Wall clock time and date at job start Tue Mar 31 2020 09:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46502 * 109.47334 * 125.53478 * 3 2 1 5 5 C 1.46504 * 119.99811 * 265.12201 * 4 3 2 6 6 C 1.50700 * 109.47325 * 276.75732 * 5 4 3 7 7 H 1.08001 * 119.99726 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99863 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00251 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00341 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47136 * 89.99703 * 10 8 6 12 12 H 1.48506 * 109.47357 * 209.99642 * 10 8 6 13 13 H 1.48499 * 109.47016 * 329.99687 * 10 8 6 14 14 C 1.34770 * 120.00570 * 85.12162 * 4 3 2 15 15 O 1.21288 * 119.99609 * 5.14144 * 14 4 3 16 16 C 1.50697 * 120.00553 * 185.14110 * 14 4 3 17 17 C 1.52996 * 109.46976 * 284.33640 * 16 14 4 18 18 O 1.42907 * 109.46849 * 44.33558 * 16 14 4 19 19 C 1.53004 * 109.47418 * 164.33428 * 16 14 4 20 20 C 1.50698 * 109.47185 * 180.02562 * 19 16 14 21 21 C 1.38239 * 119.99504 * 269.72856 * 20 19 16 22 22 C 1.38243 * 119.99416 * 179.76629 * 21 20 19 23 23 C 1.38233 * 120.00026 * 0.50796 * 22 21 20 24 24 C 1.38237 * 119.99794 * 359.74398 * 23 22 21 25 25 C 1.38228 * 120.00224 * 89.99906 * 20 19 16 26 26 H 1.07995 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99973 * 179.97438 * 1 2 3 28 28 H 1.08011 * 120.00249 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47301 * 5.53322 * 3 2 1 30 30 H 1.09007 * 109.47121 * 245.53262 * 3 2 1 31 31 H 1.09008 * 109.46888 * 36.75587 * 5 4 3 32 32 H 1.09003 * 109.47140 * 156.74904 * 5 4 3 33 33 H 0.96995 * 120.00630 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47331 * 64.83568 * 17 16 14 35 35 H 1.09008 * 109.46949 * 184.82927 * 17 16 14 36 36 H 1.08995 * 109.47519 * 304.83587 * 17 16 14 37 37 H 0.96700 * 113.99866 * 60.00135 * 18 16 14 38 38 H 1.09001 * 109.47302 * 300.00412 * 19 16 14 39 39 H 1.09001 * 109.46854 * 60.00106 * 19 16 14 40 40 H 1.07997 * 120.00138 * 359.97438 * 21 20 19 41 41 H 1.07995 * 119.99496 * 180.22872 * 22 21 20 42 42 H 1.07997 * 119.99841 * 179.72760 * 23 22 21 43 43 H 1.08001 * 119.99587 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00206 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0029 1.3266 1.1240 5 6 2.6145 1.9503 2.3914 6 6 2.8433 3.4376 2.3103 7 1 3.2382 3.8747 1.4051 8 6 2.5475 4.2405 3.3914 9 7 2.7477 5.5385 3.3209 10 14 1.8639 3.4847 4.9569 11 1 2.9846 3.1111 5.8566 12 1 0.9877 4.4698 5.6406 13 1 1.0758 2.2726 4.6182 14 6 4.2244 0.7727 0.9921 15 8 4.5811 0.3398 -0.0833 16 6 5.1472 0.6912 2.1808 17 6 5.7436 2.0723 2.4590 18 8 4.4127 0.2502 3.3246 19 6 6.2739 -0.3007 1.8847 20 6 7.1963 -0.3827 3.0736 21 6 8.2854 0.4641 3.1630 22 6 9.1288 0.3921 4.2560 23 6 8.8891 -0.5336 5.2542 24 6 7.8030 -1.3838 5.1621 25 6 6.9566 -1.3083 4.0718 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3594 2.1312 0.0991 30 1 2.6138 1.4069 -0.9354 31 1 1.5595 1.7550 2.5842 32 1 3.2147 1.5338 3.2004 33 1 2.5393 6.1034 4.0813 34 1 4.9496 2.7584 2.7538 35 1 6.4755 1.9967 3.2633 36 1 6.2307 2.4460 1.5584 37 1 4.0059 -0.6206 3.2189 38 1 5.8490 -1.2847 1.6864 39 1 6.8341 0.0356 1.0122 40 1 8.4753 1.1840 2.3807 41 1 9.9774 1.0562 4.3277 42 1 9.5505 -0.5927 6.1059 43 1 7.6160 -2.1073 5.9419 44 1 6.1085 -1.9731 3.9996 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293925315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:21 Heat of formation + Delta-G solvation = -48.894906 kcal Electronic energy + Delta-G solvation = -25777.418365 eV Core-core repulsion = 22273.916022 eV Total energy + Delta-G solvation = -3503.502343 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66755 -40.02196 -37.99930 -37.25558 -35.04038 -34.13185 -33.85608 -31.79600 -31.20577 -29.96708 -27.76191 -27.44747 -24.69423 -23.65498 -23.29638 -21.89087 -21.02792 -20.25070 -18.99931 -18.67384 -17.57228 -17.38703 -16.64712 -16.59075 -16.19216 -16.00838 -15.90107 -15.72396 -15.24378 -14.66668 -14.34292 -14.21084 -14.04856 -13.89677 -13.81828 -13.56290 -13.20629 -13.08732 -12.97864 -12.90832 -12.69898 -12.63963 -12.36225 -12.28384 -11.92545 -11.86032 -11.76920 -11.75142 -11.26202 -10.74909 -10.54238 -10.12860 -9.70345 -9.48530 -9.43806 -8.26577 -6.28546 0.51287 0.60023 1.26019 1.41355 1.43716 1.51462 1.54470 2.34422 2.37546 2.96730 3.06460 3.21656 3.45645 3.88570 3.92642 4.04268 4.07890 4.16450 4.19991 4.24711 4.36993 4.49979 4.57980 4.71558 4.78321 4.79821 4.84219 4.89225 4.90168 4.94319 5.00223 5.19379 5.22649 5.26020 5.47566 5.57766 5.62801 5.65287 5.65507 5.70131 5.80222 5.89034 6.19402 6.21196 6.54486 6.66876 6.77750 7.18981 7.34968 8.89414 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.005795 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.427301 B = 4830.388050 C = 6151.094587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.577 5.577 5 C 0.187 3.813 6 C -0.525 4.525 7 H 0.028 0.972 8 C 0.022 3.978 9 N -0.943 5.943 10 Si 0.935 3.065 11 H -0.266 1.266 12 H -0.289 1.289 13 H -0.241 1.241 14 C 0.488 3.512 15 O -0.584 6.584 16 C 0.147 3.853 17 C -0.154 4.154 18 O -0.535 6.535 19 C -0.080 4.080 20 C -0.081 4.081 21 C -0.131 4.131 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.102 0.898 33 H 0.266 0.734 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.387 0.613 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -15.864 3.078 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.014 3.986 4 N -0.305 5.305 5 C 0.066 3.934 6 C -0.564 4.564 7 H 0.047 0.953 8 C -0.177 4.177 9 N -0.583 5.583 10 Si 0.759 3.241 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.164 1.164 14 C 0.276 3.724 15 O -0.466 6.466 16 C 0.104 3.896 17 C -0.211 4.211 18 O -0.343 6.343 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.131 4.131 26 H 0.118 0.882 27 H 0.141 0.859 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.916 -15.335 2.853 16.682 hybrid contribution -0.536 0.262 0.010 0.597 sum 5.380 -15.072 2.863 16.258 Atomic orbital electron populations 1.24045 0.95009 1.03092 0.98214 1.23122 0.96621 0.97611 1.02053 1.20521 0.91944 0.96423 0.89762 1.48000 1.13541 1.54133 1.14845 1.20457 0.97448 0.91733 0.83780 1.21450 1.42858 0.92185 0.99903 0.95341 1.25642 0.95304 0.94801 1.01925 1.70047 1.50037 1.05606 1.32629 0.85888 0.79373 0.79218 0.79641 1.19051 1.21457 1.16441 1.21707 0.82622 0.77332 0.90758 1.90597 1.75408 1.51126 1.29463 1.21015 0.89261 0.96521 0.82819 1.22052 1.02591 0.94399 1.02104 1.86579 1.69981 1.39732 1.37995 1.20926 0.95007 0.99430 0.96428 1.19681 0.95454 0.96757 0.96177 1.21250 0.95350 0.99057 0.99221 1.21377 0.99958 0.99297 0.94215 1.21448 0.98359 0.95857 0.99295 1.21425 0.95011 0.99812 0.98225 1.21209 0.99626 0.98484 0.93775 0.88199 0.85949 0.87561 0.90469 0.91525 0.95453 0.88146 0.92497 0.90173 0.90369 0.92252 0.76317 0.89502 0.90251 0.86289 0.84656 0.84148 0.84065 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 14.32 67.78 0.97 -3.13 16 2 C -0.18 -5.23 9.81 25.65 0.25 -4.98 16 3 C 0.14 5.04 5.85 85.63 0.50 5.54 16 4 N -0.58 -23.27 2.46 -830.47 -2.04 -25.31 16 5 C 0.19 8.17 3.56 85.63 0.30 8.48 16 6 C -0.53 -28.18 7.70 25.60 0.20 -27.98 16 7 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 8 C 0.02 1.20 5.47 84.65 0.46 1.66 16 9 N -0.94 -56.55 13.96 21.44 0.30 -56.25 16 10 Si 0.94 41.67 27.47 68.60 1.88 43.55 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 14 C 0.49 19.04 6.58 87.66 0.58 19.62 16 15 O -0.58 -24.71 15.63 -3.06 -0.05 -24.76 16 16 C 0.15 4.96 0.64 -11.54 -0.01 4.95 16 17 C -0.15 -5.91 8.21 71.98 0.59 -5.31 16 18 O -0.54 -16.48 9.06 -148.98 -1.35 -17.83 16 19 C -0.08 -2.26 4.04 29.85 0.12 -2.14 16 20 C -0.08 -2.11 4.34 -19.87 -0.09 -2.19 16 21 C -0.13 -3.37 7.79 22.27 0.17 -3.20 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 24 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 25 C -0.11 -2.58 9.27 22.27 0.21 -2.37 16 26 H 0.10 2.45 7.84 -2.91 -0.02 2.43 16 27 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 29 H 0.08 2.95 7.69 -2.39 -0.02 2.93 16 30 H 0.07 2.59 7.51 -2.38 -0.02 2.57 16 31 H 0.03 1.19 7.18 -2.38 -0.02 1.17 16 32 H 0.10 4.24 3.41 2.45 0.01 4.25 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.08 3.71 4.68 -2.39 -0.01 3.70 16 35 H 0.08 2.76 5.86 -2.38 -0.01 2.74 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.39 8.69 9.04 -60.60 -0.55 8.14 16 38 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.08 2.40 7.88 -2.39 -0.02 2.38 16 40 H 0.12 3.00 8.04 -2.91 -0.02 2.98 16 41 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.22 357.08 4.09 -63.13 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.41 Total: 36.06 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 4.93 Total: -18.59 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -1.74 Total: -81.56 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.40 Total: -42.58 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Total: -67.22 4.09 -63.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.232 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds