Wall clock time and date at job start Tue Mar 31 2020 10:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00122 * 2 1 4 4 C 1.53000 * 109.47566 * 124.99633 * 3 2 1 5 5 C 1.53004 * 109.46900 * 59.99540 * 4 3 2 6 6 C 1.52995 * 109.46888 * 300.00194 * 4 3 2 7 7 C 1.52997 * 109.47229 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47058 * 179.97438 * 7 4 3 9 9 C 1.34776 * 120.00532 * 180.02562 * 8 7 4 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 7 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47413 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47271 * 120.00166 * 22 20 18 25 25 H 1.48507 * 109.46838 * 239.99679 * 22 20 18 26 26 H 1.07997 * 120.00034 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99847 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99557 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47438 * 4.99157 * 3 2 1 30 30 H 1.09003 * 109.46995 * 244.99932 * 3 2 1 31 31 H 1.09004 * 109.46904 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47598 * 300.00338 * 5 4 3 33 33 H 1.09000 * 109.46923 * 60.00755 * 5 4 3 34 34 H 1.09004 * 109.46840 * 299.99518 * 6 4 3 35 35 H 1.09000 * 109.47712 * 59.99595 * 6 4 3 36 36 H 1.09004 * 109.47059 * 179.97438 * 6 4 3 37 37 H 1.08999 * 109.46796 * 60.00185 * 7 4 3 38 38 H 1.08995 * 109.47178 * 299.99712 * 7 4 3 39 39 H 0.97003 * 120.00039 * 0.02562 * 8 7 4 40 40 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 41 41 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 42 42 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 43 43 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 44 44 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0245 0.1729 1.0561 6 6 2.2520 1.1963 2.4889 7 6 3.8005 2.6579 1.1812 8 7 4.7302 2.6850 2.3130 9 6 5.5151 3.7619 2.5149 10 8 5.4510 4.7113 1.7577 11 6 6.4510 3.7895 3.6549 12 6 6.5275 2.7015 4.5274 13 6 7.4043 2.7331 5.5905 14 6 8.2112 3.8402 5.7990 15 6 8.1457 4.9231 4.9458 16 6 7.2688 4.9087 3.8696 17 8 7.2034 5.9707 3.0303 18 6 7.9304 7.0571 3.3601 19 1 8.5921 7.0254 4.2130 20 6 7.8286 8.2154 2.6039 21 7 7.0232 8.2538 1.5649 22 14 8.8365 9.7204 3.0605 23 1 9.6580 9.4206 4.2607 24 1 9.7269 10.0819 1.9284 25 1 7.9254 10.8554 3.3556 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1316 0.0894 30 1 2.6213 1.4025 -0.9314 31 1 4.7163 0.1926 1.8982 32 1 3.4795 -0.7711 1.0561 33 1 4.5823 0.2703 0.1247 34 1 1.5471 2.0229 2.5784 35 1 1.7070 0.2524 2.4890 36 1 2.9442 1.2159 3.3308 37 1 3.0958 3.4846 1.2705 38 1 4.3583 2.7548 0.2499 39 1 4.7810 1.9278 2.9172 40 1 5.9038 1.8346 4.3666 41 1 7.4620 1.8913 6.2645 42 1 8.8949 3.8560 6.6349 43 1 8.7776 5.7823 5.1153 44 1 6.9517 9.0639 1.0364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293858974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:06 Heat of formation + Delta-G solvation = -48.579950 kcal Electronic energy + Delta-G solvation = -24565.509842 eV Core-core repulsion = 21062.021157 eV Total energy + Delta-G solvation = -3503.488686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35052 -40.17519 -38.84451 -38.01007 -35.42457 -34.32624 -33.35167 -31.86418 -30.56679 -28.18129 -28.00255 -27.49633 -26.93815 -24.39170 -23.05020 -21.51494 -21.02767 -19.86046 -19.74933 -19.08683 -17.87993 -17.05263 -16.44202 -16.33674 -16.15615 -15.91467 -15.79447 -15.51112 -15.30811 -15.08107 -14.87145 -14.47225 -14.27714 -14.08767 -13.95625 -13.54847 -13.27524 -13.00358 -12.73455 -12.69215 -12.54078 -12.52869 -12.34946 -12.24223 -12.09671 -11.88960 -11.63789 -11.42562 -11.38714 -10.84577 -10.62165 -10.11637 -10.08306 -9.77006 -9.03279 -8.44636 -6.15619 0.12878 0.72820 1.32011 1.42773 1.46937 1.52021 2.11122 2.15607 2.32077 2.87967 3.22984 3.47082 3.63215 3.81697 3.92266 3.98555 4.08464 4.27277 4.30306 4.36954 4.43037 4.52262 4.59536 4.62760 4.76047 4.85978 4.87033 4.92077 4.98628 5.03289 5.07397 5.07858 5.14043 5.17405 5.21574 5.38950 5.46229 5.48527 5.56886 5.61581 5.69820 5.82270 5.96428 5.97219 6.17330 6.70832 6.94705 7.50147 7.80991 8.76209 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.003525 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.299954 B = 7940.237044 C = 9299.367140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.085 4.085 4 C -0.058 4.058 5 C -0.143 4.143 6 C -0.139 4.139 7 C 0.132 3.868 8 N -0.712 5.712 9 C 0.545 3.455 10 O -0.571 6.571 11 C -0.245 4.245 12 C -0.030 4.030 13 C -0.199 4.199 14 C -0.040 4.040 15 C -0.257 4.257 16 C 0.148 3.852 17 O -0.189 6.189 18 C -0.427 4.427 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.245 1.245 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.409 0.591 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.123 0.877 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -19.607 4.839 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.123 4.123 4 C -0.058 4.058 5 C -0.200 4.200 6 C -0.197 4.197 7 C 0.008 3.992 8 N -0.368 5.368 9 C 0.335 3.665 10 O -0.451 6.451 11 C -0.249 4.249 12 C -0.049 4.049 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.277 4.277 16 C 0.093 3.907 17 O -0.092 6.092 18 C -0.503 4.503 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.541 5.541 22 Si 0.841 3.159 23 H -0.168 1.168 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.374 -18.745 3.895 20.517 hybrid contribution 0.390 1.087 -0.139 1.163 sum -6.985 -17.659 3.756 19.358 Atomic orbital electron populations 1.23986 0.95990 1.02274 1.01257 1.22899 0.95929 0.98005 0.99678 1.20754 0.97573 0.96513 0.97420 1.20661 0.95304 0.92930 0.96946 1.21943 0.98369 0.97620 1.02065 1.21884 0.99801 1.02529 0.95436 1.21354 0.91136 0.98176 0.88529 1.45651 1.40752 1.19084 1.31298 1.18578 0.80712 0.82401 0.84800 1.90928 1.68929 1.36969 1.48243 1.19309 1.05146 0.97771 1.02702 1.21281 0.96669 0.94854 0.92068 1.21179 0.99759 1.00296 1.00539 1.21436 0.96492 0.91287 0.96614 1.21301 1.04545 1.02794 0.99032 1.20097 0.92798 0.88293 0.89500 1.84186 1.61054 1.20704 1.43257 1.22083 1.23082 0.89510 1.15611 0.87569 1.26771 0.98475 1.01901 0.95083 1.70331 1.36941 1.29356 1.17521 0.84495 0.77230 0.75028 0.79129 1.16809 1.19356 1.19414 0.87233 0.89096 0.85896 0.91909 0.90974 0.92222 0.89952 0.92973 0.93489 0.90376 0.92217 0.93944 0.93614 0.75130 0.82456 0.81735 0.82813 0.85943 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.69 14.32 67.78 0.97 -1.72 16 2 C -0.15 -2.10 7.65 25.64 0.20 -1.91 16 3 C -0.08 -1.54 4.73 29.85 0.14 -1.40 16 4 C -0.06 -1.13 0.55 -52.18 -0.03 -1.16 16 5 C -0.14 -2.30 8.04 71.98 0.58 -1.72 16 6 C -0.14 -2.40 8.05 71.98 0.58 -1.82 16 7 C 0.13 3.97 4.56 86.38 0.39 4.36 16 8 N -0.71 -23.03 4.91 -466.29 -2.29 -25.32 16 9 C 0.55 25.31 7.76 86.69 0.67 25.99 16 10 O -0.57 -34.56 15.17 16.88 0.26 -34.30 16 11 C -0.24 -10.77 5.89 -19.99 -0.12 -10.89 16 12 C -0.03 -0.92 9.54 22.52 0.21 -0.70 16 13 C -0.20 -5.31 10.03 22.25 0.22 -5.08 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 15 C -0.26 -11.10 9.16 22.36 0.20 -10.90 16 16 C 0.15 7.75 6.66 22.91 0.15 7.90 16 17 O -0.19 -12.24 7.84 0.74 0.01 -12.23 16 18 C -0.43 -26.15 9.49 67.93 0.64 -25.51 16 19 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 20 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 21 N -0.91 -59.95 13.67 21.62 0.30 -59.66 16 22 Si 1.02 44.76 29.55 68.60 2.03 46.78 16 23 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 27 H 0.09 1.30 7.84 -2.91 -0.02 1.28 16 28 H 0.12 1.42 6.80 -2.91 -0.02 1.40 16 29 H 0.06 1.23 7.79 -2.39 -0.02 1.21 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 0.92 6.86 -2.38 -0.02 0.90 16 32 H 0.08 0.97 6.53 -2.39 -0.02 0.95 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.08 7.22 -2.39 -0.02 1.06 16 36 H 0.06 0.97 6.86 -2.38 -0.02 0.95 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 9.77 4.19 -92.71 -0.39 9.38 16 40 H 0.16 3.22 6.40 -2.91 -0.02 3.20 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 42 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 44 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -87.27 358.94 6.43 -80.84 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.62 Total: 30.41 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.52 Total: -26.52 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.99 Total: -84.98 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: 0.26 Total: -46.53 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -87.27 6.43 -80.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293858974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.262 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds