Wall clock time and date at job start Tue Mar 31 2020 08:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47027 * 2 1 4 4 C 1.38016 * 119.89550 * 264.99988 * 3 2 1 5 5 C 1.38242 * 119.95851 * 180.02562 * 4 3 2 6 6 C 1.38152 * 119.98854 * 359.93680 * 5 4 3 7 7 C 1.38469 * 120.31136 * 0.02562 * 6 5 4 8 8 C 1.38417 * 119.82916 * 0.12740 * 7 6 5 9 9 O 1.35846 * 121.79714 * 179.53371 * 8 7 6 10 10 C 1.42830 * 117.85634 * 17.25672 * 9 8 7 11 11 C 1.53418 * 108.36263 * 310.77836 * 10 9 8 12 12 C 1.50762 * 118.76817 * 180.14558 * 7 6 5 13 13 H 1.09005 * 109.43608 * 77.76362 * 12 7 6 14 14 N 1.46499 * 109.43900 * 317.84580 * 12 7 6 15 15 C 1.34784 * 119.99971 * 154.99932 * 14 12 7 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 14 12 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 12 18 18 C 1.53002 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47331 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47163 * 59.99899 * 23 21 19 25 25 H 1.48505 * 109.47234 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47290 * 299.99894 * 23 21 19 27 27 H 1.09002 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47274 * 299.99731 * 1 2 3 29 29 H 1.09000 * 109.47353 * 59.99849 * 1 2 3 30 30 H 1.08999 * 109.46856 * 240.00125 * 2 1 3 31 31 H 1.09000 * 109.46829 * 120.00102 * 2 1 3 32 32 H 1.07994 * 120.01637 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00664 * 179.97438 * 5 4 3 34 34 H 1.07993 * 119.84356 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.67998 * 70.51202 * 10 9 8 36 36 H 1.08996 * 109.68583 * 191.02857 * 10 9 8 37 37 H 1.09007 * 109.69695 * 305.03422 * 11 10 9 38 38 H 1.08995 * 109.70107 * 184.44233 * 11 10 9 39 39 H 0.96999 * 119.99984 * 334.99779 * 14 12 7 40 40 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 41 41 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 42 42 H 1.08997 * 109.47244 * 300.00535 * 18 17 15 43 43 H 1.09002 * 109.46787 * 59.99910 * 18 17 15 44 44 H 0.97000 * 120.00297 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0346 -1.1920 5 6 2.8213 3.3377 -1.1934 6 6 2.9529 4.0250 -0.0022 7 6 2.6250 3.4146 1.1967 8 6 2.1658 2.1089 1.2015 9 8 1.8417 1.4684 2.3548 10 6 1.6225 2.2635 3.5209 11 6 2.7974 3.2391 3.6685 12 6 2.7788 4.1980 2.4756 13 1 1.9428 4.8896 2.5800 14 7 4.0339 4.9526 2.4371 15 6 4.1702 6.0720 3.1755 16 8 3.2520 6.4571 3.8679 17 6 5.4614 6.8479 3.1363 18 6 5.3530 8.0653 4.0567 19 6 6.6441 8.8416 4.0171 20 1 7.4605 8.5005 3.3978 21 6 6.7834 9.9867 4.7723 22 7 5.7894 10.4017 5.5268 23 14 8.3834 10.9493 4.7227 24 1 8.6459 11.4020 3.3329 25 1 8.2782 12.1309 5.6161 26 1 9.4981 10.0807 5.1792 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2566 1.4968 -2.1228 33 1 3.0783 3.8186 -2.1257 34 1 3.3140 5.0427 -0.0061 35 1 0.6924 2.8219 3.4150 36 1 1.5664 1.6201 4.3989 37 1 3.7359 2.6848 3.6797 38 1 2.6923 3.8033 4.5951 39 1 4.7669 4.6467 1.8803 40 1 6.2791 6.2099 3.4720 41 1 5.6550 7.1801 2.1164 42 1 4.5355 8.7031 3.7207 43 1 5.1592 7.7335 5.0767 44 1 5.8872 11.2076 6.0579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291734481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:07 Heat of formation + Delta-G solvation = -94.929056 kcal Electronic energy + Delta-G solvation = -24386.023227 eV Core-core repulsion = 20880.524693 eV Total energy + Delta-G solvation = -3505.498534 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05971 -40.54064 -38.62112 -37.01381 -35.56301 -34.63181 -33.32052 -32.37525 -31.51903 -30.02526 -27.99546 -26.12187 -24.99788 -24.64290 -23.47929 -21.74950 -21.32712 -21.00510 -18.93000 -18.76530 -17.74987 -17.63852 -17.04053 -16.74498 -16.46184 -16.28920 -15.96309 -15.25606 -15.20625 -14.85530 -14.77768 -14.41242 -14.23535 -14.17800 -14.09817 -13.72996 -13.28024 -13.23449 -13.08973 -12.79256 -12.57694 -12.50597 -12.34362 -12.15430 -11.93562 -11.92163 -11.65840 -11.64203 -11.48010 -11.33337 -10.79169 -10.57040 -10.26975 -9.63334 -9.09293 -8.18620 -6.32730 0.24767 0.42362 1.41600 1.46002 1.53735 1.65751 2.11349 2.33063 2.43831 2.77175 3.14276 3.39542 3.62663 3.70496 3.85145 3.95065 4.07635 4.13501 4.30434 4.33500 4.40583 4.48341 4.50712 4.52547 4.54209 4.59752 4.64019 4.74099 4.85876 4.94131 5.01823 5.07016 5.12407 5.18086 5.33145 5.43079 5.45273 5.49186 5.54443 5.60476 5.62257 5.84501 5.84887 6.16841 6.41184 6.53631 6.85399 7.27791 7.37533 8.93785 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.002706 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.418298 B =10346.001391 C =10944.547789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.122 4.122 4 C -0.080 4.080 5 C -0.149 4.149 6 C -0.090 4.090 7 C -0.182 4.182 8 C 0.131 3.869 9 O -0.317 6.317 10 C 0.068 3.932 11 C -0.167 4.167 12 C 0.192 3.808 13 H 0.073 0.927 14 N -0.711 5.711 15 C 0.516 3.484 16 O -0.583 6.583 17 C -0.119 4.119 18 C 0.044 3.956 19 C -0.544 4.544 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.937 5.937 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.288 1.288 26 H -0.262 1.262 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.104 0.896 41 H 0.105 0.895 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -23.801 -15.004 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.167 4.167 6 C -0.108 4.108 7 C -0.183 4.183 8 C 0.085 3.915 9 O -0.231 6.231 10 C -0.007 4.007 11 C -0.206 4.206 12 C 0.087 3.913 13 H 0.091 0.909 14 N -0.363 5.363 15 C 0.305 3.695 16 O -0.462 6.462 17 C -0.159 4.159 18 C 0.006 3.994 19 C -0.582 4.582 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.213 1.213 26 H -0.187 1.187 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.201 -23.595 -14.351 28.809 hybrid contribution 0.776 1.271 0.519 1.577 sum -7.425 -22.324 -13.832 27.291 Atomic orbital electron populations 1.21684 0.94508 1.02211 1.01460 1.20382 0.96341 0.90968 1.03297 1.19732 1.03938 0.98396 0.90202 1.21237 0.96283 0.94749 0.97490 1.21307 1.01867 0.95227 0.98255 1.21050 0.98201 0.99967 0.91587 1.19823 1.08299 0.94819 0.95381 1.18690 0.96039 0.90199 0.86543 1.85960 1.84508 1.36089 1.16514 1.23086 0.96652 0.94008 0.86950 1.22588 1.00826 0.98205 0.98945 1.19493 0.87689 0.91875 0.92201 0.90941 1.46003 1.16900 1.25751 1.47692 1.21343 0.90043 0.80222 0.77917 1.90652 1.43472 1.69552 1.42533 1.21644 0.93789 0.97291 1.03133 1.18673 0.95486 0.91948 0.93298 1.21684 1.00386 1.09392 1.26748 0.90654 1.26135 1.00659 0.98866 0.94779 1.70168 1.34061 1.24407 1.29098 0.85379 0.78777 0.77610 0.78510 1.18691 1.21336 1.18706 0.91201 0.94000 0.92501 0.89364 0.91392 0.82665 0.83517 0.85760 0.91405 0.84621 0.89904 0.90566 0.74881 0.87833 0.87713 0.99892 0.99890 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.07 -1.03 5.75 29.85 0.17 -0.86 16 3 C -0.12 -2.21 5.15 -19.71 -0.10 -2.31 16 4 C -0.08 -1.21 9.67 22.22 0.21 -0.99 16 5 C -0.15 -2.45 10.04 22.25 0.22 -2.23 16 6 C -0.09 -1.87 9.03 22.30 0.20 -1.67 16 7 C -0.18 -4.24 5.47 -19.75 -0.11 -4.35 16 8 C 0.13 2.88 6.46 22.52 0.15 3.03 16 9 O -0.32 -6.78 9.28 -91.82 -0.85 -7.63 16 10 C 0.07 1.31 7.03 72.12 0.51 1.81 16 11 C -0.17 -4.01 5.76 30.76 0.18 -3.83 16 12 C 0.19 5.17 2.58 44.29 0.11 5.29 16 13 H 0.07 2.32 7.57 -2.38 -0.02 2.30 16 14 N -0.71 -20.04 4.43 -445.89 -1.97 -22.02 16 15 C 0.52 19.91 7.79 87.65 0.68 20.59 16 16 O -0.58 -28.27 15.64 -3.01 -0.05 -28.32 16 17 C -0.12 -4.76 5.64 29.85 0.17 -4.60 16 18 C 0.04 2.43 4.26 29.85 0.13 2.56 16 19 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 20 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 21 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 22 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 23 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.04 0.67 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 31 H 0.07 1.07 7.61 -2.39 -0.02 1.06 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.12 2.60 7.69 -2.91 -0.02 2.58 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 9.27 8.28 -92.71 -0.77 8.50 16 40 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 41 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 42 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 43 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 44 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -76.01 363.43 3.59 -72.42 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.22 Total: 17.99 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.93 Total: -19.46 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -1.69 Total: -81.39 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.90 Total: -35.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -76.01 3.59 -72.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291734481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.510 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds