Wall clock time and date at job start Tue Mar 31 2020 09:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99835 * 2 1 4 4 N 1.46501 * 109.47348 * 124.99767 * 3 2 1 5 5 C 1.46493 * 120.00144 * 270.00167 * 4 3 2 6 6 C 1.50703 * 109.47267 * 269.99800 * 5 4 3 7 7 H 1.08000 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99658 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99800 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47337 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47112 * 120.00239 * 10 8 6 13 13 H 1.48503 * 109.47056 * 239.99680 * 10 8 6 14 14 C 1.34777 * 119.99817 * 89.99687 * 4 3 2 15 15 O 1.21280 * 120.00079 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00122 * 0.02562 * 14 4 3 17 17 O 1.42897 * 109.47183 * 179.97438 * 16 14 4 18 18 C 1.35900 * 117.00064 * 180.02562 * 17 16 14 19 19 C 1.38729 * 120.05734 * 179.97438 * 18 17 16 20 20 C 1.38139 * 119.94678 * 180.02562 * 19 18 17 21 21 C 1.38269 * 120.05623 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.94522 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47466 * 89.99863 * 22 21 20 24 24 C 1.38258 * 120.10873 * 0.24763 * 21 20 19 25 25 C 1.38151 * 120.05669 * 359.45764 * 24 21 20 26 26 H 1.07992 * 120.00226 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99792 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00073 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47143 * 4.99787 * 3 2 1 30 30 H 1.09005 * 109.47290 * 245.00064 * 3 2 1 31 31 H 1.09005 * 109.47409 * 29.99853 * 5 4 3 32 32 H 1.08996 * 109.47249 * 149.99522 * 5 4 3 33 33 H 0.97007 * 119.99565 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47200 * 59.99757 * 16 14 4 35 35 H 1.09001 * 109.46994 * 300.00038 * 16 14 4 36 36 H 1.08005 * 120.02589 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.97265 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47120 * 329.99616 * 22 21 20 39 39 H 1.08998 * 109.46862 * 210.00418 * 22 21 20 40 40 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 41 41 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 42 42 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.97567 * 179.70366 * 24 21 20 44 44 H 1.08005 * 120.02705 * 180.24783 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3031 3.8372 1.6364 8 6 2.5182 4.0668 3.6082 9 7 1.9588 3.4660 4.6356 10 14 2.8726 5.8996 3.6772 11 1 3.5014 6.3306 2.4029 12 1 1.6023 6.6421 3.8779 13 1 3.7952 6.1832 4.8058 14 6 4.2496 0.8662 0.9824 15 8 5.0199 0.8889 1.9189 16 6 4.6972 0.3183 -0.3482 17 8 6.0575 -0.1091 -0.2541 18 6 6.6189 -0.6320 -1.3758 19 6 7.9362 -1.0665 -1.3558 20 6 8.5048 -1.5972 -2.4975 21 6 7.7622 -1.6950 -3.6597 22 6 8.3851 -2.2738 -4.9039 23 6 8.1557 -3.7862 -4.9329 24 6 6.4509 -1.2575 -3.6839 25 6 5.8758 -0.7316 -2.5431 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.4886 1.6967 2.5459 32 1 3.0988 1.3604 3.2259 33 1 1.7299 3.9747 5.4292 34 1 4.6126 1.0953 -1.1081 35 1 4.0681 -0.5284 -0.6227 36 1 8.5171 -0.9892 -0.4485 37 1 9.5304 -1.9353 -2.4824 38 1 9.4556 -2.0686 -4.9035 39 1 7.9286 -1.8201 -5.7835 40 1 7.0852 -3.9914 -4.9334 41 1 8.6123 -4.2399 -4.0532 42 1 8.6059 -4.2048 -5.8331 43 1 5.8743 -1.3305 -4.5942 44 1 4.8502 -0.3936 -2.5614 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292213043.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:59 Heat of formation + Delta-G solvation = -51.410315 kcal Electronic energy + Delta-G solvation = -23952.813194 eV Core-core repulsion = 20449.201775 eV Total energy + Delta-G solvation = -3503.611420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = -3.14 seconds Orbital eigenvalues (eV) -41.48971 -40.48998 -38.67633 -37.27862 -35.15867 -34.41759 -33.72548 -32.05993 -30.95289 -29.57047 -28.38425 -26.92394 -24.97917 -24.38812 -23.56369 -21.75143 -21.20951 -20.11255 -19.40356 -18.65527 -17.98278 -17.34378 -17.32647 -16.70981 -16.44618 -16.07458 -15.92303 -15.45254 -15.31783 -14.80590 -14.52120 -14.45542 -14.19883 -14.17669 -14.05949 -13.62336 -13.36297 -13.32396 -13.02471 -12.94804 -12.81229 -12.62648 -12.28347 -12.22339 -12.01605 -11.84809 -11.80698 -11.67627 -11.59799 -10.72286 -10.67119 -10.33865 -9.94396 -9.57531 -9.03240 -8.24951 -6.39433 0.40192 0.45470 1.25881 1.35290 1.38128 1.49342 1.61330 1.76858 2.36073 2.72112 2.79787 3.05373 3.46383 3.79774 3.92056 3.94098 3.99828 4.03378 4.09639 4.24046 4.30861 4.39936 4.45042 4.53884 4.61426 4.68857 4.81978 4.84931 4.96379 5.04674 5.05459 5.14989 5.18541 5.20092 5.35706 5.42201 5.46024 5.46196 5.70308 5.72513 5.73258 5.86377 5.92210 6.02303 6.38239 6.60855 6.70159 7.21153 7.35796 8.82872 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.002981 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.284362 B = 9391.481815 C =10261.480793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.591 5.591 5 C 0.264 3.736 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.057 3.943 17 O -0.325 6.325 18 C 0.099 3.901 19 C -0.169 4.169 20 C -0.080 4.080 21 C -0.125 4.125 22 C -0.077 4.077 23 C -0.147 4.147 24 C -0.079 4.079 25 C -0.209 4.209 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.029 0.971 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.151 0.849 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -12.079 -23.538 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.021 4.021 17 O -0.239 6.239 18 C 0.054 3.946 19 C -0.188 4.188 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.204 4.204 24 C -0.096 4.096 25 C -0.228 4.228 26 H 0.119 0.881 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.047 0.953 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.169 0.831 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.584 -11.996 -22.683 26.260 hybrid contribution -0.109 0.994 1.021 1.430 sum 5.475 -11.001 -21.662 24.905 Atomic orbital electron populations 1.24074 0.95497 1.03006 0.97613 1.23314 0.96909 0.98115 1.02494 1.20965 0.92887 0.96843 0.88695 1.48130 1.10882 1.59524 1.13705 1.18759 0.94150 0.92774 0.79961 1.21723 1.40640 0.94268 1.01546 0.92692 1.25864 0.94626 1.03839 0.94831 1.70061 1.42768 1.38090 1.05791 0.85357 0.78254 0.78961 0.78180 1.19058 1.19211 1.20923 1.20759 0.82197 0.78450 0.90115 1.90679 1.54001 1.57638 1.43989 1.22585 0.82423 1.01957 0.95093 1.86137 1.27225 1.76263 1.34228 1.19422 0.93780 0.95553 0.85854 1.20638 0.93056 1.04482 1.00607 1.21074 1.00564 0.97113 0.91012 1.20166 0.94662 1.01279 0.96398 1.20511 1.01027 0.95931 0.93972 1.21759 1.01875 0.94650 1.02102 1.21158 0.94742 0.95829 0.97903 1.21511 1.01607 1.06907 0.92768 0.88123 0.86518 0.86727 0.89741 0.87241 0.95328 0.98645 0.92359 0.86636 0.86276 0.86047 0.83499 0.90336 0.89948 0.92875 0.93203 0.91175 0.83145 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.19 -4.73 9.74 25.64 0.25 -4.48 16 3 C 0.13 3.78 5.65 85.63 0.48 4.26 16 4 N -0.59 -25.14 2.44 -830.50 -2.03 -27.17 16 5 C 0.26 14.41 5.16 85.64 0.44 14.85 16 6 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.43 5.46 84.66 0.46 0.90 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 10 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 14 C 0.50 21.74 7.75 87.66 0.68 22.42 16 15 O -0.58 -32.76 16.08 16.01 0.26 -32.50 16 16 C 0.06 1.74 3.77 71.24 0.27 2.01 16 17 O -0.32 -11.53 9.67 -73.39 -0.71 -12.24 16 18 C 0.10 2.78 6.69 22.50 0.15 2.94 16 19 C -0.17 -4.40 9.99 22.36 0.22 -4.18 16 20 C -0.08 -1.56 9.69 22.25 0.22 -1.35 16 21 C -0.12 -2.11 5.13 -19.85 -0.10 -2.22 16 22 C -0.08 -0.86 6.06 29.85 0.18 -0.68 16 23 C -0.15 -1.52 9.89 71.98 0.71 -0.80 16 24 C -0.08 -1.34 9.69 22.25 0.22 -1.13 16 25 C -0.21 -4.44 9.04 22.37 0.20 -4.24 16 26 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 27 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 28 H 0.11 2.63 7.83 -2.91 -0.02 2.61 16 29 H 0.08 2.63 7.72 -2.39 -0.02 2.61 16 30 H 0.11 2.38 6.44 -2.38 -0.02 2.36 16 31 H 0.03 1.57 8.07 -2.38 -0.02 1.55 16 32 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 33 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 34 H 0.12 2.79 6.92 -2.38 -0.02 2.77 16 35 H 0.12 2.76 7.30 -2.39 -0.02 2.74 16 36 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 39 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.07 0.53 8.14 -2.38 -0.02 0.52 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 Total: -1.00 -79.07 374.55 6.40 -72.68 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.97 Total: 13.80 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.59 Total: -5.65 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.74 Total: -83.40 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.45 Total: -44.74 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.07 6.40 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292213043.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.265 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.14 seconds