Wall clock time and date at job start Tue Mar 31 2020 08:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47034 * 2 1 4 4 C 1.38017 * 119.89139 * 264.97719 * 3 2 1 5 5 C 1.38243 * 119.95646 * 180.02562 * 4 3 2 6 6 C 1.38145 * 119.98565 * 0.08697 * 5 4 3 7 7 C 1.38465 * 120.31585 * 359.97438 * 6 5 4 8 8 C 1.38414 * 119.82849 * 359.87040 * 7 6 5 9 9 O 1.35844 * 121.80088 * 180.50564 * 8 7 6 10 10 C 1.42830 * 117.84290 * 342.67109 * 9 8 7 11 11 C 1.53417 * 108.37290 * 49.24935 * 10 9 8 12 12 C 1.50767 * 118.76753 * 179.81438 * 7 6 5 13 13 H 1.09003 * 109.43760 * 282.29256 * 12 7 6 14 14 N 1.46498 * 109.43728 * 42.16797 * 12 7 6 15 15 C 1.34774 * 120.00153 * 205.22038 * 14 12 7 16 16 O 1.21285 * 120.00027 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99907 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.46974 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.47410 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99562 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00075 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00648 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99850 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46838 * 59.99947 * 23 21 19 25 25 H 1.48494 * 109.47275 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47108 * 300.00191 * 23 21 19 27 27 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47075 * 300.00282 * 1 2 3 29 29 H 1.09003 * 109.46982 * 60.00172 * 1 2 3 30 30 H 1.09001 * 109.47075 * 239.99718 * 2 1 3 31 31 H 1.09003 * 109.46982 * 119.99828 * 2 1 3 32 32 H 1.08009 * 120.01948 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00545 * 180.10568 * 5 4 3 34 34 H 1.07997 * 119.84390 * 180.02562 * 6 5 4 35 35 H 1.09009 * 109.68630 * 289.53679 * 10 9 8 36 36 H 1.08989 * 109.68856 * 168.97069 * 10 9 8 37 37 H 1.08999 * 109.69313 * 54.98501 * 11 10 9 38 38 H 1.08998 * 109.69745 * 175.53399 * 11 10 9 39 39 H 0.97001 * 119.99716 * 25.21543 * 14 12 7 40 40 H 1.08998 * 109.46835 * 299.98931 * 17 15 14 41 41 H 1.09002 * 109.47670 * 59.99773 * 17 15 14 42 42 H 1.09006 * 109.46931 * 299.99410 * 18 17 15 43 43 H 1.09002 * 109.47701 * 59.99610 * 18 17 15 44 44 H 0.96992 * 120.00230 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3604 2.0344 -1.1920 5 6 2.8218 3.3376 -1.1935 6 6 2.9559 4.0239 -0.0021 7 6 2.6296 3.4131 1.1969 8 6 2.1643 2.1095 1.2013 9 8 1.8230 1.4751 2.3530 10 6 2.2971 2.0247 3.5831 11 6 1.9858 3.5269 3.5934 12 6 2.7933 4.1931 2.4767 13 1 3.8469 4.2161 2.7552 14 7 2.3125 5.5626 2.2779 15 6 2.7907 6.5627 3.0444 16 8 3.6188 6.3288 3.8991 17 6 2.2956 7.9713 2.8402 18 6 2.9923 8.9054 3.8317 19 6 2.4968 10.3140 3.6280 20 1 1.7590 10.5222 2.8671 21 6 2.9852 11.3369 4.4129 22 7 3.8831 11.0834 5.3398 23 14 2.3714 13.0830 4.1599 24 1 0.9040 13.1290 4.3828 25 1 3.0475 13.9896 5.1222 26 1 2.6754 13.5185 2.7731 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2574 1.4965 -2.1229 33 1 3.0771 3.8190 -2.1259 34 1 3.3162 5.0420 -0.0060 35 1 3.3736 1.8724 3.6625 36 1 1.7945 1.5399 4.4198 37 1 0.9210 3.6826 3.4199 38 1 2.2673 3.9538 4.5560 39 1 1.6500 5.7495 1.5945 40 1 2.5181 8.2905 1.8220 41 1 1.2186 8.0054 3.0047 42 1 2.7695 8.5860 4.8498 43 1 4.0694 8.8715 3.6677 44 1 4.2263 11.8029 5.8922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291734479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:03 Heat of formation + Delta-G solvation = -95.034733 kcal Electronic energy + Delta-G solvation = -24402.199893 eV Core-core repulsion = 20896.696776 eV Total energy + Delta-G solvation = -3505.503116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05893 -40.53917 -38.62214 -37.01170 -35.56300 -34.63206 -33.32002 -32.37385 -31.51943 -30.01486 -27.99546 -26.12583 -25.02536 -24.60460 -23.47884 -21.78893 -21.31441 -20.97626 -18.92619 -18.76013 -17.74465 -17.63603 -17.03726 -16.83052 -16.46553 -16.32111 -15.83003 -15.25637 -15.16292 -14.88651 -14.69904 -14.57569 -14.27884 -14.17710 -14.05145 -13.55428 -13.52033 -13.25010 -12.84590 -12.78660 -12.67975 -12.51547 -12.34967 -12.17738 -11.92479 -11.83927 -11.68711 -11.65594 -11.48127 -11.33340 -10.79377 -10.57097 -10.26911 -9.63251 -9.09651 -8.18648 -6.32802 0.24666 0.42841 1.41545 1.45932 1.53676 1.65719 2.11722 2.33206 2.43694 2.76981 3.14258 3.39630 3.62495 3.70640 3.85481 3.95437 4.07381 4.13512 4.30651 4.33649 4.40571 4.48719 4.50932 4.52960 4.54627 4.59316 4.64502 4.74456 4.86007 4.94216 5.02293 5.06996 5.12804 5.18439 5.33280 5.43540 5.45951 5.49161 5.54472 5.60529 5.62254 5.84478 5.84987 6.16793 6.41258 6.53547 6.85341 7.27751 7.37524 8.93772 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.002734 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.975456 B =10237.145650 C =10744.535757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.122 4.122 4 C -0.080 4.080 5 C -0.149 4.149 6 C -0.090 4.090 7 C -0.182 4.182 8 C 0.131 3.869 9 O -0.316 6.316 10 C 0.067 3.933 11 C -0.167 4.167 12 C 0.192 3.808 13 H 0.073 0.927 14 N -0.711 5.711 15 C 0.516 3.484 16 O -0.583 6.583 17 C -0.119 4.119 18 C 0.044 3.956 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.288 1.288 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.105 0.895 41 H 0.103 0.897 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -23.823 -14.968 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.167 4.167 6 C -0.108 4.108 7 C -0.183 4.183 8 C 0.085 3.915 9 O -0.230 6.230 10 C -0.008 4.008 11 C -0.205 4.205 12 C 0.087 3.913 13 H 0.091 0.909 14 N -0.363 5.363 15 C 0.305 3.695 16 O -0.462 6.462 17 C -0.159 4.159 18 C 0.006 3.994 19 C -0.582 4.582 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.213 1.213 26 H -0.187 1.187 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.877 -24.079 -14.195 28.785 hybrid contribution 0.116 1.505 0.456 1.577 sum -6.761 -22.575 -13.739 27.278 Atomic orbital electron populations 1.21686 0.94467 1.02172 1.01514 1.20386 0.96370 0.90956 1.03265 1.19734 1.04194 0.97857 0.90497 1.21237 0.96308 0.94734 0.97472 1.21305 1.01810 0.95293 0.98253 1.21048 0.97893 1.00222 0.91637 1.19822 1.08576 0.94449 0.95464 1.18689 0.95994 0.90034 0.86783 1.85980 1.71482 1.52534 1.12988 1.23095 1.00596 0.92145 0.84951 1.22582 1.01478 0.96804 0.99669 1.19497 0.98518 0.80974 0.92271 0.90909 1.46000 1.45240 1.06190 1.38903 1.21344 0.80208 0.88093 0.79891 1.90655 1.34866 1.85131 1.35553 1.21643 1.02328 0.89228 1.02657 1.18675 0.94173 0.93383 0.93171 1.21686 1.24329 0.93321 1.18887 0.90658 1.26130 0.95077 1.04519 0.94680 1.70164 1.30959 1.34234 1.22386 0.85383 0.78792 0.77800 0.78334 1.18711 1.21327 1.18686 0.91277 0.93966 0.92448 0.89391 0.91416 0.82666 0.83522 0.85768 0.91344 0.84630 0.89952 0.90565 0.74896 0.87718 0.87843 0.99881 0.99887 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.07 -1.03 5.74 29.85 0.17 -0.86 16 3 C -0.12 -2.21 5.15 -19.71 -0.10 -2.31 16 4 C -0.08 -1.21 9.67 22.22 0.21 -0.99 16 5 C -0.15 -2.45 10.04 22.25 0.22 -2.23 16 6 C -0.09 -1.87 9.03 22.30 0.20 -1.67 16 7 C -0.18 -4.23 5.47 -19.75 -0.11 -4.34 16 8 C 0.13 2.88 6.46 22.52 0.15 3.02 16 9 O -0.32 -6.75 9.29 -91.80 -0.85 -7.60 16 10 C 0.07 1.29 7.03 72.12 0.51 1.79 16 11 C -0.17 -4.00 5.76 30.76 0.18 -3.82 16 12 C 0.19 5.17 2.59 44.29 0.11 5.28 16 13 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16 14 N -0.71 -20.04 4.42 -445.89 -1.97 -22.01 16 15 C 0.52 19.90 7.79 87.66 0.68 20.59 16 16 O -0.58 -28.26 15.64 -3.05 -0.05 -28.31 16 17 C -0.12 -4.77 5.64 29.85 0.17 -4.60 16 18 C 0.04 2.43 4.26 29.85 0.13 2.56 16 19 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 20 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 21 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 22 N -0.94 -59.67 13.29 21.44 0.28 -59.39 16 23 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.89 8.05 -2.39 -0.02 0.88 16 31 H 0.07 1.06 7.62 -2.39 -0.02 1.04 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.12 2.60 7.69 -2.91 -0.02 2.58 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 9.28 8.29 -92.71 -0.77 8.51 16 40 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 42 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 43 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 44 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.98 363.46 3.59 -72.39 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.22 Total: 18.02 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 3.93 Total: -19.49 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.69 Total: -81.40 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.90 Total: -35.91 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -75.98 3.59 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291734479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.647 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds