Wall clock time and date at job start Tue Mar 31 2020 09:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47045 * 2 1 4 4 C 1.53042 * 109.46010 * 175.00422 * 3 2 1 5 5 C 1.53192 * 109.31232 * 181.38583 * 4 3 2 6 6 N 1.46918 * 108.77433 * 305.36098 * 5 4 3 7 7 C 1.34781 * 120.62945 * 233.59047 * 6 5 4 8 8 O 1.21592 * 120.00219 * 356.11955 * 7 6 5 9 9 C 1.47540 * 119.99812 * 176.12660 * 7 6 5 10 10 C 1.39663 * 120.20004 * 53.69867 * 9 7 6 11 11 C 1.37830 * 119.91807 * 180.25367 * 10 9 7 12 12 C 1.38570 * 120.32463 * 359.72041 * 11 10 9 13 13 C 1.38020 * 120.40199 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.07317 * 359.97438 * 13 12 11 15 15 O 1.35519 * 120.16103 * 180.02562 * 14 13 12 16 16 C 1.34809 * 116.99988 * 5.92295 * 15 14 13 17 17 H 1.07994 * 120.00380 * 354.86062 * 16 15 14 18 18 C 1.38704 * 119.99709 * 174.58516 * 16 15 14 19 19 N 1.31520 * 120.00103 * 0.27732 * 18 16 15 20 20 Si 1.86802 * 119.99724 * 180.27433 * 18 16 15 21 21 H 1.48496 * 109.47574 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47025 * 120.00721 * 20 18 16 23 23 H 1.48505 * 109.46864 * 240.00064 * 20 18 16 24 24 C 1.46923 * 118.74359 * 53.86351 * 6 5 4 25 25 C 1.53038 * 109.46011 * 295.06880 * 3 2 1 26 26 H 1.09004 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47196 * 299.99936 * 1 2 3 28 28 H 1.08998 * 109.47532 * 59.99878 * 1 2 3 29 29 H 1.08998 * 109.46764 * 239.99820 * 2 1 3 30 30 H 1.08999 * 109.47015 * 120.00209 * 2 1 3 31 31 H 1.09002 * 109.46060 * 55.03003 * 3 2 1 32 32 H 1.08997 * 109.49920 * 61.43070 * 4 3 2 33 33 H 1.09006 * 109.51850 * 301.34992 * 4 3 2 34 34 H 1.09004 * 109.58066 * 185.57426 * 5 4 3 35 35 H 1.08996 * 109.70087 * 65.22329 * 5 4 3 36 36 H 1.07999 * 120.04180 * 359.97438 * 10 9 7 37 37 H 1.08006 * 119.83614 * 179.74436 * 11 10 9 38 38 H 1.07999 * 119.79610 * 180.02562 * 12 11 10 39 39 H 1.08001 * 119.96635 * 180.02562 * 13 12 11 40 40 H 0.96997 * 119.99770 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58840 * 65.91986 * 24 6 5 42 42 H 1.08999 * 109.59349 * 186.35423 * 24 6 5 43 43 H 1.09007 * 109.49799 * 298.56584 * 25 3 2 44 44 H 1.09002 * 109.49919 * 58.66377 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5652 1.4440 0.1257 5 6 4.0693 2.8902 0.1602 6 7 3.5607 3.5966 -1.0234 7 6 4.4036 4.2470 -1.8499 8 8 5.5878 4.3129 -1.5818 9 6 3.8895 4.8792 -3.0798 10 6 2.8280 5.7844 -3.0135 11 6 2.3488 6.3676 -4.1668 12 6 2.9189 6.0648 -5.3929 13 6 3.9718 5.1761 -5.4733 14 6 4.4676 4.5789 -4.3220 15 8 5.5017 3.7064 -4.3988 16 6 6.0851 3.5533 -5.6044 17 1 5.6729 4.0492 -6.4707 18 6 7.2181 2.7633 -5.7313 19 7 7.7201 2.1593 -4.6764 20 14 8.0309 2.5573 -7.4005 21 1 7.2779 3.3347 -8.4172 22 1 9.4292 3.0530 -7.3348 23 1 8.0323 1.1206 -7.7765 24 6 2.1151 3.5856 -1.2858 25 6 1.6335 2.1269 -1.3070 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6057 1.9812 0.8422 32 1 4.0013 0.9270 -0.7291 33 1 3.8554 0.9355 1.0452 34 1 5.1593 2.8975 0.1498 35 1 3.7091 3.3834 1.0630 36 1 2.3803 6.0238 -2.0603 37 1 1.5252 7.0644 -4.1144 38 1 2.5370 6.5271 -6.2912 39 1 4.4111 4.9454 -6.4326 40 1 8.5122 1.6065 -4.7652 41 1 1.5967 4.1329 -0.4985 42 1 1.9152 4.0520 -2.2505 43 1 2.0878 1.6035 -2.1484 44 1 0.5483 2.1048 -1.4072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299093952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:34 Heat of formation + Delta-G solvation = -46.945493 kcal Electronic energy + Delta-G solvation = -25446.741705 eV Core-core repulsion = 21943.323894 eV Total energy + Delta-G solvation = -3503.417810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.04543 -38.74100 -37.24598 -36.37749 -34.31632 -32.35045 -31.66130 -30.22521 -29.91027 -28.96960 -25.63909 -25.33166 -23.22180 -23.10330 -21.62810 -21.29205 -20.19146 -18.92037 -18.05630 -17.18987 -16.33484 -15.54680 -15.08006 -14.79885 -14.64501 -14.46551 -14.24187 -13.98280 -13.89757 -13.67552 -13.58595 -13.22154 -12.92900 -12.73806 -12.24831 -12.16712 -11.99359 -11.74225 -11.72717 -11.37748 -11.16160 -11.11355 -11.03908 -10.89340 -10.79823 -10.59108 -10.44816 -10.22707 -10.16439 -9.59121 -8.98886 -8.88363 -8.22567 -8.13621 -7.33225 -6.46599 -4.06820 1.82623 2.28064 3.10738 3.12690 3.18077 3.40291 3.62376 3.92819 4.48109 4.73115 4.78018 4.82875 5.02138 5.15058 5.17307 5.22927 5.30660 5.41409 5.46506 5.50438 5.53517 5.62910 5.64384 5.73136 5.82535 5.87602 5.92257 5.99190 6.02919 6.06574 6.13840 6.15760 6.20679 6.26894 6.32266 6.55263 6.56090 6.65526 6.93904 7.00992 7.05853 7.24418 7.29250 7.67189 7.90518 7.99530 8.94037 8.96822 9.64027 10.69142 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004849 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.867559 B = 5773.162232 C = 6770.798476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.130 4.130 5 C 0.116 3.884 6 N -0.616 5.616 7 C 0.577 3.423 8 O -0.520 6.520 9 C -0.214 4.214 10 C -0.045 4.045 11 C -0.224 4.224 12 C -0.056 4.056 13 C -0.234 4.234 14 C 0.188 3.812 15 O -0.150 6.150 16 C -0.399 4.399 17 H 0.095 0.905 18 C 0.043 3.957 19 N -0.844 5.844 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.103 3.897 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.271 0.729 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.118 -0.410 6.613 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.104 4.104 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.351 5.351 7 C 0.366 3.634 8 O -0.395 6.395 9 C -0.218 4.218 10 C -0.064 4.064 11 C -0.243 4.243 12 C -0.074 4.074 13 C -0.253 4.253 14 C 0.130 3.870 15 O -0.051 6.051 16 C -0.475 4.475 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.477 5.477 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.020 4.020 25 C -0.170 4.170 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.099 -0.700 6.983 14.861 hybrid contribution 0.298 -0.125 -0.905 0.961 sum -12.802 -0.825 6.078 14.195 Atomic orbital electron populations 1.21817 0.96073 1.01282 1.01816 1.21569 0.95679 0.96499 1.01998 1.21157 0.95503 0.95805 0.97918 1.21977 0.95350 0.96938 1.02555 1.21446 1.01029 0.91232 0.86999 1.47969 1.07055 1.53642 1.26459 1.18216 0.85333 0.77513 0.82292 1.90783 1.15930 1.59160 1.73580 1.18741 1.03827 1.07919 0.91337 1.20723 0.93306 0.94464 0.97909 1.20478 1.04615 1.06583 0.92598 1.20879 0.94322 0.95231 0.97004 1.21139 1.01639 1.03827 0.98737 1.19173 0.88036 0.88061 0.91743 1.84002 1.37817 1.49310 1.33929 1.21453 1.10112 1.31769 0.84150 0.88785 1.25362 0.95668 0.95811 0.99471 1.70088 1.21079 1.27580 1.28935 0.85642 0.79247 0.78523 0.79971 1.18971 1.19997 1.20066 1.21972 0.80659 0.96780 1.02577 1.22112 1.00751 0.95994 0.98108 0.93109 0.92965 0.92387 0.91893 0.92184 0.91355 0.91145 0.91203 0.89056 0.92379 0.86680 0.87148 0.87149 0.85059 0.91909 0.92167 0.88475 0.91203 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.21 5.40 -26.73 -0.14 -1.35 16 3 C -0.09 -0.96 2.15 -90.58 -0.19 -1.16 16 4 C -0.13 -1.74 5.36 -26.61 -0.14 -1.88 16 5 C 0.12 1.81 6.42 -3.72 -0.02 1.79 16 6 N -0.62 -10.92 2.97 -173.73 -0.52 -11.43 16 7 C 0.58 13.13 6.87 -12.47 -0.09 13.04 16 8 O -0.52 -14.24 16.16 1.35 0.02 -14.21 16 9 C -0.21 -4.70 4.92 -104.81 -0.52 -5.21 16 10 C -0.05 -0.79 7.41 -39.20 -0.29 -1.08 16 11 C -0.22 -3.65 10.02 -39.61 -0.40 -4.05 16 12 C -0.06 -0.98 10.03 -39.54 -0.40 -1.38 16 13 C -0.23 -5.02 9.16 -39.44 -0.36 -5.38 16 14 C 0.19 4.65 6.64 -38.59 -0.26 4.39 16 15 O -0.15 -4.43 8.94 -3.12 -0.03 -4.46 16 16 C -0.40 -11.31 9.49 30.90 0.29 -11.01 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 18 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 19 N -0.84 -25.46 13.67 55.48 0.76 -24.70 16 20 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.10 1.43 5.53 -3.48 -0.02 1.41 16 25 C -0.13 -1.63 5.16 -26.38 -0.14 -1.76 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.50 6.53 -51.93 -0.34 0.16 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.67 7.03 -51.93 -0.36 1.31 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.12 1.68 7.32 -52.49 -0.38 1.30 16 37 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.42 4.70 -51.93 -0.24 1.18 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.74 6.50 -51.93 -0.34 0.40 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -33.90 351.11 -8.35 -42.25 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.45 Total: 5.12 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.41 Total: -13.48 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.24 Total: -36.14 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.01 Total: -18.67 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.90 -8.35 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299093952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.692 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds