Wall clock time and date at job start Tue Mar 31 2020 10:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99507 * 2 1 4 4 C 1.53001 * 109.47362 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47041 * 239.99723 * 3 2 1 6 6 C 1.50699 * 109.47000 * 119.99905 * 3 2 1 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99874 * 179.97438 * 6 3 2 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 3 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38210 * 120.12957 * 359.67795 * 11 10 9 13 13 C 1.38771 * 120.08124 * 0.59791 * 12 11 10 14 14 O 1.35895 * 120.02297 * 179.70093 * 13 12 11 15 15 C 1.42900 * 116.99754 * 359.72087 * 14 13 12 16 16 C 1.52998 * 109.47222 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47324 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00159 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46927 * 89.99699 * 21 19 17 23 23 H 1.48495 * 109.47210 * 210.00104 * 21 19 17 24 24 H 1.48502 * 109.46953 * 330.00160 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42449 * 13 12 11 26 26 H 1.07992 * 120.00523 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99504 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99916 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46946 * 180.02562 * 4 3 2 30 30 H 1.09008 * 109.46927 * 300.00209 * 4 3 2 31 31 H 1.08997 * 109.46856 * 59.99909 * 4 3 2 32 32 H 1.09001 * 109.46998 * 300.00718 * 5 3 2 33 33 H 1.09008 * 109.47000 * 59.99942 * 5 3 2 34 34 H 1.09000 * 109.47314 * 180.02562 * 5 3 2 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 3 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.07998 * 119.96326 * 180.29751 * 12 11 10 39 39 H 1.09001 * 109.47255 * 300.00595 * 15 14 13 40 40 H 1.09007 * 109.47126 * 60.00411 * 15 14 13 41 41 H 1.09001 * 109.47272 * 300.00316 * 16 15 14 42 42 H 1.08994 * 109.47017 * 59.99801 * 16 15 14 43 43 H 0.97002 * 120.00033 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25512 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4681 -0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9298 1.3851 1.2305 7 8 2.9346 0.4722 2.0291 8 7 3.6993 2.4709 1.4435 9 6 4.5855 2.4989 2.5258 10 6 4.8484 3.6967 3.1788 11 6 5.7237 3.7244 4.2469 12 6 6.3350 2.5604 4.6732 13 6 6.0805 1.3621 4.0212 14 8 6.6869 0.2194 4.4376 15 6 7.5790 0.3262 5.5488 16 6 8.1615 -1.0517 5.8695 17 6 9.1018 -0.9392 7.0417 18 1 9.2671 0.0191 7.5114 19 6 9.7503 -2.0600 7.5154 20 7 9.5478 -3.2274 6.9445 21 14 10.9153 -1.9207 8.9690 22 1 10.1599 -2.1290 10.2304 23 1 11.9779 -2.9514 8.8522 24 1 11.5341 -0.5708 8.9797 25 6 5.2030 1.3304 2.9485 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6141 3.4120 -0.0011 30 1 0.4428 2.4100 -0.8909 31 1 0.4422 2.4104 0.8891 32 1 3.6514 0.5577 -1.2492 33 1 2.3164 1.3284 -2.1393 34 1 3.4884 2.3301 -1.2490 35 1 3.6388 3.2329 0.8464 36 1 4.3680 4.6068 2.8509 37 1 5.9271 4.6565 4.7530 38 1 7.0152 2.5843 5.5117 39 1 8.3879 1.0135 5.3006 40 1 7.0359 0.7023 6.4159 41 1 7.3529 -1.7393 6.1175 42 1 8.7046 -1.4274 5.0023 43 1 10.0044 -4.0158 7.2775 44 1 5.0007 0.3980 2.4425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294522441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:29 Heat of formation + Delta-G solvation = -38.749056 kcal Electronic energy + Delta-G solvation = -23843.102412 eV Core-core repulsion = 20340.040026 eV Total energy + Delta-G solvation = -3503.062386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97748 -39.47495 -37.50837 -36.44254 -34.63734 -33.32984 -31.34416 -30.83022 -29.45393 -28.88534 -27.86324 -25.11513 -24.57762 -23.04216 -22.14540 -21.28094 -20.21827 -19.02649 -18.22690 -17.17699 -16.48931 -16.22632 -15.73076 -15.67409 -15.27006 -15.16467 -15.04619 -14.57866 -14.41953 -14.03824 -13.50708 -13.09245 -12.84473 -12.77254 -12.64144 -12.53413 -12.30260 -12.24298 -11.77196 -11.65916 -11.60725 -11.39724 -11.08937 -10.91016 -10.80652 -10.53464 -10.29904 -9.94817 -9.80132 -9.63563 -9.58309 -9.26930 -8.42904 -8.23005 -7.80387 -6.07497 -4.12192 1.36133 1.65196 1.94143 2.47888 2.90385 3.29294 3.34986 3.37871 3.85965 3.98535 4.15275 4.32383 4.43998 4.51475 4.65927 5.00609 5.05947 5.06959 5.19637 5.23256 5.28755 5.29469 5.32128 5.38442 5.47881 5.54643 5.68700 5.70465 5.77410 5.91080 6.05858 6.07386 6.28520 6.33849 6.38272 6.45376 6.54543 6.61509 6.77112 6.99719 7.22646 7.54357 7.68057 7.84233 7.95789 8.10172 8.26852 8.93477 9.51882 11.04137 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002588 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.695661 B =10815.674846 C =11724.777068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.053 4.053 4 C -0.145 4.145 5 C -0.139 4.139 6 C 0.520 3.480 7 O -0.503 6.503 8 N -0.671 5.671 9 C 0.178 3.822 10 C -0.197 4.197 11 C -0.061 4.061 12 C -0.226 4.226 13 C 0.165 3.835 14 O -0.312 6.312 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.164 4.164 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.263 0.737 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.408 15.669 -17.156 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.144 4.144 3 C -0.056 4.056 4 C -0.203 4.203 5 C -0.196 4.196 6 C 0.307 3.693 7 O -0.375 6.375 8 N -0.317 5.317 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.080 4.080 12 C -0.246 4.246 13 C 0.117 3.883 14 O -0.225 6.225 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.185 4.185 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.390 14.563 -16.682 27.550 hybrid contribution 0.714 0.514 0.730 1.143 sum -15.676 15.077 -15.953 26.973 Atomic orbital electron populations 1.23972 0.95810 1.02315 1.00707 1.22512 0.95693 0.96560 0.99666 1.19908 0.95635 0.96360 0.93728 1.21983 0.98848 0.96076 1.03369 1.21839 0.99324 1.02859 0.95571 1.20648 0.79605 0.81853 0.87187 1.90795 1.64187 1.37093 1.45424 1.43483 1.39554 1.19712 1.28905 1.17293 0.91016 0.93947 0.89296 1.20609 1.04938 0.96552 0.99666 1.20659 0.94730 0.97551 0.95020 1.21384 1.06393 0.92589 1.04190 1.18955 0.90950 0.86169 0.92250 1.86192 1.57292 1.29267 1.49759 1.23352 0.89723 1.03205 0.84620 1.19129 0.96000 0.88927 0.97193 1.20969 1.25971 0.94705 1.14765 0.92352 1.24996 0.96862 0.95198 0.97166 1.69980 1.42761 0.99044 1.40962 0.86485 0.80479 0.77904 0.82501 1.20493 1.21058 1.19767 1.20253 0.99413 0.99020 0.99802 0.87948 0.88058 0.86525 0.91867 0.90716 0.91484 0.91484 0.90924 0.91767 0.75549 0.86149 0.85701 0.85034 0.93044 0.93047 0.95352 0.95383 0.92709 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 13.70 29.01 0.40 -1.11 16 2 C -0.13 -1.18 8.00 -36.03 -0.29 -1.47 16 3 C -0.05 -0.44 0.84 -156.81 -0.13 -0.57 16 4 C -0.15 -0.83 7.02 37.16 0.26 -0.57 16 5 C -0.14 -0.87 8.36 37.16 0.31 -0.56 16 6 C 0.52 6.28 6.21 -10.99 -0.07 6.21 16 7 O -0.50 -8.53 13.72 5.55 0.08 -8.45 16 8 N -0.67 -7.04 5.12 -9.88 -0.05 -7.09 16 9 C 0.18 2.47 6.28 -83.72 -0.53 1.94 16 10 C -0.20 -2.38 9.96 -39.37 -0.39 -2.77 16 11 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 12 C -0.23 -3.64 9.04 -39.39 -0.36 -4.00 16 13 C 0.16 3.10 6.68 -39.24 -0.26 2.84 16 14 O -0.31 -6.90 10.13 -19.41 -0.20 -7.09 16 15 C 0.06 1.45 4.68 37.16 0.17 1.62 16 16 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.16 -2.87 8.59 -39.25 -0.34 -3.21 16 26 H 0.10 0.66 5.69 -52.49 -0.30 0.36 16 27 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.06 0.25 7.46 -51.93 -0.39 -0.13 16 30 H 0.07 0.32 7.50 -51.92 -0.39 -0.07 16 31 H 0.07 0.45 7.50 -51.93 -0.39 0.06 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 35 H 0.41 2.68 7.68 -40.82 -0.31 2.37 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 39 H 0.05 1.07 7.67 -51.93 -0.40 0.68 16 40 H 0.05 1.09 7.65 -51.92 -0.40 0.69 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.14 2.63 6.41 -52.49 -0.34 2.29 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -34.05 364.80 -7.70 -41.74 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.56 Total: 1.00 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.18 Total: -15.92 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.69 Total: -33.32 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.12 Total: -15.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.05 -7.70 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294522441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.995 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds