Wall clock time and date at job start Tue Mar 31 2020 09:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 C 1.50700 * 109.46839 * 119.99521 * 2 1 3 5 5 O 1.21286 * 119.99770 * 120.00219 * 4 2 1 6 6 N 1.34776 * 120.00236 * 300.27660 * 4 2 1 7 7 C 1.39922 * 119.99973 * 174.84407 * 6 4 2 8 8 C 1.38962 * 120.03273 * 216.16206 * 7 6 4 9 9 C 1.38166 * 120.06481 * 179.72206 * 8 7 6 10 10 C 1.38161 * 120.13639 * 0.55179 * 9 8 7 11 11 C 1.38917 * 120.07528 * 359.72889 * 10 9 8 12 12 O 1.35743 * 120.03535 * 179.97438 * 11 10 9 13 13 C 1.34834 * 117.00326 * 5.96018 * 12 11 10 14 14 H 1.08000 * 119.99850 * 5.26925 * 13 12 11 15 15 C 1.38654 * 120.00312 * 185.27038 * 13 12 11 16 16 N 1.31548 * 120.00251 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99658 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47207 * 89.99957 * 17 15 13 19 19 H 1.48505 * 109.46633 * 209.99972 * 17 15 13 20 20 H 1.48492 * 109.47126 * 329.99817 * 17 15 13 21 21 C 1.38711 * 120.03732 * 36.43851 * 7 6 4 22 22 C 1.52998 * 109.47212 * 239.99867 * 2 1 3 23 23 C 1.53776 * 113.61356 * 163.28203 * 22 2 1 24 24 C 1.53786 * 87.08243 * 220.01418 * 23 22 2 25 25 C 1.53776 * 113.61638 * 65.77950 * 22 2 1 26 26 H 1.08995 * 109.47443 * 300.00316 * 1 2 3 27 27 H 1.09001 * 109.47460 * 60.00694 * 1 2 3 28 28 H 1.09005 * 109.47057 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46811 * 180.87045 * 3 2 1 30 30 H 1.09005 * 109.47079 * 300.86008 * 3 2 1 31 31 H 1.08994 * 109.47480 * 60.86570 * 3 2 1 32 32 H 0.97005 * 119.99529 * 354.84230 * 6 4 2 33 33 H 1.07998 * 119.97230 * 359.97438 * 8 7 6 34 34 H 1.07996 * 119.92822 * 180.26060 * 9 8 7 35 35 H 1.08003 * 119.96658 * 179.70333 * 10 9 8 36 36 H 0.96997 * 120.00268 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07074 * 359.97438 * 21 7 6 38 38 H 1.09001 * 112.84466 * 294.58187 * 22 2 1 39 39 H 1.09008 * 113.61441 * 334.56006 * 23 22 2 40 40 H 1.08996 * 113.62280 * 105.46684 * 23 22 2 41 41 H 1.08990 * 113.61215 * 270.88637 * 24 23 22 42 42 H 1.08998 * 113.61453 * 139.97710 * 24 23 22 43 43 H 1.08995 * 113.61659 * 254.52905 * 25 22 2 44 44 H 1.08998 * 113.61437 * 25.43177 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7020 -0.2530 2.4546 7 6 2.0772 -0.9722 3.5948 8 6 1.2293 -1.0242 4.6945 9 6 1.5965 -1.7388 5.8185 10 6 2.8121 -2.3944 5.8572 11 6 3.6667 -2.3414 4.7633 12 8 4.8610 -2.9854 4.8024 13 6 5.1048 -3.7584 5.8799 14 1 4.3335 -3.9116 6.6202 15 6 6.3456 -4.3568 6.0376 16 7 6.5835 -5.1106 7.0891 17 14 7.6799 -4.0913 4.7574 18 1 8.4854 -2.8983 5.1222 19 1 8.5604 -5.2860 4.7052 20 1 7.0546 -3.8786 3.4275 21 6 3.2983 -1.6292 3.6307 22 6 2.0400 -0.7213 -1.2492 23 6 3.5176 -0.4357 -1.5652 24 6 3.1084 -0.3792 -3.0466 25 6 1.7004 0.0048 -2.5616 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1298 1.4426 -0.0156 30 1 1.6640 1.9608 -0.8822 31 1 1.6894 1.9519 0.8976 32 1 1.2043 0.5747 2.5451 33 1 0.2805 -0.5088 4.6691 34 1 0.9340 -1.7812 6.6703 35 1 3.0984 -2.9482 6.7391 36 1 7.4514 -5.5295 7.1992 37 1 3.9608 -1.5870 2.7788 38 1 1.7871 -1.7815 -1.2586 39 1 3.8715 0.5179 -1.1734 40 1 4.1833 -1.2654 -1.3275 41 1 3.1488 -1.3462 -3.5478 42 1 3.6075 0.4108 -3.6076 43 1 0.8990 -0.4694 -3.1281 44 1 1.5575 1.0787 -2.4421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322912050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:27 Heat of formation + Delta-G solvation = -18.350336 kcal Electronic energy + Delta-G solvation = -24885.840835 eV Core-core repulsion = 21383.663003 eV Total energy + Delta-G solvation = -3502.177831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95814 -39.34122 -38.35195 -36.56379 -34.62972 -33.65094 -32.34103 -29.62847 -28.52088 -27.83072 -25.95317 -25.45131 -25.19837 -23.62699 -21.97487 -21.10941 -19.95088 -18.61395 -18.10683 -17.59221 -16.76128 -16.07932 -15.49924 -15.22855 -15.12775 -14.97597 -14.60847 -14.18444 -13.89734 -13.61406 -13.30755 -13.16198 -12.95775 -12.87835 -12.41244 -12.35051 -12.24233 -12.09806 -11.85303 -11.60181 -11.53712 -11.36601 -11.14392 -10.96808 -10.80069 -10.53655 -10.41941 -10.21604 -10.17052 -9.74439 -9.56532 -9.19462 -8.83042 -7.78450 -7.29335 -6.38189 -4.04353 1.95704 2.25195 2.83958 3.18215 3.27428 3.29826 3.47958 4.28623 4.30211 4.39815 4.42820 4.53189 4.68141 4.73632 4.81576 4.94102 5.02955 5.10050 5.13073 5.27558 5.39821 5.48846 5.51411 5.58872 5.63644 5.67666 5.74039 5.75630 5.76138 5.86209 5.89534 6.10010 6.10299 6.15403 6.16002 6.29924 6.41427 6.56061 6.84129 6.96496 7.14785 7.35275 7.61537 7.65881 7.83746 8.06547 8.35191 8.97551 9.61163 10.69389 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.003929 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.340112 B = 7124.618601 C = 8539.920069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.148 4.148 4 C 0.516 3.484 5 O -0.507 6.507 6 N -0.670 5.670 7 C 0.174 3.826 8 C -0.227 4.227 9 C -0.061 4.061 10 C -0.232 4.232 11 C 0.172 3.828 12 O -0.214 6.214 13 C -0.388 4.388 14 H 0.107 0.893 15 C 0.064 3.936 16 N -0.880 5.880 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.258 1.258 21 C -0.186 4.186 22 C -0.084 4.084 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.404 0.596 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.134 0.866 36 H 0.279 0.721 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 14.255 -15.857 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.205 4.205 4 C 0.303 3.697 5 O -0.380 6.380 6 N -0.315 5.315 7 C 0.081 3.919 8 C -0.248 4.248 9 C -0.079 4.079 10 C -0.252 4.252 11 C 0.119 3.881 12 O -0.119 6.119 13 C -0.463 4.463 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.518 5.518 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.208 4.208 22 C -0.103 4.103 23 C -0.176 4.176 24 C -0.180 4.180 25 C -0.174 4.174 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.239 0.761 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.517 13.377 -16.035 23.848 hybrid contribution 0.269 0.327 -0.095 0.434 sum -11.248 13.704 -16.130 23.969 Atomic orbital electron populations 1.21822 0.92425 1.02854 1.02534 1.20724 0.97086 0.96394 0.93136 1.22057 1.02285 0.93593 1.02595 1.20663 0.80263 0.84678 0.84132 1.90763 1.35364 1.25661 1.86200 1.43430 1.57231 1.26162 1.04691 1.17180 0.92759 0.95840 0.86166 1.20355 1.00024 1.09145 0.95321 1.20560 0.95532 0.95250 0.96606 1.21303 0.96249 1.07205 1.00430 1.18894 0.86129 0.90480 0.92575 1.83596 1.30418 1.54491 1.43360 1.20779 1.00910 1.24509 1.00139 0.87590 1.24446 0.97273 0.95271 0.96893 1.69641 1.24355 1.30757 1.27022 0.86216 0.80638 0.77831 0.82529 1.19898 1.20733 1.18154 1.20136 0.96799 1.05396 0.98424 1.22361 0.96658 0.99819 0.91416 1.23048 0.96519 1.02542 0.95476 1.22789 0.96819 1.01563 0.96820 1.23043 0.97294 1.00614 0.96480 0.92158 0.91270 0.91943 0.91295 0.91015 0.92170 0.76070 0.87258 0.86787 0.84858 0.91075 0.85025 0.88565 0.89796 0.90998 0.90344 0.91679 0.91650 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.23 37.16 0.31 -0.79 16 2 C -0.07 -0.70 0.53 -155.66 -0.08 -0.78 16 3 C -0.15 -1.16 7.57 37.16 0.28 -0.88 16 4 C 0.52 7.50 6.25 -10.99 -0.07 7.44 16 5 O -0.51 -9.77 13.25 5.55 0.07 -9.70 16 6 N -0.67 -9.26 5.11 -9.88 -0.05 -9.31 16 7 C 0.17 3.13 6.27 -83.72 -0.53 2.60 16 8 C -0.23 -3.79 9.97 -39.34 -0.39 -4.18 16 9 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 10 C -0.23 -5.13 9.13 -39.36 -0.36 -5.49 16 11 C 0.17 4.21 6.64 -39.13 -0.26 3.95 16 12 O -0.21 -5.95 8.58 0.06 0.00 -5.95 16 13 C -0.39 -11.26 9.90 30.89 0.31 -10.96 16 14 H 0.11 3.11 5.53 -52.49 -0.29 2.82 16 15 C 0.06 1.86 5.49 -17.52 -0.10 1.76 16 16 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 17 Si 0.90 22.50 28.62 -169.99 -4.86 17.64 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.26 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.19 -4.11 8.63 -39.21 -0.34 -4.45 16 22 C -0.08 -0.87 2.42 -89.81 -0.22 -1.09 16 23 C -0.14 -1.50 7.04 -25.92 -0.18 -1.69 16 24 C -0.14 -1.23 8.08 -25.91 -0.21 -1.44 16 25 C -0.14 -1.07 6.75 -25.92 -0.17 -1.24 16 26 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 27 H 0.07 0.43 7.63 -51.93 -0.40 0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.61 5.98 -51.93 -0.31 0.30 16 30 H 0.07 0.44 6.26 -51.93 -0.32 0.11 16 31 H 0.06 0.40 7.45 -51.93 -0.39 0.02 16 32 H 0.40 4.02 7.67 -40.82 -0.31 3.71 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.13 3.07 5.71 -52.48 -0.30 2.77 16 36 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.13 3.06 6.32 -52.49 -0.33 2.73 16 38 H 0.10 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.08 0.85 5.59 -51.92 -0.29 0.56 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.55 6.09 -51.93 -0.32 0.24 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -32.63 348.83 -7.39 -40.02 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.17 Total: 5.90 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.41 Total: -18.74 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.72 Total: -34.43 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.86 Total: 17.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.63 -7.39 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322912050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.671 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds