Wall clock time and date at job start Tue Mar 31 2020 09:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46502 * 109.47334 * 125.53478 * 3 2 1 5 5 C 1.46504 * 119.99811 * 265.12201 * 4 3 2 6 6 C 1.50700 * 109.47325 * 276.75732 * 5 4 3 7 7 H 1.08001 * 119.99726 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99863 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00251 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00341 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47136 * 89.99703 * 10 8 6 12 12 H 1.48506 * 109.47357 * 209.99642 * 10 8 6 13 13 H 1.48499 * 109.47016 * 329.99687 * 10 8 6 14 14 C 1.34770 * 120.00570 * 85.12162 * 4 3 2 15 15 O 1.21288 * 119.99609 * 5.14144 * 14 4 3 16 16 C 1.50697 * 120.00553 * 185.14110 * 14 4 3 17 17 C 1.52996 * 109.46976 * 284.33640 * 16 14 4 18 18 O 1.42907 * 109.46849 * 44.33558 * 16 14 4 19 19 C 1.53004 * 109.47418 * 164.33428 * 16 14 4 20 20 C 1.50698 * 109.47185 * 180.02562 * 19 16 14 21 21 C 1.38239 * 119.99504 * 269.72856 * 20 19 16 22 22 C 1.38243 * 119.99416 * 179.76629 * 21 20 19 23 23 C 1.38233 * 120.00026 * 0.50796 * 22 21 20 24 24 C 1.38237 * 119.99794 * 359.74398 * 23 22 21 25 25 C 1.38228 * 120.00224 * 89.99906 * 20 19 16 26 26 H 1.07995 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99973 * 179.97438 * 1 2 3 28 28 H 1.08011 * 120.00249 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47301 * 5.53322 * 3 2 1 30 30 H 1.09007 * 109.47121 * 245.53262 * 3 2 1 31 31 H 1.09008 * 109.46888 * 36.75587 * 5 4 3 32 32 H 1.09003 * 109.47140 * 156.74904 * 5 4 3 33 33 H 0.96995 * 120.00630 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47331 * 64.83568 * 17 16 14 35 35 H 1.09008 * 109.46949 * 184.82927 * 17 16 14 36 36 H 1.08995 * 109.47519 * 304.83587 * 17 16 14 37 37 H 0.96700 * 113.99866 * 60.00135 * 18 16 14 38 38 H 1.09001 * 109.47302 * 300.00412 * 19 16 14 39 39 H 1.09001 * 109.46854 * 60.00106 * 19 16 14 40 40 H 1.07997 * 120.00138 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99496 * 180.22872 * 22 21 20 42 42 H 1.07997 * 119.99841 * 179.72760 * 23 22 21 43 43 H 1.08001 * 119.99587 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00206 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0029 1.3266 1.1240 5 6 2.6145 1.9503 2.3914 6 6 2.8433 3.4376 2.3103 7 1 3.2382 3.8747 1.4051 8 6 2.5475 4.2405 3.3914 9 7 2.7477 5.5385 3.3209 10 14 1.8639 3.4847 4.9569 11 1 2.9846 3.1111 5.8566 12 1 0.9877 4.4698 5.6406 13 1 1.0758 2.2726 4.6182 14 6 4.2244 0.7727 0.9921 15 8 4.5811 0.3398 -0.0833 16 6 5.1472 0.6912 2.1808 17 6 5.7436 2.0723 2.4590 18 8 4.4127 0.2502 3.3246 19 6 6.2739 -0.3007 1.8847 20 6 7.1963 -0.3827 3.0736 21 6 8.2854 0.4641 3.1630 22 6 9.1288 0.3921 4.2560 23 6 8.8891 -0.5336 5.2542 24 6 7.8030 -1.3838 5.1621 25 6 6.9566 -1.3083 4.0718 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3594 2.1312 0.0991 30 1 2.6138 1.4069 -0.9354 31 1 1.5595 1.7550 2.5842 32 1 3.2147 1.5338 3.2004 33 1 2.5393 6.1034 4.0813 34 1 4.9496 2.7584 2.7538 35 1 6.4755 1.9967 3.2633 36 1 6.2307 2.4460 1.5584 37 1 4.0059 -0.6206 3.2189 38 1 5.8490 -1.2847 1.6864 39 1 6.8341 0.0356 1.0122 40 1 8.4753 1.1840 2.3807 41 1 9.9774 1.0562 4.3277 42 1 9.5505 -0.5927 6.1059 43 1 7.6160 -2.1073 5.9419 44 1 6.1085 -1.9731 3.9996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293925315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:22 Heat of formation + Delta-G solvation = -30.580339 kcal Electronic energy + Delta-G solvation = -25776.624186 eV Core-core repulsion = 22273.916022 eV Total energy + Delta-G solvation = -3502.708164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.25038 -38.93599 -36.66715 -35.67692 -33.39592 -32.92861 -32.13785 -30.85200 -29.99927 -28.11861 -26.53507 -25.98336 -23.03211 -22.40797 -22.10214 -20.77170 -19.77327 -18.81330 -17.25042 -16.95863 -16.43964 -15.98526 -15.33897 -15.08619 -14.98895 -14.85947 -14.56956 -14.16713 -13.82778 -13.33761 -13.07167 -12.86081 -12.70753 -12.56120 -12.42609 -12.12231 -11.73532 -11.68980 -11.58246 -11.41700 -11.22409 -11.05298 -10.93903 -10.84357 -10.81328 -10.62040 -10.21726 -9.97046 -9.48508 -9.26903 -8.84652 -8.76190 -8.60744 -8.42650 -7.76494 -6.16835 -4.15290 1.46425 1.52153 2.45536 3.10495 3.26490 3.32962 3.35886 3.74153 4.00091 4.34072 4.48160 4.82380 4.93926 5.06875 5.14521 5.16548 5.21042 5.26437 5.31642 5.35399 5.46249 5.62021 5.66731 5.89129 5.94659 5.99832 6.09604 6.16540 6.18585 6.29028 6.34425 6.43960 6.56224 6.57434 6.60216 6.76830 6.82078 6.94691 7.00006 7.11633 7.16041 7.40846 7.54708 7.77489 8.11221 8.45245 8.76334 8.88934 9.43273 10.95367 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.005795 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.427301 B = 4830.388050 C = 6151.094587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.139 3.861 4 N -0.571 5.571 5 C 0.173 3.827 6 C -0.535 4.535 7 H 0.076 0.924 8 C 0.077 3.923 9 N -0.893 5.893 10 Si 0.872 3.128 11 H -0.270 1.270 12 H -0.287 1.287 13 H -0.265 1.265 14 C 0.492 3.508 15 O -0.567 6.567 16 C 0.137 3.863 17 C -0.161 4.161 18 O -0.529 6.529 19 C -0.092 4.092 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.122 4.122 25 C -0.105 4.105 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.090 0.910 33 H 0.265 0.735 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.367 0.633 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -13.063 1.231 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C 0.016 3.984 4 N -0.300 5.300 5 C 0.053 3.947 6 C -0.573 4.573 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.698 3.302 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.189 1.189 14 C 0.279 3.721 15 O -0.448 6.448 16 C 0.093 3.907 17 C -0.218 4.218 18 O -0.334 6.334 19 C -0.130 4.130 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.123 4.123 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.215 0.785 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.374 -12.498 1.028 14.067 hybrid contribution -0.704 -0.641 0.672 1.166 sum 5.669 -13.139 1.700 14.411 Atomic orbital electron populations 1.23791 0.95787 1.01631 1.01810 1.23371 0.96065 0.99211 0.98809 1.20476 0.92251 0.94832 0.90832 1.47956 1.12764 1.54215 1.15016 1.20675 0.97162 0.94445 0.82390 1.21339 1.44190 0.89926 1.01849 0.90642 1.24826 0.94812 0.94599 0.98423 1.69898 1.47925 1.03854 1.31419 0.86905 0.79822 0.79376 0.84054 1.19582 1.21336 1.18916 1.21215 0.82750 0.77985 0.90183 1.90613 1.75251 1.50379 1.28543 1.21197 0.89074 0.96733 0.83687 1.22198 1.03611 0.94018 1.01948 1.86674 1.69912 1.38134 1.38711 1.21077 0.95902 0.99836 0.96195 1.19703 0.95169 0.95569 0.95974 1.21102 0.94717 0.98705 0.98506 1.21098 0.99633 0.98748 0.94469 1.21074 0.98137 0.96580 0.98901 1.21072 0.95398 0.99506 0.98012 1.20959 0.98862 0.98625 0.93894 0.88344 0.88874 0.87927 0.89402 0.90208 0.95862 0.89340 0.92482 0.86462 0.91574 0.91802 0.78534 0.90761 0.89164 0.86016 0.86330 0.86574 0.86480 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.43 9.81 -36.03 -0.35 -2.79 16 3 C 0.14 2.54 5.85 -5.19 -0.03 2.51 16 4 N -0.57 -11.46 2.46 -176.42 -0.43 -11.89 16 5 C 0.17 3.83 3.56 -5.19 -0.02 3.81 16 6 C -0.53 -13.93 7.70 -34.44 -0.27 -14.20 16 7 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 8 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 9 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 10 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 C 0.49 9.58 6.58 -10.99 -0.07 9.50 16 15 O -0.57 -11.91 15.63 5.55 0.09 -11.83 16 16 C 0.14 2.33 0.64 -91.77 -0.06 2.27 16 17 C -0.16 -3.02 8.21 37.16 0.31 -2.72 16 18 O -0.53 -8.68 9.06 -35.23 -0.32 -8.99 16 19 C -0.09 -1.34 4.04 -27.88 -0.11 -1.46 16 20 C -0.06 -0.88 4.34 -104.63 -0.45 -1.34 16 21 C -0.11 -1.49 7.79 -39.58 -0.31 -1.80 16 22 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.11 -1.34 9.27 -39.59 -0.37 -1.70 16 26 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 27 H 0.09 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 30 H 0.08 1.49 7.51 -51.93 -0.39 1.10 16 31 H 0.02 0.53 7.18 -51.92 -0.37 0.15 16 32 H 0.09 1.93 3.41 -44.28 -0.15 1.78 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.12 2.64 4.68 -51.93 -0.24 2.40 16 35 H 0.07 1.16 5.86 -51.92 -0.30 0.86 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.37 4.66 9.04 53.75 0.49 5.15 16 38 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 39 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 40 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -30.47 357.08 -7.38 -37.84 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.59 Total: 12.58 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.61 Total: -13.72 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.34 Total: -37.04 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.23 Total: -20.82 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.47 -7.38 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.262 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds