Wall clock time and date at job start Tue Mar 31 2020 09:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50697 * 120.00321 * 2 1 4 4 N 1.46507 * 109.47182 * 125.64907 * 3 2 1 5 5 C 1.46494 * 119.99863 * 265.14633 * 4 3 2 6 6 C 1.50697 * 109.47349 * 269.99657 * 5 4 3 7 7 H 1.08001 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00079 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47002 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46852 * 119.99961 * 10 8 6 13 13 H 1.48493 * 109.47271 * 240.00197 * 10 8 6 14 14 C 1.34775 * 119.99586 * 85.14695 * 4 3 2 15 15 O 1.21275 * 120.00335 * 5.06062 * 14 4 3 16 16 C 1.50703 * 119.99761 * 185.06106 * 14 4 3 17 17 C 1.53001 * 109.47326 * 78.53365 * 16 14 4 18 18 O 1.42907 * 109.46925 * 318.53585 * 16 14 4 19 19 C 1.53001 * 109.47328 * 198.53435 * 16 14 4 20 20 C 1.50698 * 109.47303 * 184.99650 * 19 16 14 21 21 C 1.38235 * 119.99845 * 90.00018 * 20 19 16 22 22 C 1.38230 * 120.00189 * 179.97438 * 21 20 19 23 23 C 1.38240 * 119.99805 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00104 * 0.27509 * 23 22 21 25 25 C 1.38235 * 120.00038 * 359.53281 * 24 23 22 26 26 H 1.07997 * 120.00391 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00145 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00145 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47370 * 5.65177 * 3 2 1 30 30 H 1.08999 * 109.47722 * 245.64783 * 3 2 1 31 31 H 1.09001 * 109.47534 * 30.00627 * 5 4 3 32 32 H 1.09005 * 109.46696 * 150.00073 * 5 4 3 33 33 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47090 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46794 * 300.00496 * 17 16 14 36 36 H 1.08998 * 109.46731 * 59.99796 * 17 16 14 37 37 H 0.96703 * 113.99467 * 294.17589 * 18 16 14 38 38 H 1.08998 * 109.46900 * 64.99978 * 19 16 14 39 39 H 1.08997 * 109.46756 * 305.00176 * 19 16 14 40 40 H 1.07996 * 120.00018 * 0.02562 * 21 20 19 41 41 H 1.08000 * 120.00149 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.99740 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00146 * 179.72360 * 24 23 22 44 44 H 1.08004 * 120.00496 * 180.23177 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0048 1.3254 1.1224 5 6 2.6184 1.9473 2.3913 6 6 2.9998 3.4051 2.3729 7 1 3.4815 3.8264 1.5029 8 6 2.7338 4.2012 3.4668 9 7 2.1477 3.6881 4.5264 10 14 3.2060 6.0084 3.4437 11 1 3.8467 6.3360 2.1447 12 1 1.9882 6.8403 3.6183 13 1 4.1576 6.2855 4.5494 14 6 4.2263 0.7720 0.9875 15 8 4.5805 0.3393 -0.0886 16 6 5.1519 0.6907 2.1740 17 6 4.7302 -0.4748 3.0711 18 8 5.0845 1.9108 2.9151 19 6 6.5855 0.4676 1.6883 20 6 7.4920 0.2640 2.8747 21 6 7.7075 -1.0086 3.3695 22 6 8.5394 -1.1955 4.4575 23 6 9.1563 -0.1097 5.0505 24 6 8.9368 1.1635 4.5589 25 6 8.1080 1.3499 3.4684 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3596 2.1311 0.1012 30 1 2.6122 1.4079 -0.9362 31 1 1.5409 1.8553 2.5278 32 1 3.1326 1.4476 3.2122 33 1 1.9603 4.2483 5.2959 34 1 5.3994 -0.5332 3.9294 35 1 3.7089 -0.3158 3.4171 36 1 4.7816 -1.4053 2.5058 37 1 5.4226 2.6804 2.4372 38 1 6.9171 1.3385 1.1229 39 1 6.6193 -0.4148 1.0494 40 1 7.2266 -1.8570 2.9056 41 1 8.7075 -2.1897 4.8444 42 1 9.8067 -0.2558 5.9003 43 1 9.4152 2.0122 5.0249 44 1 7.9393 2.3443 3.0820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293925316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:25 Heat of formation + Delta-G solvation = -35.155376 kcal Electronic energy + Delta-G solvation = -25791.142553 eV Core-core repulsion = 22288.236000 eV Total energy + Delta-G solvation = -3502.906553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05974 -38.83776 -36.33599 -35.52244 -33.33047 -32.55592 -32.04212 -30.78652 -29.91738 -27.42639 -26.62098 -25.79972 -23.22814 -22.41093 -22.15190 -20.68185 -19.65512 -18.50744 -17.05563 -16.54524 -16.32994 -15.79372 -15.19341 -14.90164 -14.83536 -14.64071 -14.57894 -14.32781 -13.60108 -13.25073 -12.91601 -12.75719 -12.57324 -12.42232 -12.21088 -12.03212 -11.71698 -11.48269 -11.42613 -11.36656 -11.17900 -10.91414 -10.84243 -10.76793 -10.74167 -10.71672 -10.16270 -9.73920 -9.61661 -9.14333 -8.72188 -8.66653 -8.44210 -8.23836 -7.70327 -6.04764 -4.07617 1.53044 1.58947 2.55004 3.25984 3.27347 3.35633 3.37869 3.86400 4.09856 4.41295 4.80487 4.96091 5.01853 5.13891 5.22759 5.27452 5.30808 5.36580 5.40835 5.47129 5.55089 5.67718 5.72591 5.92895 5.96016 6.08224 6.15613 6.16375 6.20698 6.31067 6.31720 6.34461 6.55813 6.62497 6.67386 6.81763 6.86286 6.90778 7.07244 7.18468 7.44888 7.66458 7.85896 8.22348 8.28903 8.42740 8.87846 9.00870 9.55200 11.03412 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.006057 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.963106 B = 4621.630035 C = 6448.806678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.140 3.860 4 N -0.579 5.579 5 C 0.236 3.764 6 C -0.516 4.516 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.490 3.510 15 O -0.576 6.576 16 C 0.129 3.871 17 C -0.137 4.137 18 O -0.503 6.503 19 C -0.096 4.096 20 C -0.063 4.063 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.102 4.102 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.068 0.932 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.373 0.627 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -7.613 -1.705 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C 0.017 3.983 4 N -0.308 5.308 5 C 0.117 3.883 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.526 5.526 10 Si 0.717 3.283 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.210 1.210 14 C 0.277 3.723 15 O -0.458 6.458 16 C 0.085 3.915 17 C -0.194 4.194 18 O -0.309 6.309 19 C -0.134 4.134 20 C -0.063 4.063 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.120 4.120 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.222 0.778 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.647 -8.142 -1.597 11.283 hybrid contribution 0.286 1.478 -0.229 1.523 sum 7.932 -6.663 -1.825 10.519 Atomic orbital electron populations 1.23758 0.95768 1.01540 1.02047 1.23372 0.96062 0.99295 0.98594 1.20443 0.92160 0.94729 0.91000 1.48322 1.12521 1.54443 1.15547 1.19737 0.95905 0.93200 0.79459 1.21296 1.39538 0.93882 1.00801 0.92745 1.24807 0.95147 0.98037 0.95297 1.69923 1.41947 1.35743 1.05025 0.86609 0.78218 0.85598 0.77901 1.19960 1.21234 1.21004 1.21368 0.83139 0.77876 0.89915 1.90585 1.76093 1.50593 1.28492 1.21029 0.91313 0.89132 0.90067 1.21839 1.03340 0.94820 0.99436 1.86952 1.86000 1.15231 1.42696 1.21137 0.93146 1.04075 0.95007 1.19732 0.96482 0.93244 0.96828 1.21041 0.98685 0.96681 0.97036 1.21054 0.97888 0.98606 0.96661 1.21061 1.00636 0.92990 1.00124 1.21102 0.98911 0.96997 0.96754 1.21050 0.96375 0.98541 0.96013 0.88919 0.88450 0.87927 0.89803 0.90502 0.96003 0.91457 0.92946 0.90764 0.90946 0.91950 0.77785 0.90669 0.89477 0.86309 0.86519 0.86652 0.86424 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 29.02 0.42 -2.39 16 2 C -0.15 -2.56 9.81 -36.03 -0.35 -2.91 16 3 C 0.14 2.61 5.84 -5.19 -0.03 2.58 16 4 N -0.58 -11.98 2.45 -176.44 -0.43 -12.41 16 5 C 0.24 5.53 4.61 -5.20 -0.02 5.51 16 6 C -0.52 -12.91 7.07 -34.44 -0.24 -13.15 16 7 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -24.53 13.29 55.43 0.74 -23.80 16 10 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.49 9.83 6.62 -10.98 -0.07 9.76 16 15 O -0.58 -12.40 15.54 5.56 0.09 -12.32 16 16 C 0.13 2.29 0.65 -91.77 -0.06 2.23 16 17 C -0.14 -2.28 7.83 37.16 0.29 -1.99 16 18 O -0.50 -9.89 8.31 -35.23 -0.29 -10.18 16 19 C -0.10 -1.48 4.15 -27.88 -0.12 -1.59 16 20 C -0.06 -0.90 4.25 -104.62 -0.44 -1.35 16 21 C -0.12 -1.53 7.85 -39.59 -0.31 -1.84 16 22 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.10 -1.43 9.40 -39.58 -0.37 -1.81 16 26 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.10 1.37 7.84 -52.48 -0.41 0.95 16 28 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 30 H 0.08 1.44 7.51 -51.93 -0.39 1.05 16 31 H 0.02 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.07 1.66 4.20 -51.93 -0.22 1.44 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.07 1.20 6.14 -51.93 -0.32 0.88 16 35 H 0.07 1.33 6.58 -51.93 -0.34 0.98 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.37 6.96 8.29 45.56 0.38 7.34 16 38 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.09 1.35 7.67 -51.93 -0.40 0.95 16 40 H 0.12 1.40 8.03 -52.49 -0.42 0.98 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -29.02 361.16 -7.96 -36.97 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.87 Total: 12.00 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -2.61 Total: -11.01 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.30 Total: -36.21 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.21 Total: -22.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.02 -7.96 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.818 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds