Wall clock time and date at job start Tue Mar 31 2020 09:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 C 1.52995 * 113.01804 * 311.66130 * 3 2 1 5 5 C 1.53950 * 113.73912 * 83.32821 * 3 2 1 6 6 N 1.47583 * 86.11679 * 90.73708 * 5 3 2 7 7 C 1.34774 * 134.48594 * 204.63816 * 6 5 3 8 8 O 1.21291 * 119.99642 * 179.97438 * 7 6 5 9 9 C 1.50700 * 120.00404 * 359.97438 * 7 6 5 10 10 C 1.50704 * 109.47075 * 179.97438 * 9 7 6 11 11 C 1.38303 * 119.92879 * 269.72934 * 10 9 7 12 12 C 1.38108 * 120.06416 * 179.72520 * 11 10 9 13 13 C 1.38881 * 119.92928 * 0.56807 * 12 11 10 14 14 O 1.35748 * 120.06396 * 179.68150 * 13 12 11 15 15 C 1.34838 * 116.99464 * 174.48792 * 14 13 12 16 16 H 1.07994 * 120.00175 * 5.05801 * 15 14 13 17 17 C 1.38658 * 119.99711 * 185.05860 * 15 14 13 18 18 N 1.31558 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99763 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46878 * 59.99950 * 19 17 15 21 21 H 1.48505 * 109.46895 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47210 * 300.00046 * 19 17 15 23 23 C 1.38875 * 119.86500 * 359.70555 * 13 12 11 24 24 C 1.38108 * 119.93123 * 359.97438 * 23 13 12 25 25 C 1.47582 * 91.01486 * 24.63719 * 6 5 3 26 26 H 1.08996 * 109.47874 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47522 * 299.99989 * 1 2 3 28 28 H 1.09001 * 109.47001 * 59.99641 * 1 2 3 29 29 H 1.08996 * 109.47024 * 239.99979 * 2 1 3 30 30 H 1.09001 * 109.47001 * 120.00359 * 2 1 3 31 31 H 1.08996 * 109.47245 * 288.33718 * 4 3 2 32 32 H 1.08999 * 109.47154 * 48.33906 * 4 3 2 33 33 H 1.09004 * 109.46673 * 168.33663 * 4 3 2 34 34 H 1.08997 * 113.76389 * 205.03698 * 5 3 2 35 35 H 1.08997 * 113.77115 * 336.43302 * 5 3 2 36 36 H 1.08994 * 109.46874 * 300.00016 * 9 7 6 37 37 H 1.09001 * 109.46719 * 60.00215 * 9 7 6 38 38 H 1.07993 * 119.96923 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.03328 * 180.27241 * 12 11 10 40 40 H 0.97003 * 120.00011 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.04072 * 179.97438 * 23 13 12 42 42 H 1.08001 * 119.96477 * 180.02562 * 24 23 13 43 43 H 1.08996 * 113.76399 * 221.05520 * 25 6 5 44 44 H 1.09004 * 113.86741 * 89.67989 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3569 2.3185 -1.0520 5 6 2.0922 2.0814 1.3997 6 7 3.4741 1.5685 1.4723 7 6 4.3086 1.2419 2.4790 8 8 5.4238 0.8329 2.2337 9 6 3.8561 1.3848 3.9093 10 6 4.9672 0.9564 4.8329 11 6 5.0558 -0.3622 5.2406 12 6 6.0762 -0.7591 6.0824 13 6 7.0071 0.1700 6.5289 14 8 8.0074 -0.2158 7.3615 15 6 8.9413 0.7081 7.6654 16 1 8.8288 1.7243 7.3177 17 6 10.0462 0.3533 8.4243 18 7 10.1830 -0.8846 8.8483 19 14 11.3404 1.6331 8.8447 20 1 10.7136 2.7357 9.6171 21 1 12.4113 1.0049 9.6596 22 1 11.9248 2.1760 7.5923 23 6 6.9120 1.4944 6.1222 24 6 5.8932 1.8837 5.2750 25 6 3.5751 1.5570 0.0000 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7033 2.0311 -2.0447 32 1 0.2769 2.1842 -0.9910 33 1 1.6038 3.3645 -0.8697 34 1 2.0274 3.1694 1.3886 35 1 1.4143 1.6209 2.1184 36 1 3.5998 2.4256 4.1070 37 1 2.9814 0.7567 4.0781 38 1 4.3287 -1.0831 4.8972 39 1 6.1475 -1.7897 6.3970 40 1 10.9562 -1.1328 9.3789 41 1 7.6341 2.2193 6.4680 42 1 5.8190 2.9135 4.9580 43 1 4.0813 0.6779 -0.3987 44 1 3.9461 2.4902 -0.4239 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291152678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:14 Heat of formation + Delta-G solvation = -34.694080 kcal Electronic energy + Delta-G solvation = -23921.562176 eV Core-core repulsion = 20418.675627 eV Total energy + Delta-G solvation = -3502.886549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64278 -40.78908 -39.42209 -38.06753 -34.58278 -34.40073 -32.91651 -31.81253 -30.75831 -28.73503 -27.51209 -27.19181 -26.42843 -24.40195 -23.66534 -22.35957 -20.33188 -19.85621 -19.23944 -18.85031 -17.87692 -17.05653 -16.92134 -16.39707 -16.31261 -15.87229 -15.60411 -15.52704 -15.39211 -15.02998 -14.84911 -14.42792 -14.21942 -14.08500 -13.62127 -13.52034 -13.23949 -12.98322 -12.89230 -12.78799 -12.65301 -12.47001 -12.40032 -12.33647 -12.24884 -12.15009 -11.73962 -11.53965 -11.20939 -11.20644 -10.84873 -10.66892 -9.79598 -9.65495 -8.92656 -8.48408 -6.16904 0.58290 0.63557 1.32663 1.43978 1.49663 1.67820 1.93144 2.16884 2.80502 3.12463 3.28611 3.49835 3.65698 3.82993 3.88662 4.01549 4.08808 4.16848 4.23544 4.42693 4.49885 4.51794 4.55683 4.61402 4.63850 4.67784 4.73801 4.76704 4.77824 4.93278 5.03056 5.07004 5.09186 5.13084 5.20255 5.27124 5.28195 5.31126 5.43841 5.53696 5.63209 5.68780 5.74740 6.01057 6.19767 6.75759 6.95674 7.23433 7.76431 8.74809 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.035643 B = 0.002484 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.384970 B =11270.920708 C =11614.918763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.137 4.137 5 C 0.108 3.892 6 N -0.651 5.651 7 C 0.527 3.473 8 O -0.589 6.589 9 C -0.069 4.069 10 C -0.147 4.147 11 C -0.058 4.058 12 C -0.205 4.205 13 C 0.113 3.887 14 O -0.232 6.232 15 C -0.416 4.416 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.254 1.254 21 H -0.269 1.269 22 H -0.260 1.260 23 C -0.243 4.243 24 C -0.061 4.061 25 C 0.099 3.901 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.060 0.940 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.938 9.438 -19.371 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.082 4.082 4 C -0.194 4.194 5 C -0.013 4.013 6 N -0.386 5.386 7 C 0.318 3.682 8 O -0.469 6.469 9 C -0.108 4.108 10 C -0.148 4.148 11 C -0.076 4.076 12 C -0.224 4.224 13 C 0.062 3.938 14 O -0.139 6.139 15 C -0.492 4.492 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.262 4.262 24 C -0.079 4.079 25 C -0.024 4.024 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.078 0.922 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.042 8.828 -19.098 31.203 hybrid contribution 1.404 -0.019 0.484 1.485 sum -21.638 8.809 -18.614 29.871 Atomic orbital electron populations 1.21809 0.93832 1.02010 1.02951 1.21266 0.97250 0.93660 1.01613 1.22355 0.92894 0.96993 0.95977 1.21782 1.01544 0.98746 0.97328 1.23708 0.80346 1.00581 0.96638 1.50161 1.16976 1.64928 1.06571 1.20928 0.83356 0.76271 0.87617 1.90743 1.22428 1.48305 1.85447 1.20422 0.97330 1.05625 0.87425 1.19255 0.99655 0.93629 1.02291 1.20850 0.96223 0.95924 0.94610 1.20434 0.98198 0.98552 1.05257 1.19919 0.89580 0.94085 0.90167 1.83940 1.32661 1.40549 1.56735 1.21792 1.00872 0.91837 1.34736 0.88291 1.26635 0.99654 0.99952 0.95895 1.70185 1.30501 1.19586 1.35645 0.84635 0.76023 0.76440 0.79002 1.17844 1.19352 1.18482 1.21226 1.03287 0.95556 1.06139 1.20913 0.92590 0.99821 0.94534 1.23497 0.97184 1.02015 0.79671 0.92923 0.91829 0.91009 0.91813 0.93425 0.91844 0.90105 0.91304 0.87416 0.88299 0.85845 0.85761 0.83773 0.86837 0.91783 0.86307 0.84545 0.92177 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.31 71.98 0.67 -0.36 16 2 C -0.10 -1.09 5.42 30.59 0.17 -0.92 16 3 C -0.08 -0.78 1.06 -51.52 -0.05 -0.83 16 4 C -0.14 -0.67 8.88 71.98 0.64 -0.03 16 5 C 0.11 1.05 7.70 86.48 0.67 1.71 16 6 N -0.65 -12.88 3.47 -835.35 -2.90 -15.78 16 7 C 0.53 15.02 8.05 87.66 0.71 15.72 16 8 O -0.59 -24.12 16.76 -3.06 -0.05 -24.17 16 9 C -0.07 -1.61 5.58 29.10 0.16 -1.45 16 10 C -0.15 -5.10 4.38 -19.83 -0.09 -5.18 16 11 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 12 C -0.21 -9.62 9.99 22.39 0.22 -9.40 16 13 C 0.11 6.09 6.65 22.58 0.15 6.24 16 14 O -0.23 -14.83 9.76 -22.81 -0.22 -15.05 16 15 C -0.42 -25.57 9.49 67.92 0.64 -24.92 16 16 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 17 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 18 N -0.92 -58.63 13.67 21.61 0.30 -58.33 16 19 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 20 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.24 -11.60 9.17 22.39 0.21 -11.39 16 24 C -0.06 -2.33 9.69 22.25 0.22 -2.12 16 25 C 0.10 1.63 7.98 86.48 0.69 2.32 16 26 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.34 6.35 -2.39 -0.02 0.32 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.71 7.99 -2.39 -0.02 0.69 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.23 6.01 -2.39 -0.01 0.22 16 33 H 0.07 0.26 7.94 -2.38 -0.02 0.24 16 34 H 0.11 0.63 7.96 -2.39 -0.02 0.61 16 35 H 0.10 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.12 2.14 8.08 -2.39 -0.02 2.12 16 37 H 0.12 2.13 8.08 -2.39 -0.02 2.11 16 38 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 40 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 41 H 0.12 5.71 5.64 -2.91 -0.02 5.69 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 44 H 0.09 1.33 8.10 -2.38 -0.02 1.31 16 Total: -1.00 -84.86 365.66 5.82 -79.05 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.99 Total: 21.12 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 5.68 Total: -33.54 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -2.60 Total: -74.11 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.27 Total: -39.22 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -84.86 5.82 -79.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291152678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.351 kcal (2) G-P(sol) polarization free energy of solvation -84.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds