Wall clock time and date at job start Tue Mar 31 2020 08:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47027 * 2 1 4 4 C 1.38016 * 119.89550 * 264.99988 * 3 2 1 5 5 C 1.38242 * 119.95851 * 180.02562 * 4 3 2 6 6 C 1.38152 * 119.98854 * 359.93680 * 5 4 3 7 7 C 1.38469 * 120.31136 * 0.02562 * 6 5 4 8 8 C 1.38417 * 119.82916 * 0.12740 * 7 6 5 9 9 O 1.35846 * 121.79714 * 179.53371 * 8 7 6 10 10 C 1.42830 * 117.85634 * 17.25672 * 9 8 7 11 11 C 1.53418 * 108.36263 * 310.77836 * 10 9 8 12 12 C 1.50762 * 118.76817 * 180.14558 * 7 6 5 13 13 H 1.09005 * 109.43608 * 77.76362 * 12 7 6 14 14 N 1.46499 * 109.43900 * 317.84580 * 12 7 6 15 15 C 1.34784 * 119.99971 * 154.99932 * 14 12 7 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 14 12 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47331 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47163 * 59.99899 * 23 21 19 25 25 H 1.48505 * 109.47234 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47290 * 299.99894 * 23 21 19 27 27 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47274 * 299.99731 * 1 2 3 29 29 H 1.09000 * 109.47353 * 59.99849 * 1 2 3 30 30 H 1.08999 * 109.46856 * 240.00125 * 2 1 3 31 31 H 1.09000 * 109.46829 * 120.00102 * 2 1 3 32 32 H 1.07994 * 120.01637 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00664 * 179.97438 * 5 4 3 34 34 H 1.07993 * 119.84356 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.67998 * 70.51202 * 10 9 8 36 36 H 1.08996 * 109.68583 * 191.02857 * 10 9 8 37 37 H 1.09007 * 109.69695 * 305.03422 * 11 10 9 38 38 H 1.08995 * 109.70107 * 184.44233 * 11 10 9 39 39 H 0.96999 * 119.99984 * 334.99779 * 14 12 7 40 40 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 41 41 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 42 42 H 1.08997 * 109.47244 * 300.00535 * 18 17 15 43 43 H 1.09002 * 109.46787 * 59.99910 * 18 17 15 44 44 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0346 -1.1920 5 6 2.8213 3.3377 -1.1934 6 6 2.9529 4.0250 -0.0022 7 6 2.6250 3.4146 1.1967 8 6 2.1658 2.1089 1.2015 9 8 1.8417 1.4684 2.3548 10 6 1.6225 2.2635 3.5209 11 6 2.7974 3.2391 3.6685 12 6 2.7788 4.1980 2.4756 13 1 1.9428 4.8896 2.5800 14 7 4.0339 4.9526 2.4371 15 6 4.1702 6.0720 3.1755 16 8 3.2520 6.4571 3.8679 17 6 5.4614 6.8479 3.1363 18 6 5.3530 8.0653 4.0567 19 6 6.6441 8.8416 4.0171 20 1 7.4605 8.5005 3.3978 21 6 6.7834 9.9867 4.7723 22 7 5.7894 10.4017 5.5268 23 14 8.3834 10.9493 4.7227 24 1 8.6459 11.4020 3.3329 25 1 8.2782 12.1309 5.6161 26 1 9.4981 10.0807 5.1792 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2566 1.4968 -2.1228 33 1 3.0783 3.8186 -2.1257 34 1 3.3140 5.0427 -0.0061 35 1 0.6924 2.8219 3.4150 36 1 1.5664 1.6201 4.3989 37 1 3.7359 2.6848 3.6797 38 1 2.6923 3.8033 4.5951 39 1 4.7669 4.6467 1.8803 40 1 6.2791 6.2099 3.4720 41 1 5.6550 7.1801 2.1164 42 1 4.5355 8.7031 3.7207 43 1 5.1592 7.7335 5.0767 44 1 5.8872 11.2076 6.0579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291734481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:10 Heat of formation + Delta-G solvation = -74.578199 kcal Electronic energy + Delta-G solvation = -24385.140748 eV Core-core repulsion = 20880.524693 eV Total energy + Delta-G solvation = -3504.616054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -41.14947 -39.10515 -37.83042 -35.87492 -33.77554 -33.45778 -31.85421 -30.90934 -30.49702 -29.29444 -26.24572 -24.87336 -24.09760 -23.86735 -21.68257 -20.95359 -20.16925 -19.67469 -17.98062 -17.04311 -16.86940 -16.04887 -15.86893 -15.55080 -15.20878 -14.75282 -14.51695 -14.43743 -14.40836 -13.73053 -13.56166 -13.43779 -13.27273 -12.99995 -12.49064 -12.37334 -12.26203 -12.18051 -11.80007 -11.45657 -11.36810 -11.18045 -11.13600 -10.94321 -10.91022 -10.66879 -10.58078 -9.97030 -9.69150 -9.28769 -9.13151 -8.99588 -8.69494 -8.32913 -8.26920 -5.97002 -4.01542 1.06155 1.22177 3.06363 3.18636 3.33822 3.36330 3.38878 3.41111 3.66102 4.32427 4.46501 4.48976 4.57087 4.71635 4.78317 4.96222 4.98448 5.07731 5.16854 5.21854 5.24469 5.35066 5.37859 5.42925 5.45961 5.59128 5.66870 5.71929 5.83575 5.87289 5.97881 6.03722 6.19298 6.20293 6.22433 6.27695 6.36009 6.59555 6.67060 6.87226 7.24072 7.72748 7.84160 7.84507 8.05785 8.37327 8.72604 9.06722 9.62018 11.13893 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.002706 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.418298 B =10346.001391 C =10944.547789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.116 4.116 4 C -0.084 4.084 5 C -0.151 4.151 6 C -0.077 4.077 7 C -0.169 4.169 8 C 0.146 3.854 9 O -0.313 6.313 10 C 0.065 3.935 11 C -0.171 4.171 12 C 0.192 3.808 13 H 0.098 0.902 14 N -0.735 5.735 15 C 0.512 3.488 16 O -0.533 6.533 17 C -0.130 4.130 18 C 0.038 3.962 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 -21.947 -12.576 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.117 4.117 4 C -0.103 4.103 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.170 4.170 8 C 0.101 3.899 9 O -0.227 6.227 10 C -0.010 4.010 11 C -0.210 4.210 12 C 0.087 3.913 13 H 0.115 0.885 14 N -0.389 5.389 15 C 0.300 3.700 16 O -0.408 6.408 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.233 0.767 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.671 -21.684 -11.874 26.547 hybrid contribution 1.293 0.758 -0.176 1.509 sum -8.378 -20.926 -12.050 25.560 Atomic orbital electron populations 1.21705 0.94919 1.01446 1.02043 1.20339 0.96066 0.92060 1.02671 1.19394 1.04375 0.97508 0.90401 1.20865 0.97783 0.94890 0.96721 1.21020 1.02805 0.95003 0.98068 1.20962 0.97555 0.99877 0.91147 1.19958 1.06604 0.94463 0.96021 1.18463 0.95453 0.90200 0.85831 1.85962 1.84431 1.35948 1.16359 1.22998 0.97750 0.93998 0.86302 1.22666 0.99586 0.98266 1.00495 1.19485 0.89411 0.92097 0.90331 0.88466 1.46315 1.15925 1.27384 1.49265 1.21626 0.91086 0.79347 0.77910 1.90663 1.42085 1.67954 1.40094 1.21877 0.92284 0.99356 1.03449 1.18890 0.97090 0.89859 0.94122 1.21183 0.99609 1.09126 1.26716 0.92662 1.25023 0.96510 0.97465 0.95378 1.69985 1.31231 1.23704 1.27931 0.86648 0.83867 0.79466 0.77916 1.20243 1.21280 1.20245 0.92606 0.92472 0.92881 0.91370 0.90645 0.85576 0.85749 0.85428 0.91513 0.87159 0.90175 0.88858 0.76669 0.90204 0.90188 0.95826 0.95854 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.07 -0.61 5.75 -27.89 -0.16 -0.77 16 3 C -0.12 -1.18 5.15 -104.39 -0.54 -1.71 16 4 C -0.08 -0.77 9.67 -39.66 -0.38 -1.15 16 5 C -0.15 -1.44 10.04 -39.61 -0.40 -1.83 16 6 C -0.08 -0.85 9.03 -39.53 -0.36 -1.21 16 7 C -0.17 -2.01 5.47 -104.44 -0.57 -2.58 16 8 C 0.15 1.69 6.46 -39.19 -0.25 1.43 16 9 O -0.31 -3.49 9.28 -19.26 -0.18 -3.67 16 10 C 0.06 0.63 7.03 37.37 0.26 0.90 16 11 C -0.17 -2.02 5.76 -26.48 -0.15 -2.17 16 12 C 0.19 2.52 2.58 -69.02 -0.18 2.34 16 13 H 0.10 1.46 7.57 -51.93 -0.39 1.07 16 14 N -0.74 -10.36 4.43 -54.87 -0.24 -10.60 16 15 C 0.51 9.60 7.79 -10.98 -0.09 9.52 16 16 O -0.53 -12.18 15.64 5.56 0.09 -12.09 16 17 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 18 C 0.04 1.01 4.26 -27.88 -0.12 0.90 16 19 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 23 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16 31 H 0.07 0.67 7.61 -51.93 -0.39 0.27 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.38 7.69 -52.49 -0.40 0.98 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.40 4.70 8.28 -40.82 -0.34 4.36 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.52 363.43 -9.26 -42.77 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.98 Total: 1.66 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.13 Total: -13.51 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.49 Total: -37.28 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.09 Total: -15.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.52 -9.26 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291734481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.806 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds