Wall clock time and date at job start Tue Mar 31 2020 09:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47343 * 2 1 4 4 C 1.37699 * 119.95546 * 100.25177 * 3 2 1 5 5 C 1.39773 * 119.90859 * 180.25388 * 4 3 2 6 6 C 1.47490 * 120.09723 * 179.72414 * 5 4 3 7 7 O 1.21618 * 120.00141 * 332.77027 * 6 5 4 8 8 N 1.34788 * 120.00039 * 152.77142 * 6 5 4 9 9 C 1.36900 * 119.99740 * 3.13297 * 8 6 5 10 10 H 1.08002 * 120.00202 * 120.00265 * 9 8 6 11 11 C 1.39031 * 119.99871 * 299.99265 * 9 8 6 12 12 N 1.31371 * 119.99800 * 181.95070 * 11 9 8 13 13 Si 1.86795 * 119.99910 * 1.95587 * 11 9 8 14 14 H 1.48499 * 109.47208 * 95.98091 * 13 11 9 15 15 H 1.48501 * 109.47288 * 215.98217 * 13 11 9 16 16 H 1.48508 * 109.47272 * 335.98204 * 13 11 9 17 17 C 1.46501 * 119.99663 * 183.12799 * 8 6 5 18 18 C 1.54263 * 110.03050 * 233.47517 * 17 8 6 19 19 C 1.54970 * 104.15851 * 217.14133 * 18 17 8 20 20 C 1.54883 * 102.77646 * 37.88943 * 19 18 17 21 21 C 1.53874 * 110.02594 * 116.26204 * 17 8 6 22 22 C 1.39823 * 119.80882 * 359.74708 * 5 4 3 23 23 C 1.37657 * 119.90584 * 0.02562 * 22 5 4 24 24 C 1.38995 * 119.94889 * 279.99881 * 3 2 1 25 25 O 1.35709 * 119.90580 * 0.02571 * 24 3 2 26 26 H 1.09006 * 109.46950 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47082 * 299.99818 * 1 2 3 28 28 H 1.08998 * 109.46993 * 60.00746 * 1 2 3 29 29 H 1.09004 * 109.47180 * 239.99874 * 2 1 3 30 30 H 1.09005 * 109.46932 * 120.00123 * 2 1 3 31 31 H 1.08008 * 120.05040 * 0.02562 * 4 3 2 32 32 H 0.97001 * 120.00291 * 180.02562 * 12 11 9 33 33 H 1.08996 * 110.02259 * 354.87253 * 17 8 6 34 34 H 1.09004 * 110.49011 * 335.78822 * 18 17 8 35 35 H 1.09000 * 110.48671 * 98.43498 * 18 17 8 36 36 H 1.08996 * 110.71777 * 279.57476 * 19 18 17 37 37 H 1.09005 * 110.91905 * 156.29478 * 19 18 17 38 38 H 1.09005 * 110.48841 * 203.40032 * 20 19 18 39 39 H 1.09007 * 110.59954 * 80.81756 * 20 19 18 40 40 H 1.09005 * 110.03216 * 238.56270 * 21 17 8 41 41 H 1.08998 * 110.03918 * 359.94739 * 21 17 8 42 42 H 1.08007 * 120.04555 * 180.02562 * 22 5 4 43 43 H 1.08002 * 119.95791 * 179.97438 * 23 22 5 44 44 H 0.96701 * 113.99418 * 269.71370 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4618 1.9982 1.1740 5 6 2.9226 3.3178 1.1738 6 6 3.3778 3.9425 2.4300 7 8 2.9282 3.5644 3.4949 8 7 4.2920 4.9324 2.3978 9 6 4.7504 5.4019 1.1963 10 1 4.6120 6.4404 0.9339 11 6 5.3944 4.5419 0.3139 12 7 5.8682 5.0006 -0.8223 13 14 5.5857 2.7342 0.7438 14 1 4.4893 1.9565 0.1126 15 1 6.8940 2.2419 0.2425 16 1 5.5259 2.5669 2.2182 17 6 4.7950 5.5058 3.6486 18 6 4.6252 7.0390 3.6328 19 6 5.8925 7.5682 4.3507 20 6 6.9977 6.6067 3.8478 21 6 6.3028 5.2309 3.7855 22 6 2.9503 4.0442 -0.0206 23 6 2.5236 3.4578 -1.1906 24 6 2.0666 2.1447 -1.1861 25 8 1.6468 1.5703 -2.3417 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.4392 1.4335 2.0944 32 1 6.3172 4.4006 -1.4382 33 1 4.2592 5.0795 4.4966 34 1 4.5855 7.4080 2.6078 35 1 3.7275 7.3291 4.1786 36 1 5.7811 7.4964 5.4326 37 1 6.1085 8.5943 4.0532 38 1 7.8307 6.5820 4.5505 39 1 7.3437 6.9044 2.8579 40 1 6.4987 4.6719 4.7006 41 1 6.6601 4.6700 2.9219 42 1 3.3060 5.0640 -0.0252 43 1 2.5443 4.0182 -2.1136 44 1 2.3462 1.1172 -2.8323 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291926721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:25 Heat of formation + Delta-G solvation = -59.767625 kcal Electronic energy + Delta-G solvation = -26281.114382 eV Core-core repulsion = 22777.140562 eV Total energy + Delta-G solvation = -3503.973820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 5.43 seconds Orbital eigenvalues (eV) -41.80949 -40.42987 -38.56894 -37.42720 -36.29786 -34.77804 -33.79334 -31.30114 -30.31365 -29.54602 -28.51608 -26.74004 -24.76442 -24.39213 -22.53452 -21.75353 -21.20604 -20.86503 -19.30728 -19.00339 -17.79084 -17.60644 -16.77541 -16.48600 -16.28179 -16.09347 -15.82265 -15.37347 -15.05658 -14.93683 -14.66356 -14.54094 -14.18850 -14.05381 -13.81575 -13.68029 -13.11527 -13.03130 -12.89815 -12.67425 -12.50427 -12.42478 -12.08034 -11.90171 -11.87169 -11.85699 -11.61794 -11.40137 -11.34330 -11.28880 -10.95992 -10.57819 -9.68612 -9.50862 -9.29951 -8.45981 -6.28930 -0.10778 0.44302 1.22317 1.31021 1.38614 1.85696 2.17572 2.56744 2.86135 2.86471 3.27728 3.78111 3.81168 3.85085 3.89793 4.03752 4.14235 4.22376 4.47508 4.51419 4.57145 4.59990 4.63772 4.65761 4.70402 4.72397 4.88013 4.89825 5.00391 5.01352 5.04599 5.13434 5.17864 5.21546 5.35178 5.37949 5.39174 5.47790 5.53852 5.57178 5.59804 5.75143 5.85708 5.99544 6.39557 6.81424 6.97231 7.28860 7.75938 8.58047 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.005621 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.493389 B = 4980.493658 C = 5475.333221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.067 4.067 5 C -0.168 4.168 6 C 0.520 3.480 7 O -0.619 6.619 8 N -0.464 5.464 9 C -0.341 4.341 10 H 0.090 0.910 11 C 0.079 3.921 12 N -0.877 5.877 13 Si 0.882 3.118 14 H -0.225 1.225 15 H -0.303 1.303 16 H -0.292 1.292 17 C 0.121 3.879 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.045 4.045 23 C -0.170 4.170 24 C 0.137 3.863 25 O -0.493 6.493 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.279 0.721 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.165 0.835 43 H 0.139 0.861 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -4.021 -0.301 4.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.134 4.134 4 C -0.086 4.086 5 C -0.170 4.170 6 C 0.312 3.688 7 O -0.507 6.507 8 N -0.184 5.184 9 C -0.469 4.469 10 H 0.107 0.893 11 C -0.129 4.129 12 N -0.512 5.512 13 Si 0.710 3.290 14 H -0.148 1.148 15 H -0.231 1.231 16 H -0.218 1.218 17 C 0.018 3.982 18 C -0.161 4.161 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.063 4.063 23 C -0.188 4.188 24 C 0.092 3.908 25 O -0.306 6.306 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.182 0.818 43 H 0.157 0.843 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.224 -3.982 0.181 5.126 hybrid contribution 0.957 -0.986 -0.065 1.375 sum -2.267 -4.967 0.115 5.461 Atomic orbital electron populations 1.21676 0.93827 1.02498 1.01541 1.20423 0.96982 0.90132 1.03341 1.20223 1.02546 0.98523 0.92156 1.20987 0.96119 0.93496 0.98023 1.19825 1.06543 0.96172 0.94502 1.18894 0.79409 0.82088 0.88431 1.90566 1.60312 1.67108 1.32700 1.43695 1.35225 1.32844 1.06614 1.18482 1.38336 0.97357 0.92681 0.89295 1.25794 0.92407 0.99468 0.95220 1.69652 1.35217 1.36773 1.09556 0.86895 0.78161 0.85230 0.78695 1.14800 1.23115 1.21802 1.21932 0.94330 0.94998 0.86927 1.22603 0.98913 0.93159 1.01416 1.22400 0.93085 0.98986 1.00051 1.22220 0.98022 0.93367 1.01119 1.22387 0.94846 0.99037 1.00338 1.22418 0.90562 1.03117 0.90212 1.21572 1.01799 0.95982 0.99450 1.18487 0.94995 0.91213 0.86129 1.84667 1.39212 1.73525 1.33166 0.90358 0.93890 0.92706 0.89393 0.91003 0.86208 0.91040 0.91262 0.91570 0.91667 0.90111 0.90028 0.89907 0.92657 0.91700 0.94029 0.81831 0.84309 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.89 71.98 0.71 -2.55 16 2 C -0.07 -1.87 5.72 29.85 0.17 -1.70 16 3 C -0.13 -4.60 4.47 -19.81 -0.09 -4.69 16 4 C -0.07 -2.76 7.44 22.51 0.17 -2.59 16 5 C -0.17 -7.69 2.96 -20.08 -0.06 -7.75 16 6 C 0.52 26.32 5.63 86.68 0.49 26.81 16 7 O -0.62 -33.64 16.00 -4.09 -0.07 -33.70 16 8 N -0.46 -22.38 1.90 -612.97 -1.17 -23.54 16 9 C -0.34 -16.82 5.47 84.09 0.46 -16.36 16 10 H 0.09 4.64 6.91 -2.91 -0.02 4.62 16 11 C 0.08 3.92 3.38 84.95 0.29 4.21 16 12 N -0.88 -44.61 13.95 21.68 0.30 -44.31 16 13 Si 0.88 42.08 22.14 68.60 1.52 43.60 16 14 H -0.22 -9.94 4.04 99.48 0.40 -9.54 16 15 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 16 H -0.29 -15.29 6.61 99.48 0.66 -14.63 16 17 C 0.12 5.14 3.29 45.71 0.15 5.29 16 18 C -0.12 -4.36 6.40 31.70 0.20 -4.16 16 19 C -0.11 -3.01 6.91 31.91 0.22 -2.79 16 20 C -0.11 -3.44 6.83 31.67 0.22 -3.22 16 21 C -0.13 -4.97 6.31 31.32 0.20 -4.78 16 22 C -0.05 -1.96 5.91 22.52 0.13 -1.83 16 23 C -0.17 -6.37 9.76 22.32 0.22 -6.15 16 24 C 0.14 4.58 6.42 22.64 0.15 4.73 16 25 O -0.49 -12.89 12.61 -90.30 -1.14 -14.03 16 26 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.36 8.04 -2.39 -0.02 1.34 16 29 H 0.09 1.92 7.85 -2.38 -0.02 1.90 16 30 H 0.07 1.80 7.99 -2.38 -0.02 1.78 16 31 H 0.12 4.93 7.85 -2.91 -0.02 4.91 16 32 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 33 H 0.07 3.08 6.95 -2.39 -0.02 3.07 16 34 H 0.07 2.59 6.22 -2.39 -0.01 2.58 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.04 1.87 6.56 -2.39 -0.02 1.86 16 42 H 0.16 7.79 4.77 -2.91 -0.01 7.77 16 43 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.41 6.86 9.06 -74.06 -0.67 6.19 16 Total: -1.00 -62.30 334.87 3.06 -59.24 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.01 Total: 30.26 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 3.62 Total: -17.52 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -0.86 Total: -67.85 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -1.20 Total: -47.73 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.52 Total: 43.60 kcal Total: -62.30 3.06 -59.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291926721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.525 kcal (2) G-P(sol) polarization free energy of solvation -62.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.43 seconds