Wall clock time and date at job start Tue Mar 31 2020 10:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99507 * 2 1 4 4 C 1.53001 * 109.47362 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47041 * 239.99723 * 3 2 1 6 6 C 1.50699 * 109.47000 * 119.99905 * 3 2 1 7 7 O 1.21288 * 119.99873 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99874 * 179.97438 * 6 3 2 9 9 C 1.39917 * 120.00075 * 185.27630 * 8 6 3 10 10 C 1.38933 * 120.04163 * 213.30012 * 9 8 6 11 11 C 1.38126 * 120.03704 * 180.02562 * 10 9 8 12 12 C 1.38210 * 120.12957 * 359.67795 * 11 10 9 13 13 C 1.38771 * 120.08124 * 0.59791 * 12 11 10 14 14 O 1.35895 * 120.02297 * 179.70093 * 13 12 11 15 15 C 1.42900 * 116.99754 * 359.72087 * 14 13 12 16 16 C 1.52998 * 109.47222 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47324 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00159 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46927 * 89.99699 * 21 19 17 23 23 H 1.48495 * 109.47210 * 210.00104 * 21 19 17 24 24 H 1.48502 * 109.46953 * 330.00160 * 21 19 17 25 25 C 1.38631 * 119.95633 * 359.42449 * 13 12 11 26 26 H 1.07992 * 120.00523 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99504 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99916 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46946 * 180.02562 * 4 3 2 30 30 H 1.09008 * 109.46927 * 300.00209 * 4 3 2 31 31 H 1.08997 * 109.46856 * 59.99909 * 4 3 2 32 32 H 1.09001 * 109.46998 * 300.00718 * 5 3 2 33 33 H 1.09008 * 109.47000 * 59.99942 * 5 3 2 34 34 H 1.09000 * 109.47314 * 180.02562 * 5 3 2 35 35 H 0.96997 * 120.00199 * 5.26862 * 8 6 3 36 36 H 1.08000 * 119.98133 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.93323 * 179.97438 * 11 10 9 38 38 H 1.07998 * 119.96326 * 180.29751 * 12 11 10 39 39 H 1.09001 * 109.47255 * 300.00595 * 15 14 13 40 40 H 1.09007 * 109.47126 * 60.00411 * 15 14 13 41 41 H 1.09001 * 109.47272 * 300.00316 * 16 15 14 42 42 H 1.08994 * 109.47017 * 59.99801 * 16 15 14 43 43 H 0.97002 * 120.00033 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.05730 * 180.25512 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4681 -0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9298 1.3851 1.2305 7 8 2.9346 0.4722 2.0291 8 7 3.6993 2.4709 1.4435 9 6 4.5855 2.4989 2.5258 10 6 4.8484 3.6967 3.1788 11 6 5.7237 3.7244 4.2469 12 6 6.3350 2.5604 4.6732 13 6 6.0805 1.3621 4.0212 14 8 6.6869 0.2194 4.4376 15 6 7.5790 0.3262 5.5488 16 6 8.1615 -1.0517 5.8695 17 6 9.1018 -0.9392 7.0417 18 1 9.2671 0.0191 7.5114 19 6 9.7503 -2.0600 7.5154 20 7 9.5478 -3.2274 6.9445 21 14 10.9153 -1.9207 8.9690 22 1 10.1599 -2.1290 10.2304 23 1 11.9779 -2.9514 8.8522 24 1 11.5341 -0.5708 8.9797 25 6 5.2030 1.3304 2.9485 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6141 3.4120 -0.0011 30 1 0.4428 2.4100 -0.8909 31 1 0.4422 2.4104 0.8891 32 1 3.6514 0.5577 -1.2492 33 1 2.3164 1.3284 -2.1393 34 1 3.4884 2.3301 -1.2490 35 1 3.6388 3.2329 0.8464 36 1 4.3680 4.6068 2.8509 37 1 5.9271 4.6565 4.7530 38 1 7.0152 2.5843 5.5117 39 1 8.3879 1.0135 5.3006 40 1 7.0359 0.7023 6.4159 41 1 7.3529 -1.7393 6.1175 42 1 8.7046 -1.4274 5.0023 43 1 10.0044 -4.0158 7.2775 44 1 5.0007 0.3980 2.4425 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294522441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:29 Heat of formation + Delta-G solvation = -60.375744 kcal Electronic energy + Delta-G solvation = -23844.040216 eV Core-core repulsion = 20340.040026 eV Total energy + Delta-G solvation = -3504.000190 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97213 -40.77971 -38.73204 -37.32957 -35.81531 -35.37916 -32.62368 -32.06235 -30.91877 -30.02626 -28.31722 -27.04339 -25.47427 -24.15210 -23.58910 -22.65770 -21.50214 -20.01578 -19.38047 -18.43632 -17.96015 -17.40553 -17.01981 -16.91249 -16.83721 -16.53925 -16.11387 -15.97375 -15.34199 -14.86888 -14.56746 -14.47069 -14.34366 -14.30324 -13.51403 -13.38920 -13.30610 -13.20362 -13.10941 -12.76395 -12.71389 -12.64199 -12.56716 -12.21793 -12.16318 -11.80591 -11.70789 -11.60765 -11.43829 -11.24932 -10.87205 -10.64541 -10.35028 -9.44880 -9.03589 -8.28323 -6.42953 0.20521 0.46405 1.23454 1.39539 1.42746 1.51643 1.53940 1.99228 2.30013 2.52463 2.80797 3.05885 3.47760 3.69903 3.88962 3.93718 4.04299 4.15311 4.18667 4.23835 4.24098 4.41416 4.43246 4.55515 4.67846 4.68684 4.73084 4.76171 4.82993 4.84929 5.06076 5.20979 5.23767 5.26285 5.27476 5.31238 5.38793 5.42266 5.49638 5.66147 5.66445 5.78364 5.89381 6.04473 6.36509 6.53705 6.72025 7.07898 7.27452 8.85265 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002588 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.695661 B =10815.674846 C =11724.777068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C -0.044 4.044 4 C -0.144 4.144 5 C -0.137 4.137 6 C 0.515 3.485 7 O -0.562 6.562 8 N -0.653 5.653 9 C 0.179 3.821 10 C -0.174 4.174 11 C -0.051 4.051 12 C -0.235 4.235 13 C 0.123 3.877 14 O -0.347 6.347 15 C 0.085 3.915 16 C 0.027 3.973 17 C -0.545 4.545 18 H 0.074 0.926 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.980 3.020 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.256 1.256 25 C -0.189 4.189 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.431 0.569 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.061 0.939 41 H -0.007 1.007 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 20.251 -17.429 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C -0.047 4.047 4 C -0.201 4.201 5 C -0.194 4.194 6 C 0.304 3.696 7 O -0.438 6.438 8 N -0.301 5.301 9 C 0.084 3.916 10 C -0.194 4.194 11 C -0.070 4.070 12 C -0.254 4.254 13 C 0.077 3.923 14 O -0.262 6.262 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.583 4.583 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.803 3.197 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.180 1.180 25 C -0.210 4.210 26 H 0.143 0.857 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.272 0.728 36 H 0.188 0.812 37 H 0.185 0.815 38 H 0.151 0.849 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.213 19.209 -17.005 30.894 hybrid contribution 0.824 -0.882 0.691 1.391 sum -16.389 18.326 -16.314 29.507 Atomic orbital electron populations 1.24194 0.95262 1.03528 0.98447 1.22556 0.96468 0.96570 1.01811 1.19937 0.95712 0.96898 0.92203 1.22037 0.98448 0.95617 1.03963 1.21883 0.99123 1.03115 0.95301 1.21524 0.79420 0.81008 0.87635 1.90781 1.66132 1.39183 1.47727 1.43394 1.38115 1.20262 1.28311 1.17457 0.90679 0.93400 0.90069 1.21145 1.03198 0.97147 0.97903 1.21163 0.93257 0.97736 0.94802 1.21534 1.07046 0.92642 1.04197 1.19265 0.92696 0.86233 0.94073 1.86095 1.58195 1.31923 1.49949 1.22901 0.90408 1.00078 0.85535 1.18980 0.94801 0.91157 0.96081 1.21394 1.26175 0.95614 1.15098 0.90772 1.26120 0.98756 0.94571 1.00517 1.70141 1.44096 1.00103 1.42957 0.85224 0.77773 0.78635 0.78059 1.19529 1.20623 1.17994 1.20223 1.00859 0.99574 1.00337 0.85749 0.87799 0.89109 0.89401 0.88583 0.92390 0.93640 0.88897 0.89619 0.72804 0.81183 0.81488 0.84907 0.91600 0.92058 0.98861 0.98500 0.92421 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 13.70 67.78 0.93 -1.74 16 2 C -0.16 -2.99 8.00 25.64 0.21 -2.79 16 3 C -0.04 -0.68 0.84 -53.67 -0.05 -0.73 16 4 C -0.14 -1.16 7.02 71.98 0.51 -0.65 16 5 C -0.14 -1.50 8.36 71.98 0.60 -0.90 16 6 C 0.52 12.49 6.21 87.66 0.54 13.03 16 7 O -0.56 -20.50 13.72 -3.05 -0.04 -20.54 16 8 N -0.65 -12.52 5.12 -303.55 -1.55 -14.08 16 9 C 0.18 4.72 6.28 38.14 0.24 4.96 16 10 C -0.17 -3.46 9.96 22.41 0.22 -3.23 16 11 C -0.05 -1.14 10.03 22.24 0.22 -0.91 16 12 C -0.23 -7.38 9.04 22.39 0.20 -7.18 16 13 C 0.12 4.88 6.68 22.49 0.15 5.03 16 14 O -0.35 -16.59 10.13 -92.36 -0.94 -17.53 16 15 C 0.08 3.98 4.68 71.98 0.34 4.32 16 16 C 0.03 1.57 5.34 29.85 0.16 1.72 16 17 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 18 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 19 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 20 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 21 Si 0.98 44.46 29.54 68.60 2.03 46.48 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 C -0.19 -6.98 8.59 22.49 0.19 -6.79 16 26 H 0.12 1.29 5.69 -2.91 -0.02 1.27 16 27 H 0.10 1.46 8.06 -2.91 -0.02 1.43 16 28 H 0.09 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.09 0.28 7.46 -2.39 -0.02 0.27 16 30 H 0.10 0.41 7.50 -2.38 -0.02 0.40 16 31 H 0.06 0.60 7.50 -2.39 -0.02 0.59 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 0.55 7.69 -2.39 -0.02 0.53 16 35 H 0.43 3.99 7.68 -92.71 -0.71 3.28 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 39 H 0.07 2.83 7.67 -2.39 -0.02 2.82 16 40 H 0.06 2.69 7.65 -2.38 -0.02 2.67 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.11 4.54 6.41 -2.91 -0.02 4.52 16 Total: -1.00 -81.93 364.80 5.22 -76.71 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.28 Total: 14.47 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 5.16 Total: -27.02 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.27 Total: -72.57 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.98 Total: -38.07 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -81.93 5.22 -76.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294522441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.333 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds