 * 205.03698 * 5 3 2 35 35 H 1.08997 * 113.77115 * 336.43302 * 5 3 2 36 36 H 1.08994 * 109.46874 * 300.00016 * 9 7 6 37 37 H 1.09001 * 109.46719 * 60.00215 * 9 7 6 38 38 H 1.07993 * 119.96923 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.03328 * 180.27241 * 12 11 10 40 40 H 0.97003 * 120.00011 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.04072 * 179.97438 * 23 13 12 42 42 H 1.08001 * 119.96477 * 180.02562 * 24 23 13 43 43 H 1.08996 * 113.76399 * 221.05520 * 25 6 5 44 44 H 1.09004 * 113.86741 * 89.67989 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3569 2.3185 -1.0520 5 6 2.0922 2.0814 1.3997 6 7 3.4741 1.5685 1.4723 7 6 4.3086 1.2419 2.4790 8 8 5.4238 0.8329 2.2337 9 6 3.8561 1.3848 3.9093 10 6 4.9672 0.9564 4.8329 11 6 5.0558 -0.3622 5.2406 12 6 6.0762 -0.7591 6.0824 13 6 7.0071 0.1700 6.5289 14 8 8.0074 -0.2158 7.3615 15 6 8.9413 0.7081 7.6654 16 1 8.8288 1.7243 7.3177 17 6 10.0462 0.3533 8.4243 18 7 10.1830 -0.8846 8.8483 19 14 11.3404 1.6331 8.8447 20 1 10.7136 2.7357 9.6171 21 1 12.4113 1.0049 9.6596 22 1 11.9248 2.1760 7.5923 23 6 6.9120 1.4944 6.1222 24 6 5.8932 1.8837 5.2750 25 6 3.5751 1.5570 0.0000 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7033 2.0311 -2.0447 32 1 0.2769 2.1842 -0.9910 33 1 1.6038 3.3645 -0.8697 34 1 2.0274 3.1694 1.3886 35 1 1.4143 1.6209 2.1184 36 1 3.5998 2.4256 4.1070 37 1 2.9814 0.7567 4.0781 38 1 4.3287 -1.0831 4.8972 39 1 6.1475 -1.7897 6.3970 40 1 10.9562 -1.1328 9.3789 41 1 7.6341 2.2193 6.4680 42 1 5.8190 2.9135 4.9580 43 1 4.0813 0.6779 -0.3987 44 1 3.9461 2.4902 -0.4239 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291152678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:15 Heat of formation + Delta-G solvation = -12.434283 kcal Electronic energy + Delta-G solvation = -23920.596919 eV Core-core repulsion = 20418.675627 eV Total energy + Delta-G solvation = -3501.921292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81035 -39.10054 -38.10535 -36.34135 -33.88555 -32.41507 -31.42327 -30.12050 -30.03381 -27.63892 -26.54669 -25.94100 -24.93019 -23.77025 -21.90795 -20.73936 -19.31657 -18.64186 -17.91776 -16.91281 -16.87078 -16.16313 -15.83977 -15.11105 -14.90956 -14.54858 -14.45396 -14.22110 -13.90397 -13.55982 -13.51319 -13.22459 -12.95154 -12.73935 -12.63415 -12.45650 -12.28875 -12.15389 -11.90869 -11.76501 -11.45932 -11.22253 -11.19717 -11.01173 -10.79074 -10.70893 -10.63459 -10.57705 -10.39030 -9.56416 -9.26960 -8.76758 -8.73703 -8.08450 -7.09881 -6.39110 -3.97650 2.28996 2.31781 2.77366 2.89676 3.16721 3.18889 3.20997 3.86255 4.01916 4.30222 4.38704 4.60197 4.73088 4.88198 4.93566 5.11208 5.14127 5.14646 5.18073 5.21019 5.28171 5.31945 5.34917 5.38288 5.45539 5.49213 5.57466 5.71017 5.71847 5.76412 5.78528 5.84092 5.89678 5.93854 6.05560 6.28068 6.48293 6.76962 6.98164 7.11736 7.30439 7.43613 7.50738 7.68719 7.90703 8.06198 8.35051 9.06506 9.77464 10.79037 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035643 B = 0.002484 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.384970 B =11270.920708 C =11614.918763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.097 4.097 4 C -0.141 4.141 5 C 0.109 3.891 6 N -0.651 5.651 7 C 0.532 3.468 8 O -0.520 6.520 9 C -0.072 4.072 10 C -0.170 4.170 11 C -0.059 4.059 12 C -0.191 4.191 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.232 4.232 24 C -0.057 4.057 25 C 0.112 3.888 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.604 6.742 -17.384 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.137 4.137 3 C -0.098 4.098 4 C -0.198 4.198 5 C -0.015 4.015 6 N -0.389 5.389 7 C 0.322 3.678 8 O -0.394 6.394 9 C -0.112 4.112 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.210 4.210 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.251 4.251 24 C -0.075 4.075 25 C -0.011 4.011 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.591 6.096 -17.051 26.678 hybrid contribution 0.724 0.809 0.168 1.099 sum -18.866 6.905 -16.883 26.242 Atomic orbital electron populations 1.21831 0.95393 1.01792 1.02000 1.21267 0.95955 0.93699 1.02736 1.22465 0.95200 0.96751 0.95373 1.21793 1.01028 0.98864 0.98161 1.23336 0.82939 0.99034 0.96155 1.50068 1.15840 1.66683 1.06354 1.20794 0.83903 0.76708 0.86422 1.90756 1.19505 1.44749 1.84385 1.20333 0.98441 1.02877 0.89549 1.18654 0.99781 0.94527 1.04180 1.20393 0.96800 0.94416 0.96159 1.20151 0.97583 0.98818 1.04476 1.19375 0.89216 0.92220 0.88905 1.83978 1.30898 1.39355 1.53947 1.21280 1.00156 0.91233 1.34061 0.89162 1.25283 0.97483 0.97356 0.96426 1.70034 1.29180 1.16960 1.33739 0.85787 0.79446 0.79381 0.78844 1.19537 1.20298 1.19518 1.21099 1.02162 0.96577 1.05292 1.20503 0.93576 0.97676 0.95736 1.23217 0.94819 1.02128 0.80907 0.92650 0.92585 0.92224 0.91412 0.91392 0.92006 0.91459 0.92202 0.89834 0.90051 0.89258 0.89230 0.87432 0.86527 0.92033 0.85585 0.87896 0.90302 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.31 37.16 0.35 -0.44 16 2 C -0.10 -0.66 5.42 -26.73 -0.15 -0.80 16 3 C -0.10 -0.63 1.06 -153.58 -0.16 -0.79 16 4 C -0.14 -0.64 8.88 37.16 0.33 -0.31 16 5 C 0.11 0.78 7.70 -2.97 -0.02 0.76 16 6 N -0.65 -7.44 3.47 -177.97 -0.62 -8.05 16 7 C 0.53 8.26 8.05 -10.99 -0.09 8.17 16 8 O -0.52 -10.78 16.76 5.55 0.09 -10.69 16 9 C -0.07 -1.00 5.58 -29.03 -0.16 -1.17 16 10 C -0.17 -3.16 4.38 -104.57 -0.46 -3.61 16 11 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16 12 C -0.19 -4.33 9.99 -39.39 -0.39 -4.73 16 13 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 14 O -0.18 -5.31 9.76 0.03 0.00 -5.31 16 15 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 19 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 24 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 25 C 0.11 1.04 7.98 -2.97 -0.02 1.02 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.26 6.35 -51.93 -0.33 -0.07 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.58 7.99 -51.93 -0.41 0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.26 6.01 -51.93 -0.31 -0.06 16 33 H 0.06 0.25 7.94 -51.93 -0.41 -0.16 16 34 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 35 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 42 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 44 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -35.28 365.66 -7.90 -43.18 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.65 Total: 1.52 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.97 Total: -17.03 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.14 Total: -33.34 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.28 -7.90 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291152678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.746 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds