Wall clock time and date at job start Tue Mar 31 2020 09:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50697 * 120.00321 * 2 1 4 4 N 1.46507 * 109.47182 * 125.64907 * 3 2 1 5 5 C 1.46494 * 119.99863 * 265.14633 * 4 3 2 6 6 C 1.50697 * 109.47349 * 269.99657 * 5 4 3 7 7 H 1.08001 * 120.00026 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00079 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47002 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46852 * 119.99961 * 10 8 6 13 13 H 1.48493 * 109.47271 * 240.00197 * 10 8 6 14 14 C 1.34775 * 119.99586 * 85.14695 * 4 3 2 15 15 O 1.21275 * 120.00335 * 5.06062 * 14 4 3 16 16 C 1.50703 * 119.99761 * 185.06106 * 14 4 3 17 17 C 1.53001 * 109.47326 * 78.53365 * 16 14 4 18 18 O 1.42907 * 109.46925 * 318.53585 * 16 14 4 19 19 C 1.53001 * 109.47328 * 198.53435 * 16 14 4 20 20 C 1.50698 * 109.47303 * 184.99650 * 19 16 14 21 21 C 1.38235 * 119.99845 * 90.00018 * 20 19 16 22 22 C 1.38230 * 120.00189 * 179.97438 * 21 20 19 23 23 C 1.38240 * 119.99805 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00104 * 0.27509 * 23 22 21 25 25 C 1.38235 * 120.00038 * 359.53281 * 24 23 22 26 26 H 1.07997 * 120.00391 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00145 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00145 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47370 * 5.65177 * 3 2 1 30 30 H 1.08999 * 109.47722 * 245.64783 * 3 2 1 31 31 H 1.09001 * 109.47534 * 30.00627 * 5 4 3 32 32 H 1.09005 * 109.46696 * 150.00073 * 5 4 3 33 33 H 0.97001 * 119.99961 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47090 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.46794 * 300.00496 * 17 16 14 36 36 H 1.08998 * 109.46731 * 59.99796 * 17 16 14 37 37 H 0.96703 * 113.99467 * 294.17589 * 18 16 14 38 38 H 1.08998 * 109.46900 * 64.99978 * 19 16 14 39 39 H 1.08997 * 109.46756 * 305.00176 * 19 16 14 40 40 H 1.07996 * 120.00018 * 0.02562 * 21 20 19 41 41 H 1.08000 * 120.00149 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.99740 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00146 * 179.72360 * 24 23 22 44 44 H 1.08004 * 120.00496 * 180.23177 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0048 1.3254 1.1224 5 6 2.6184 1.9473 2.3913 6 6 2.9998 3.4051 2.3729 7 1 3.4815 3.8264 1.5029 8 6 2.7338 4.2012 3.4668 9 7 2.1477 3.6881 4.5264 10 14 3.2060 6.0084 3.4437 11 1 3.8467 6.3360 2.1447 12 1 1.9882 6.8403 3.6183 13 1 4.1576 6.2855 4.5494 14 6 4.2263 0.7720 0.9875 15 8 4.5805 0.3393 -0.0886 16 6 5.1519 0.6907 2.1740 17 6 4.7302 -0.4748 3.0711 18 8 5.0845 1.9108 2.9151 19 6 6.5855 0.4676 1.6883 20 6 7.4920 0.2640 2.8747 21 6 7.7075 -1.0086 3.3695 22 6 8.5394 -1.1955 4.4575 23 6 9.1563 -0.1097 5.0505 24 6 8.9368 1.1635 4.5589 25 6 8.1080 1.3499 3.4684 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3596 2.1311 0.1012 30 1 2.6122 1.4079 -0.9362 31 1 1.5409 1.8553 2.5278 32 1 3.1326 1.4476 3.2122 33 1 1.9603 4.2483 5.2959 34 1 5.3994 -0.5332 3.9294 35 1 3.7089 -0.3158 3.4171 36 1 4.7816 -1.4053 2.5058 37 1 5.4226 2.6804 2.4372 38 1 6.9171 1.3385 1.1229 39 1 6.6193 -0.4148 1.0494 40 1 7.2266 -1.8570 2.9056 41 1 8.7075 -2.1897 4.8444 42 1 9.8067 -0.2558 5.9003 43 1 9.4152 2.0122 5.0249 44 1 7.9393 2.3443 3.0820 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293925316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:24 Heat of formation + Delta-G solvation = -50.680002 kcal Electronic energy + Delta-G solvation = -25791.815751 eV Core-core repulsion = 22288.236000 eV Total energy + Delta-G solvation = -3503.579751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52446 -39.99800 -37.77241 -37.15887 -34.97165 -33.92318 -33.71177 -31.78439 -31.15343 -29.27397 -27.84054 -27.31887 -25.02542 -23.67756 -23.28677 -21.86605 -20.97652 -20.06344 -18.58853 -18.42322 -17.46263 -17.35126 -16.52896 -16.46306 -16.18363 -16.04568 -15.87741 -15.76801 -14.99329 -14.49917 -14.24172 -14.08658 -14.01510 -13.74310 -13.67943 -13.48533 -13.14969 -13.02951 -12.93014 -12.84701 -12.66807 -12.59903 -12.39389 -12.24111 -11.98654 -11.84564 -11.75104 -11.55361 -11.28716 -10.52118 -10.45922 -10.01874 -9.70046 -9.47753 -9.40950 -8.05770 -6.14028 0.52429 0.60695 1.26965 1.43774 1.47402 1.55767 1.68271 2.39390 2.53004 2.98347 3.25525 3.42609 3.58642 3.88704 3.98419 4.05310 4.11492 4.19594 4.21911 4.25348 4.37855 4.52020 4.56907 4.72353 4.77268 4.79215 4.84603 4.90017 4.95398 5.00379 5.03334 5.16975 5.23502 5.27411 5.48669 5.65174 5.65829 5.70622 5.70840 5.81896 5.83881 5.96000 6.21718 6.24071 6.60195 6.81685 6.98628 7.32186 7.53269 9.01874 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011004 B = 0.006057 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.963106 B = 4621.630035 C = 6448.806678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.138 3.862 4 N -0.584 5.584 5 C 0.255 3.745 6 C -0.511 4.511 7 H 0.050 0.950 8 C 0.027 3.973 9 N -0.921 5.921 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.283 1.283 14 C 0.487 3.513 15 O -0.591 6.591 16 C 0.131 3.869 17 C -0.130 4.130 18 O -0.518 6.518 19 C -0.083 4.083 20 C -0.079 4.079 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.120 4.120 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.072 0.928 31 H -0.002 1.002 32 H 0.057 0.943 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.374 0.626 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -8.194 -1.391 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.198 4.198 3 C 0.015 3.985 4 N -0.313 5.313 5 C 0.135 3.865 6 C -0.550 4.550 7 H 0.068 0.932 8 C -0.173 4.173 9 N -0.561 5.561 10 Si 0.776 3.224 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.210 1.210 14 C 0.275 3.725 15 O -0.474 6.474 16 C 0.087 3.913 17 C -0.187 4.187 18 O -0.323 6.323 19 C -0.121 4.121 20 C -0.079 4.079 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.138 4.138 26 H 0.137 0.863 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.223 0.777 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.401 -8.728 -1.307 12.184 hybrid contribution 0.024 1.611 -0.350 1.649 sum 8.425 -7.117 -1.657 11.152 Atomic orbital electron populations 1.24018 0.95001 1.03049 0.98423 1.23181 0.96756 0.97978 1.01900 1.20515 0.91927 0.96034 0.90010 1.48303 1.13313 1.54468 1.15186 1.19319 0.94029 0.92670 0.80453 1.21422 1.38629 0.94575 1.00360 0.93177 1.25444 0.95212 1.01584 0.95017 1.70030 1.43362 1.37090 1.05666 0.85660 0.77665 0.81169 0.77940 1.19304 1.21391 1.20951 1.21808 0.83051 0.77207 0.90423 1.90567 1.76286 1.51223 1.29280 1.21128 0.92214 0.88728 0.89246 1.21794 1.02037 0.95147 0.99691 1.86928 1.86210 1.15964 1.43227 1.20975 0.91793 1.03803 0.95571 1.19677 0.97135 0.94138 0.96910 1.21245 0.99046 0.96433 0.97518 1.21406 0.96983 1.00008 0.95973 1.21438 1.00401 0.92520 1.00529 1.21375 0.98712 0.98255 0.96431 1.21183 0.97231 0.98497 0.96894 0.86281 0.87938 0.88223 0.90185 0.91000 0.98402 0.92511 0.93041 0.90106 0.93031 0.90115 0.77739 0.91052 0.89551 0.85226 0.83883 0.84047 0.84853 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 14.32 67.79 0.97 -3.60 16 2 C -0.18 -5.87 9.81 25.65 0.25 -5.61 16 3 C 0.14 5.19 5.84 85.63 0.50 5.69 16 4 N -0.58 -24.56 2.45 -830.52 -2.04 -26.59 16 5 C 0.26 12.23 4.61 85.63 0.39 12.63 16 6 C -0.51 -25.79 7.07 25.60 0.18 -25.61 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C 0.03 1.40 5.46 84.65 0.46 1.86 16 9 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 10 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 C 0.49 19.76 6.62 87.66 0.58 20.34 16 15 O -0.59 -25.56 15.54 -3.01 -0.05 -25.61 16 16 C 0.13 4.67 0.65 -11.54 -0.01 4.67 16 17 C -0.13 -4.29 7.83 71.98 0.56 -3.72 16 18 O -0.52 -20.67 8.31 -148.98 -1.24 -21.91 16 19 C -0.08 -2.57 4.15 29.85 0.12 -2.44 16 20 C -0.08 -2.21 4.25 -19.87 -0.08 -2.29 16 21 C -0.12 -3.06 7.85 22.27 0.17 -2.89 16 22 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 23 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 24 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 25 C -0.12 -3.32 9.40 22.27 0.21 -3.11 16 26 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 27 H 0.10 2.71 7.84 -2.91 -0.02 2.68 16 28 H 0.10 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.08 3.01 7.69 -2.39 -0.02 2.99 16 30 H 0.07 2.74 7.51 -2.39 -0.02 2.72 16 31 H 0.00 -0.11 8.07 -2.39 -0.02 -0.13 16 32 H 0.06 2.87 4.20 -2.38 -0.01 2.86 16 33 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.08 2.56 6.14 -2.39 -0.01 2.54 16 35 H 0.05 1.91 6.58 -2.39 -0.02 1.89 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.37 14.29 8.29 -74.05 -0.61 13.67 16 38 H 0.07 2.21 8.09 -2.39 -0.02 2.19 16 39 H 0.09 2.65 7.67 -2.39 -0.02 2.63 16 40 H 0.13 2.82 8.03 -2.91 -0.02 2.79 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -61.23 361.16 4.36 -56.88 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.37 Total: 36.60 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.99 Total: -12.07 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.75 Total: -77.71 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -1.28 Total: -47.51 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -61.23 4.36 -56.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293925316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.196 kcal (2) G-P(sol) polarization free energy of solvation -61.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds