Wall clock time and date at job start Tue Mar 31 2020 09:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46731 * 2 1 4 4 C 1.35149 * 125.48401 * 89.98675 * 3 2 1 5 5 C 1.40316 * 107.20825 * 179.81189 * 4 3 2 6 6 C 1.37956 * 106.52402 * 0.35412 * 5 4 3 7 7 C 1.41605 * 126.10165 * 179.90920 * 6 5 4 8 8 C 1.35629 * 119.99687 * 179.43606 * 7 6 5 9 9 C 1.41552 * 119.99787 * 180.27593 * 8 7 6 10 10 O 1.21783 * 119.99952 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99977 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99858 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.02090 * 325.70737 * 12 11 9 14 14 C 1.53875 * 110.02916 * 87.09812 * 12 11 9 15 15 C 1.54266 * 106.60152 * 119.28379 * 14 12 11 16 16 C 1.54888 * 104.19399 * 23.60840 * 15 14 12 17 17 H 1.08998 * 110.75950 * 80.55982 * 16 15 14 18 18 C 1.50702 * 110.75464 * 203.74501 * 16 15 14 19 19 H 1.07999 * 120.00008 * 118.54975 * 18 16 15 20 20 C 1.37874 * 119.99850 * 298.54520 * 18 16 15 21 21 N 1.31513 * 119.99612 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 120.00190 * 359.97438 * 20 18 16 23 23 H 1.48496 * 109.46858 * 90.00040 * 22 20 18 24 24 H 1.48500 * 109.47001 * 209.99952 * 22 20 18 25 25 H 1.48502 * 109.46985 * 329.99938 * 22 20 18 26 26 C 1.54268 * 110.03206 * 204.30969 * 12 11 9 27 27 O 1.34016 * 125.47936 * 270.02669 * 3 2 1 28 28 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47025 * 300.00032 * 1 2 3 30 30 H 1.08996 * 109.47555 * 60.00140 * 1 2 3 31 31 H 1.08994 * 109.47309 * 240.00280 * 2 1 3 32 32 H 1.08996 * 109.47555 * 119.99860 * 2 1 3 33 33 H 1.08001 * 126.39776 * 0.03048 * 4 3 2 34 34 H 1.07999 * 126.73911 * 180.22662 * 5 4 3 35 35 H 1.08002 * 120.00352 * 359.71606 * 7 6 5 36 36 H 1.07991 * 120.00430 * 0.27395 * 8 7 6 37 37 H 0.97000 * 120.00323 * 0.02562 * 11 9 8 38 38 H 1.09008 * 110.03308 * 238.56742 * 14 12 11 39 39 H 1.09002 * 110.03615 * 359.94496 * 14 12 11 40 40 H 1.09000 * 110.48954 * 142.28663 * 15 14 12 41 41 H 1.09003 * 110.48598 * 264.93195 * 15 14 12 42 42 H 0.97011 * 119.99895 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.48808 * 335.79055 * 26 12 11 44 44 H 1.09001 * 110.48604 * 98.42929 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2935 2.1606 1.1005 5 6 2.7417 3.4154 0.6605 6 6 2.7227 3.3774 -0.7184 7 6 3.0954 4.4315 -1.5874 8 6 3.0392 4.2548 -2.9309 9 6 3.4173 5.3066 -3.7995 10 8 3.7935 6.3700 -3.3404 11 7 3.3620 5.1308 -5.1346 12 6 3.7528 6.2196 -6.0336 13 1 3.4790 7.1801 -5.5974 14 6 5.2690 6.1711 -6.2920 15 6 5.4510 5.9692 -7.8106 16 6 4.1352 6.5073 -8.4256 17 1 4.1593 7.5945 -8.4989 18 6 3.8851 5.8885 -9.7768 19 1 3.0006 5.2911 -9.9418 20 6 4.7854 6.0851 -10.8023 21 7 4.5669 5.5455 -11.9816 22 14 6.3148 7.1191 -10.5172 23 1 7.4208 6.2473 -10.0461 24 1 6.7108 7.7780 -11.7877 25 1 6.0286 8.1537 -9.4912 26 6 3.0654 6.0461 -7.4037 27 8 2.2910 2.1544 -1.0913 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 2.1817 1.8439 2.1269 34 1 3.0408 4.2481 1.2797 35 1 3.4287 5.3747 -1.1803 36 1 2.7060 3.3117 -3.3381 37 1 3.0627 4.2837 -5.5003 38 1 5.7308 7.1085 -5.9820 39 1 5.7141 5.3381 -5.7479 40 1 6.3039 6.5434 -8.1723 41 1 5.5759 4.9115 -8.0426 42 1 5.2005 5.6835 -12.7031 43 1 2.8046 5.0009 -7.5701 44 1 2.1785 6.6764 -7.4681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295578695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:22:47 Heat of formation + Delta-G solvation = -43.410295 kcal Electronic energy + Delta-G solvation = -23452.519942 eV Core-core repulsion = 19949.255430 eV Total energy + Delta-G solvation = -3503.264513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60614 -41.10442 -38.95258 -35.74131 -35.29114 -34.68829 -34.05092 -33.47988 -30.41803 -29.77967 -28.73435 -26.05114 -25.15313 -23.51557 -22.77453 -21.76583 -21.29178 -21.05928 -20.34589 -18.87032 -18.45155 -17.54212 -17.20767 -16.99863 -16.82935 -16.14742 -15.78449 -15.59406 -15.29202 -15.11809 -14.80867 -14.19745 -14.09869 -14.04122 -13.93866 -13.58133 -13.42120 -13.33688 -13.15263 -12.85652 -12.63934 -12.41111 -12.31482 -11.92117 -11.83800 -11.68657 -11.61586 -11.53692 -11.26257 -11.06207 -10.99968 -10.79200 -10.69624 -10.03285 -8.87531 -8.28323 -6.30980 -0.61167 1.07652 1.33414 1.37276 1.47213 1.67656 1.84669 2.33383 2.34846 2.43544 3.07508 3.60337 3.73984 3.84922 3.88487 3.95164 4.07966 4.08693 4.19543 4.30142 4.34999 4.55554 4.60321 4.63800 4.67386 4.71203 4.82757 4.88667 4.91204 4.93660 4.96715 5.00673 5.04620 5.10616 5.17001 5.21474 5.24337 5.33646 5.39362 5.53866 5.61889 5.66486 5.77710 6.09515 6.32630 6.60039 6.75373 7.24698 7.34665 8.88267 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.002354 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.688595 B =11890.059107 C =12523.470200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.008 3.992 4 C -0.222 4.222 5 C -0.151 4.151 6 C -0.044 4.044 7 C 0.025 3.975 8 C -0.222 4.222 9 C 0.547 3.453 10 O -0.590 6.590 11 N -0.708 5.708 12 C 0.148 3.852 13 H 0.081 0.919 14 C -0.122 4.122 15 C -0.127 4.127 16 C 0.006 3.994 17 H 0.032 0.968 18 C -0.510 4.510 19 H 0.038 0.962 20 C 0.013 3.987 21 N -0.950 5.950 22 Si 0.941 3.059 23 H -0.268 1.268 24 H -0.298 1.298 25 H -0.247 1.247 26 C -0.102 4.102 27 O -0.181 6.181 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.412 0.588 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 -10.347 29.797 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.044 4.044 4 C -0.241 4.241 5 C -0.170 4.170 6 C -0.093 4.093 7 C 0.005 3.995 8 C -0.243 4.243 9 C 0.339 3.661 10 O -0.474 6.474 11 N -0.358 5.358 12 C 0.043 3.957 13 H 0.099 0.901 14 C -0.161 4.161 15 C -0.165 4.165 16 C -0.013 4.013 17 H 0.050 0.950 18 C -0.548 4.548 19 H 0.057 0.943 20 C -0.184 4.184 21 N -0.591 5.591 22 Si 0.767 3.233 23 H -0.193 1.193 24 H -0.225 1.225 25 H -0.171 1.171 26 C -0.140 4.140 27 O -0.078 6.078 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.196 0.804 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.159 0.841 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.045 -9.718 29.607 31.567 hybrid contribution 0.613 0.147 -0.887 1.088 sum -4.431 -9.571 28.721 30.596 Atomic orbital electron populations 1.21793 0.93202 1.03503 1.02180 1.20385 0.96856 0.85581 1.05753 1.23507 1.00913 0.96162 0.83793 1.21888 1.07389 0.94085 1.00696 1.22762 1.01430 1.00045 0.92730 1.19912 1.09644 0.85503 0.94199 1.20735 0.91370 0.95348 0.92035 1.21984 1.07829 1.00197 0.94279 1.17325 0.77722 0.88043 0.82964 1.90794 1.50006 1.29564 1.77073 1.46114 1.66586 1.17524 1.05543 1.21537 0.94066 0.90601 0.89509 0.90121 1.22480 0.95953 1.01912 0.95716 1.22686 0.98441 1.00681 0.94675 1.20056 0.92575 0.95867 0.92796 0.95000 1.21276 1.07346 1.31009 0.95153 0.94345 1.25817 1.01316 0.96600 0.94639 1.70046 1.38476 1.47049 1.03545 0.85942 0.80138 0.80159 0.77034 1.19306 1.22490 1.17132 1.22451 0.97981 1.01719 0.91817 1.84042 1.65128 1.22618 1.35966 0.89728 0.91841 0.93651 0.89579 0.86172 0.80429 0.80589 0.82081 0.84074 0.75154 0.91550 0.91366 0.93894 0.92379 0.92659 0.91232 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.05 -0.41 6.46 29.85 0.19 -0.21 16 3 C 0.01 0.12 6.55 24.98 0.16 0.28 16 4 C -0.22 -2.93 10.76 22.06 0.24 -2.70 16 5 C -0.15 -2.34 10.90 22.71 0.25 -2.10 16 6 C -0.04 -0.88 6.84 23.03 0.16 -0.72 16 7 C 0.03 0.54 9.39 22.50 0.21 0.75 16 8 C -0.22 -5.19 9.41 22.48 0.21 -4.98 16 9 C 0.55 16.02 7.55 85.06 0.64 16.67 16 10 O -0.59 -21.17 15.78 -4.61 -0.07 -21.24 16 11 N -0.71 -20.02 4.98 -448.08 -2.23 -22.25 16 12 C 0.15 4.91 3.23 45.72 0.15 5.06 16 13 H 0.08 2.80 7.59 -2.39 -0.02 2.78 16 14 C -0.12 -4.23 6.59 31.32 0.21 -4.02 16 15 C -0.13 -5.22 5.08 31.67 0.16 -5.06 16 16 C 0.01 0.28 2.30 -10.22 -0.02 0.26 16 17 H 0.03 1.47 7.37 -2.39 -0.02 1.45 16 18 C -0.51 -28.53 9.12 25.60 0.23 -28.29 16 19 H 0.04 2.35 8.03 -2.91 -0.02 2.33 16 20 C 0.01 0.76 5.46 84.65 0.46 1.22 16 21 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 22 Si 0.94 45.00 24.46 68.60 1.68 46.68 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 25 H -0.25 -11.05 6.48 99.48 0.64 -10.41 16 26 C -0.10 -3.77 5.95 31.70 0.19 -3.58 16 27 O -0.18 -3.68 10.18 -6.15 -0.06 -3.74 16 28 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.16 3.32 7.46 -2.91 -0.02 3.30 16 36 H 0.14 2.85 7.72 -2.91 -0.02 2.83 16 37 H 0.41 9.78 8.31 -92.71 -0.77 9.01 16 38 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.07 2.22 7.92 -2.39 -0.02 2.20 16 40 H 0.04 1.78 4.91 -2.39 -0.01 1.77 16 41 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 42 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.07 2.55 7.63 -2.39 -0.02 2.53 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -71.37 361.91 3.93 -67.44 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.16 Total: 20.01 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.15 Total: -27.86 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.93 Total: -81.28 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.14 Total: -24.99 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.68 Total: 46.68 kcal Total: -71.37 3.93 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295578695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.035 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds