Wall clock time and date at job start Tue Mar 31 2020 09:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47045 * 2 1 4 4 C 1.53042 * 109.46010 * 175.00422 * 3 2 1 5 5 C 1.53192 * 109.31232 * 181.38583 * 4 3 2 6 6 N 1.46918 * 108.77433 * 305.36098 * 5 4 3 7 7 C 1.34781 * 120.62945 * 233.59047 * 6 5 4 8 8 O 1.21592 * 120.00219 * 356.11955 * 7 6 5 9 9 C 1.47540 * 119.99812 * 176.12660 * 7 6 5 10 10 C 1.39663 * 120.20004 * 53.69867 * 9 7 6 11 11 C 1.37830 * 119.91807 * 180.25367 * 10 9 7 12 12 C 1.38570 * 120.32463 * 359.72041 * 11 10 9 13 13 C 1.38020 * 120.40199 * 0.02562 * 12 11 10 14 14 C 1.38843 * 120.07317 * 359.97438 * 13 12 11 15 15 O 1.35519 * 120.16103 * 180.02562 * 14 13 12 16 16 C 1.34809 * 116.99988 * 5.92295 * 15 14 13 17 17 H 1.07994 * 120.00380 * 354.86062 * 16 15 14 18 18 C 1.38704 * 119.99709 * 174.58516 * 16 15 14 19 19 N 1.31520 * 120.00103 * 0.27732 * 18 16 15 20 20 Si 1.86802 * 119.99724 * 180.27433 * 18 16 15 21 21 H 1.48496 * 109.47574 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47025 * 120.00721 * 20 18 16 23 23 H 1.48505 * 109.46864 * 240.00064 * 20 18 16 24 24 C 1.46923 * 118.74359 * 53.86351 * 6 5 4 25 25 C 1.53038 * 109.46011 * 295.06880 * 3 2 1 26 26 H 1.09004 * 109.47342 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47196 * 299.99936 * 1 2 3 28 28 H 1.08998 * 109.47532 * 59.99878 * 1 2 3 29 29 H 1.08998 * 109.46764 * 239.99820 * 2 1 3 30 30 H 1.08999 * 109.47015 * 120.00209 * 2 1 3 31 31 H 1.09002 * 109.46060 * 55.03003 * 3 2 1 32 32 H 1.08997 * 109.49920 * 61.43070 * 4 3 2 33 33 H 1.09006 * 109.51850 * 301.34992 * 4 3 2 34 34 H 1.09004 * 109.58066 * 185.57426 * 5 4 3 35 35 H 1.08996 * 109.70087 * 65.22329 * 5 4 3 36 36 H 1.07999 * 120.04180 * 359.97438 * 10 9 7 37 37 H 1.08006 * 119.83614 * 179.74436 * 11 10 9 38 38 H 1.07999 * 119.79610 * 180.02562 * 12 11 10 39 39 H 1.08001 * 119.96635 * 180.02562 * 13 12 11 40 40 H 0.96997 * 119.99770 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58840 * 65.91986 * 24 6 5 42 42 H 1.08999 * 109.59349 * 186.35423 * 24 6 5 43 43 H 1.09007 * 109.49799 * 298.56584 * 25 3 2 44 44 H 1.09002 * 109.49919 * 58.66377 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5652 1.4440 0.1257 5 6 4.0693 2.8902 0.1602 6 7 3.5607 3.5966 -1.0234 7 6 4.4036 4.2470 -1.8499 8 8 5.5878 4.3129 -1.5818 9 6 3.8895 4.8792 -3.0798 10 6 2.8280 5.7844 -3.0135 11 6 2.3488 6.3676 -4.1668 12 6 2.9189 6.0648 -5.3929 13 6 3.9718 5.1761 -5.4733 14 6 4.4676 4.5789 -4.3220 15 8 5.5017 3.7064 -4.3988 16 6 6.0851 3.5533 -5.6044 17 1 5.6729 4.0492 -6.4707 18 6 7.2181 2.7633 -5.7313 19 7 7.7201 2.1593 -4.6764 20 14 8.0309 2.5573 -7.4005 21 1 7.2779 3.3347 -8.4172 22 1 9.4292 3.0530 -7.3348 23 1 8.0323 1.1206 -7.7765 24 6 2.1151 3.5856 -1.2858 25 6 1.6335 2.1269 -1.3070 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6057 1.9812 0.8422 32 1 4.0013 0.9270 -0.7291 33 1 3.8554 0.9355 1.0452 34 1 5.1593 2.8975 0.1498 35 1 3.7091 3.3834 1.0630 36 1 2.3803 6.0238 -2.0603 37 1 1.5252 7.0644 -4.1144 38 1 2.5370 6.5271 -6.2912 39 1 4.4111 4.9454 -6.4326 40 1 8.5122 1.6065 -4.7652 41 1 1.5967 4.1329 -0.4985 42 1 1.9152 4.0520 -2.2505 43 1 2.0878 1.6035 -2.1484 44 1 0.5483 2.1048 -1.4072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299093952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:33 Heat of formation + Delta-G solvation = -68.814734 kcal Electronic energy + Delta-G solvation = -25447.690026 eV Core-core repulsion = 21943.323894 eV Total energy + Delta-G solvation = -3504.366132 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61254 -40.31392 -38.71937 -38.08580 -35.58313 -34.36179 -32.98894 -31.47343 -31.13913 -30.61525 -27.47452 -26.69249 -24.47740 -24.40633 -23.21079 -22.54919 -21.34063 -20.32598 -19.92250 -18.82540 -18.01379 -17.13027 -16.62390 -16.40630 -15.92638 -15.76344 -15.62607 -15.46091 -15.25779 -15.11783 -14.85465 -14.63380 -14.39811 -14.26804 -13.74172 -13.56716 -13.35095 -13.07483 -12.90673 -12.73841 -12.65990 -12.55182 -12.32796 -12.20627 -12.11553 -11.98788 -11.54387 -11.46339 -11.29944 -11.18347 -10.86899 -10.71005 -9.78649 -9.57567 -9.06384 -8.49746 -6.20392 0.24188 0.68530 1.30312 1.40875 1.50475 1.74619 2.12941 2.15915 2.79878 3.11026 3.42077 3.63199 3.76597 3.79973 3.94035 4.10013 4.13042 4.25636 4.30310 4.35668 4.45480 4.53134 4.55844 4.61223 4.67120 4.68425 4.82737 4.84949 4.91350 4.96306 5.03968 5.06947 5.10780 5.12905 5.16142 5.25483 5.26321 5.47706 5.49950 5.57013 5.58174 5.68269 5.69766 5.93756 6.15063 6.43850 6.91811 7.28143 7.74206 8.72793 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.004849 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.867559 B = 5773.162232 C = 6770.798476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.607 5.607 7 C 0.563 3.437 8 O -0.589 6.589 9 C -0.229 4.229 10 C -0.038 4.038 11 C -0.189 4.189 12 C -0.046 4.046 13 C -0.249 4.249 14 C 0.144 3.856 15 O -0.216 6.216 16 C -0.420 4.420 17 H 0.108 0.892 18 C -0.025 4.025 19 N -0.916 5.916 20 Si 1.023 2.977 21 H -0.244 1.244 22 H -0.271 1.271 23 H -0.267 1.267 24 C 0.096 3.904 25 C -0.128 4.128 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.271 0.729 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.032 0.968 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 1.693 6.797 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.163 4.163 5 C -0.012 4.012 6 N -0.341 5.341 7 C 0.354 3.646 8 O -0.469 6.469 9 C -0.233 4.233 10 C -0.056 4.056 11 C -0.208 4.208 12 C -0.064 4.064 13 C -0.269 4.269 14 C 0.091 3.909 15 O -0.120 6.120 16 C -0.496 4.496 17 H 0.125 0.875 18 C -0.223 4.223 19 N -0.553 5.553 20 Si 0.842 3.158 21 H -0.167 1.167 22 H -0.196 1.196 23 H -0.192 1.192 24 C -0.025 4.025 25 C -0.166 4.166 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.172 0.828 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.045 1.427 7.180 19.474 hybrid contribution 1.423 -0.557 -0.807 1.728 sum -16.622 0.870 6.373 17.823 Atomic orbital electron populations 1.21790 0.94319 1.01977 1.02511 1.21544 0.97130 0.95425 1.01528 1.21150 0.93280 0.96967 0.98199 1.21955 0.97350 0.94980 1.02021 1.21635 0.99003 0.93002 0.87601 1.48094 1.08496 1.51686 1.25776 1.18624 0.85001 0.77895 0.83123 1.90737 1.18813 1.62105 1.75231 1.19125 1.05074 1.09005 0.90136 1.21201 0.91461 0.92366 1.00561 1.21176 1.03983 1.04564 0.91041 1.21407 0.92192 0.93175 0.99653 1.21287 1.03231 1.05013 0.97322 1.19912 0.87897 0.88914 0.94208 1.83990 1.40734 1.52737 1.34588 1.22004 1.10728 1.32116 0.84734 0.87454 1.26763 0.96115 0.95212 1.04162 1.70276 1.22518 1.30331 1.32179 0.84483 0.77886 0.78982 0.74482 1.16699 1.19613 1.19152 1.22337 0.78089 0.98317 1.03761 1.22108 1.02393 0.94678 0.97429 0.92586 0.91441 0.92371 0.93978 0.91230 0.88440 0.95243 0.88741 0.93159 0.88493 0.82789 0.81588 0.82685 0.85877 0.91995 0.87794 0.89155 0.94915 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 71.98 0.70 -1.39 16 2 C -0.12 -2.18 5.40 30.59 0.17 -2.01 16 3 C -0.08 -1.58 2.15 -10.77 -0.02 -1.60 16 4 C -0.12 -3.39 5.36 30.67 0.16 -3.22 16 5 C 0.11 3.52 6.42 86.36 0.55 4.07 16 6 N -0.61 -21.83 2.97 -821.82 -2.44 -24.27 16 7 C 0.56 27.10 6.87 86.70 0.60 27.70 16 8 O -0.59 -35.31 16.16 -0.24 0.00 -35.32 16 9 C -0.23 -10.27 4.92 -19.99 -0.10 -10.37 16 10 C -0.04 -1.19 7.41 22.52 0.17 -1.02 16 11 C -0.19 -5.08 10.02 22.25 0.22 -4.86 16 12 C -0.05 -1.44 10.03 22.30 0.22 -1.21 16 13 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16 14 C 0.14 7.52 6.64 22.91 0.15 7.67 16 15 O -0.22 -13.92 8.94 -16.23 -0.15 -14.06 16 16 C -0.42 -25.66 9.49 67.93 0.64 -25.02 16 17 H 0.11 5.88 5.21 -2.91 -0.02 5.87 16 18 C -0.02 -1.47 5.49 84.85 0.47 -1.01 16 19 N -0.92 -60.49 13.67 21.62 0.30 -60.19 16 20 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 21 H -0.24 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.10 2.41 5.53 86.51 0.48 2.89 16 25 C -0.13 -2.94 5.16 30.82 0.16 -2.78 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.81 6.53 -2.39 -0.02 0.79 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.05 2.03 7.03 -2.38 -0.02 2.01 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.15 3.67 7.32 -2.91 -0.02 3.65 16 37 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 40 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 2.40 4.70 -2.39 -0.01 2.38 16 43 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.11 1.75 6.50 -2.39 -0.02 1.73 16 Total: -1.00 -88.47 351.11 5.51 -82.96 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 1.00 Total: 26.76 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.77 Total: -22.67 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.14 Total: -84.46 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.15 Total: -49.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.47 5.51 -82.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299093952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.149 kcal (2) G-P(sol) polarization free energy of solvation -88.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds